class CollectionsController < ApplicationController
- skip_around_filter :thread_with_mandatory_api_token, only: [:show_file]
- skip_before_filter :find_object_by_uuid, only: [:provenance, :show_file]
+ skip_around_filter(:require_thread_api_token,
+ only: [:show_file, :show_file_links])
+ skip_before_filter(:find_object_by_uuid,
+ only: [:provenance, :show_file, :show_file_links])
+ # We depend on show_file to display the user agreement:
skip_before_filter :check_user_agreements, only: [:show_file]
RELATION_LIMIT = 5
def show_pane_list
- %w(Files Attributes Metadata Provenance_graph Used_by JSON API)
+ %w(Files Provenance_graph Used_by Advanced)
end
def set_persistent
end
end
+ def choose
+ params[:limit] ||= 40
+
+ @filters += [['link_class','=','name'],
+ ['head_uuid','is_a','arvados#collection']]
+
+ @objects = Link
+ find_objects_for_index
+
+ @name_links = @objects
+
+ @objects = Collection.
+ filter([['uuid','in',@name_links.collect(&:head_uuid)]])
+ super
+ end
+
def index
if params[:search].andand.length.andand > 0
tags = Link.where(any: ['contains', params[:search]])
info[:links] << link
end
@request_url = request.url
+
+ render_index
+ end
+
+ def show_file_links
+ Thread.current[:reader_tokens] = [params[:reader_token]]
+ return if false.equal?(find_object_by_uuid)
+ render layout: false
end
def show_file
# purposes: it lets us return a useful status code for common errors, and
# helps us figure out which token to provide to arv-get.
coll = nil
- usable_token = find_usable_token do
+ tokens = [Thread.current[:arvados_api_token], params[:reader_token]].compact
+ usable_token = find_usable_token(tokens) do
coll = Collection.find(params[:uuid])
end
if usable_token.nil?
self.response_body = file_enumerator opts
end
+ def sharing_scopes
+ ["GET /arvados/v1/collections/#{@object.uuid}", "GET /arvados/v1/collections/#{@object.uuid}/", "GET /arvados/v1/keep_services/accessible"]
+ end
+
+ def search_scopes
+ begin
+ ApiClientAuthorization.filter([['scopes', '=', sharing_scopes]]).results
+ rescue ArvadosApiClient::AccessForbiddenException
+ nil
+ end
+ end
+
def show
return super if !@object
if current_user
end
@output_of = jobs_with.call(output: @object.uuid)
@log_of = jobs_with.call(log: @object.uuid)
- folder_links = Link.limit(RELATION_LIMIT).order("modified_at DESC")
+ @project_links = Link.limit(RELATION_LIMIT).order("modified_at DESC")
.where(head_uuid: @object.uuid, link_class: 'name').results
- folder_hash = Group.where(uuid: folder_links.map(&:tail_uuid)).to_hash
- @folders = folder_links.map { |link| folder_hash[link.tail_uuid] }
+ project_hash = Group.where(uuid: @project_links.map(&:tail_uuid)).to_hash
+ @projects = project_hash.values
@permissions = Link.limit(RELATION_LIMIT).order("modified_at DESC")
.where(head_uuid: @object.uuid, link_class: 'permission',
name: 'can_read').results
.where(head_uuid: @object.uuid, tail_uuid: current_user.uuid,
link_class: 'resources', name: 'wants')
.results.any?
+ @search_sharing = search_scopes
+ end
+
+ if params["tab_pane"] == "Provenance_graph"
+ @prov_svg = ProvenanceHelper::create_provenance_graph(@object.provenance, "provenance_svg",
+ {:request => request,
+ :direction => :bottom_up,
+ :combine_jobs => :script_only}) rescue nil
end
- @prov_svg = ProvenanceHelper::create_provenance_graph(@object.provenance, "provenance_svg",
- {:request => request,
- :direction => :bottom_up,
- :combine_jobs => :script_only}) rescue nil
- @used_by_svg = ProvenanceHelper::create_provenance_graph(@object.used_by, "used_by_svg",
- {:request => request,
- :direction => :top_down,
- :combine_jobs => :script_only,
- :pdata_only => true}) rescue nil
+ if params["tab_pane"] == "Used_by"
+ @used_by_svg = ProvenanceHelper::create_provenance_graph(@object.used_by, "used_by_svg",
+ {:request => request,
+ :direction => :top_down,
+ :combine_jobs => :script_only,
+ :pdata_only => true}) rescue nil
+ end
+ super
+ end
+
+ def sharing_popup
+ @search_sharing = search_scopes
+ respond_to do |format|
+ format.html
+ format.js
+ end
+ end
+
+ helper_method :download_link
+
+ def download_link
+ collections_url + "/download/#{@object.uuid}/#{@search_sharing.first.api_token}/"
+ end
+
+ def share
+ a = ApiClientAuthorization.create(scopes: sharing_scopes)
+ @search_sharing = search_scopes
+ render 'sharing_popup'
+ end
+
+ def unshare
+ @search_sharing = search_scopes
+ @search_sharing.each do |s|
+ s.destroy
+ end
+ @search_sharing = search_scopes
+ render 'sharing_popup'
end
protected
- def find_usable_token
- # Iterate over every token available to make it the current token and
+ def find_usable_token(token_list)
+ # Iterate over every given token to make it the current token and
# yield the given block.
# If the block succeeds, return the token it used.
# Otherwise, render an error response based on the most specific
# error we encounter, and return nil.
- read_tokens = [Thread.current[:arvados_api_token]].compact
- if params[:reader_tokens].is_a? Array
- read_tokens += params[:reader_tokens]
- end
most_specific_error = [401]
- read_tokens.each do |api_token|
- using_specific_api_token(api_token) do
- begin
+ token_list.each do |api_token|
+ begin
+ using_specific_api_token(api_token) do
yield
return api_token
- rescue ArvadosApiClient::NotLoggedInException => error
- status = 401
- rescue => error
- status = (error.message =~ /\[API: (\d+)\]$/) ? $1.to_i : nil
- raise unless [401, 403, 404].include?(status)
end
- if status >= most_specific_error.first
- most_specific_error = [status, error]
+ rescue ArvadosApiClient::ApiError => error
+ if error.api_status >= most_specific_error.first
+ most_specific_error = [error.api_status, error]
end
end
end
end
def each
return unless @opts[:uuid] && @opts[:file]
- env = Hash[ENV].
- merge({
- 'ARVADOS_API_HOST' =>
- arvados_api_client.arvados_v1_base.
- sub(/\/arvados\/v1/, '').
- sub(/^https?:\/\//, ''),
- 'ARVADOS_API_TOKEN' =>
- @opts[:arvados_api_token],
- 'ARVADOS_API_HOST_INSECURE' =>
- Rails.configuration.arvados_insecure_https ? 'true' : 'false'
- })
+
+ env = Hash[ENV].dup
+
+ require 'uri'
+ u = URI.parse(arvados_api_client.arvados_v1_base)
+ env['ARVADOS_API_HOST'] = "#{u.host}:#{u.port}"
+ env['ARVADOS_API_TOKEN'] = @opts[:arvados_api_token]
+ env['ARVADOS_API_HOST_INSECURE'] = "true" if Rails.configuration.arvados_insecure_https
+
IO.popen([env, 'arv-get', "#{@opts[:uuid]}/#{@opts[:file]}"],
'rb') do |io|
- while buf = io.read(2**20)
+ while buf = io.read(2**16)
yield buf
end
end
projects / arvados.git / blobdiff