end
def current_api_host
- Rails.configuration.arvados_v1_base.gsub /https?:\/\/|\/arvados\/v1/,''
+ if Rails.configuration.Services.Controller.ExternalURL.port == 443
+ "#{Rails.configuration.Services.Controller.ExternalURL.hostname}"
+ else
+ "#{Rails.configuration.Services.Controller.ExternalURL.hostname}:#{Rails.configuration.Services.Controller.ExternalURL.port}"
+ end
+ end
+
+ def current_uuid_prefix
+ Rails.configuration.ClusterID
end
def render_markup(markup)
- raw RedCloth.new(markup.to_s).to_html(:refs_arvados, :textile) if markup
+ allowed_tags = Rails::Html::Sanitizer.white_list_sanitizer.allowed_tags + %w(table tbody th tr td col colgroup caption thead tfoot)
+ sanitize(raw(RedCloth.new(markup.to_s).to_html(:refs_arvados, :textile)), tags: allowed_tags) if markup
end
def human_readable_bytes_html(n)
- return h(n) unless n.is_a? Fixnum
+ return h(n) unless n.is_a? Integer
return "0 bytes" if (n == 0)
orders = {
end
return h(n)
- #raw = n.to_s
- #cooked = ''
- #while raw.length > 3
- # cooked = ',' + raw[-3..-1] + cooked
- # raw = raw[0..-4]
- #end
- #cooked = raw + cooked
end
def resource_class_for_uuid(attrvalue, opts={})
raw(link_name)
else
controller_class = resource_class.to_s.tableize
- if controller_class.eql?('groups') and object.andand.group_class.eql?('project')
+ if controller_class.eql?('groups') and (object.andand.group_class.eql?('project') or object.andand.group_class.eql?('filter'))
controller_class = 'projects'
end
(link_to raw(link_name), { controller: controller_class, action: 'show', id: ((opts[:name_link].andand.uuid) || link_uuid) }, style_opts) + raw(tags)
end
input_type = 'text'
+ opt_selection = nil
attrtype = object.class.attribute_info[attr.to_sym].andand[:type]
if attrtype == 'text' or attr == 'description'
input_type = 'textarea'
elsif attrtype == 'datetime'
input_type = 'date'
+ elsif attrtype == 'boolean'
+ input_type = 'select'
+ opt_selection = ([{value: "true", text: "true"}, {value: "false", text: "false"}]).to_json
else
input_type = 'text'
end
"data-emptytext" => '(none)',
"data-placement" => "bottom",
"data-type" => input_type,
+ "data-source" => opt_selection,
"data-title" => "Edit #{attr.to_s.gsub '_', ' '}",
"data-name" => htmloptions['selection_name'] || attr,
"data-object-uuid" => object.uuid,
display_value = link.name
elsif value_info[:link_name]
display_value = value_info[:link_name]
- elsif value_info[:selection_name]
- display_value = value_info[:selection_name]
+ elsif (sn = value_info[:selection_name]) && sn != ""
+ display_value = sn
end
end
if (attr == :components) and (subattr.size > 2)
def cwl_inputs_required(object, inputs_schema, set_attr_path)
r = 0
inputs_schema.each do |input|
- required, primary_type, param_id = cwl_input_info(input)
- dn, attrvalue = cwl_input_value(object, input, set_attr_path + [param_id])
+ required, _, param_id = cwl_input_info(input)
+ _, attrvalue = cwl_input_value(object, input, set_attr_path + [param_id])
r += 1 if required and attrvalue.nil?
end
r
chooser_title = "Choose a #{primary_type == 'Directory' ? 'dataset' : 'file'}:"
selection_param = object.class.to_s.underscore + dn
if attrvalue.is_a? Hash
- display_value = attrvalue[:"arv:collection"] || attrvalue[:location]
+ display_value = attrvalue[:"http://arvados.org/cwl#collectionUUID"] || attrvalue[:"arv:collection"] || attrvalue[:location]
re = CollectionsHelper.match_uuid_with_optional_filepath(display_value)
+ locationre = CollectionsHelper.match(attrvalue[:location][5..-1])
if re
- if re[4]
- display_value = "#{Collection.find(re[1]).name} / #{re[4][1..-1]}"
+ if locationre and locationre[4]
+ display_value = "#{Collection.find(re[1]).name} / #{locationre[4][1..-1]}"
else
display_value = Collection.find(re[1]).name
end
"data-emptytext" => "none",
"data-placement" => "bottom",
"data-type" => "select",
- "data-source" => (opt_empty_selection + primary_type[:symbols].map {|i| {:value => i, :text => i} }).to_json,
+ "data-source" => (opt_empty_selection + primary_type[:symbols].map {|i| {:value => cwl_shortname(i), :text => cwl_shortname(i)} }).to_json,
"data-url" => url_for(action: "update", id: object.uuid, controller: object.class.to_s.pluralize.underscore, merge: true),
"data-title" => "Set value for #{cwl_shortname(input_schema[:id])}",
"data-name" => dn,
render_runtime duration, use_words, round_to_min
end
- # Keep locators are expected to be of the form \"...<pdh/file_path>\"
- JSON_KEEP_LOCATOR_REGEXP = /(.*)(([0-9a-f]{32}\+\d+)(.*)\"(.*))/
+ # Keep locators are expected to be of the form \"...<pdh/file_path>\" or \"...<uuid/file_path>\"
+ JSON_KEEP_LOCATOR_REGEXP = /([0-9a-f]{32}\+\d+[^'"]*|[a-z0-9]{5}-4zz18-[a-z0-9]{15}[^'"]*)(?=['"]|\z|$)/
def keep_locator_in_json str
- JSON_KEEP_LOCATOR_REGEXP.match str
+ # Return a list of all matches
+ str.scan(JSON_KEEP_LOCATOR_REGEXP).flatten
end
private
def is_textile?( object, attr )
- is_textile = object.textile_attributes.andand.include?(attr)
+ object.textile_attributes.andand.include?(attr)
end
end
projects / arvados.git / blobdiff