13976: Fix keep reference error

[arvados.git] / sdk / cwl / arvados_cwl / runner.py

diff --git a/sdk/cwl/arvados_cwl/runner.py b/sdk/cwl/arvados_cwl/runner.py
index 9c422a42f76975d300952d004f5e2849d283c2a3..a0617e1df68e8955ef71a33952c1afe9498ac58c 100644 (file)
--- a/sdk/cwl/arvados_cwl/runner.py
+++ b/sdk/cwl/arvados_cwl/runner.py
@@ -7,7 +7,7 @@ import urlparse
 from functools import partial
 import logging
 import json
-import subprocess
+import subprocess32 as subprocess
 from collections import namedtuple
 
 from StringIO import StringIO
@@ -129,7 +129,8 @@ def upload_dependencies(arvrunner, name, document_loader,
 
     sc = []
     def only_real(obj):
-        if obj.get("location", "").startswith("file:"):
+        loc = obj.get("location", "")
+        if loc.startswith("file:") or loc.startswith("keep:"):
             sc.append(obj)
 
     visit_class(sc_result, ("File", "Directory"), only_real)