from io import open
import logging
import sys
+import arvados
-from crunchstat_summary import logger, summarizer
+from crunchstat_summary import logger, summarizer, reader
+from crunchstat_summary._version import __version__
class ArgumentParser(argparse.ArgumentParser):
help='[Deprecated] Look up the specified container find its container request '
'and read its log data from Keep (or from the Arvados event log, '
'if the job is still running)')
- src.add_argument(
- '--pipeline-instance', type=str, metavar='UUID',
- help='[Deprecated] Summarize each component of the given pipeline instance (historical pre-1.4)')
src.add_argument(
'--log-file', type=str,
help='Read log data from a regular file')
self.add_argument(
'--verbose', '-v', action='count', default=0,
help='Log more information (once for progress, twice for debug)')
+ self.add_argument('--version', action='version',
+ version="%s %s" % (sys.argv[0], __version__),
+ help='Print version and exit.')
class UTF8Decode(object):
kwargs = {
'skip_child_jobs': self.args.skip_child_jobs,
'threads': self.args.threads,
+ 'arv': arvados.api('v1')
}
- if self.args.pipeline_instance:
- self.summer = summarizer.NewSummarizer(self.args.pipeline_instance, **kwargs)
- elif self.args.job:
+ if self.args.job:
self.summer = summarizer.NewSummarizer(self.args.job, **kwargs)
elif self.args.container:
self.summer = summarizer.NewSummarizer(self.args.container, **kwargs)
fh = UTF8Decode(gzip.open(self.args.log_file))
else:
fh = open(self.args.log_file, mode = 'r', encoding = 'utf-8')
- self.summer = summarizer.Summarizer(fh, **kwargs)
+ self.summer = summarizer.Summarizer(reader.StubReader(fh), **kwargs)
else:
- self.summer = summarizer.Summarizer(sys.stdin, **kwargs)
+ self.summer = summarizer.Summarizer(reader.StubReader(sys.stdin), **kwargs)
return self.summer.run()
def report(self):