-all: api-image doc-image workbench-image warehouse-image sso-image
+all: api-image doc-image workbench-image keep-image sso-image
# `make clean' removes the files generated in the build directory
# but does not remove any docker images generated in previous builds
clean:
+ -rm -rf build
-rm *-image */generated/*
-@rmdir */generated
# `make realclean' will also remove the docker images and force
# subsequent makes to build the entire chain from the ground up
realclean: clean
- -[ -n "`docker ps -q`" ] && docker stop `docker ps -q`
- -docker rm `docker ps -a -q`
- -docker rmi `docker images -q`
+ -[ -n "`$(DOCKER) ps -q`" ] && $(DOCKER) stop `$(DOCKER) ps -q`
+ -$(DOCKER) rm `$(DOCKER) ps -a -q`
+ -$(DOCKER) rmi `$(DOCKER) images -q`
# ============================================================
# Dependencies for */generated files which are prerequisites
CONFIG_RB = build_tools/config.rb
+BUILD = build/.buildstamp
+
BASE_DEPS = base/Dockerfile $(BASE_GENERATED)
+JOBS_DEPS = jobs/Dockerfile
+
+JAVA_BWA_SAMTOOLS_DEPS = java-bwa-samtools/Dockerfile
+
API_DEPS = api/Dockerfile $(API_GENERATED)
DOC_DEPS = doc/Dockerfile doc/apache2_vhost
workbench/passenger.conf \
$(WORKBENCH_GENERATED)
-WAREHOUSE_DEPS = warehouse/Dockerfile \
- warehouse/supervisor.conf \
- $(WAREHOUSE_GENERATED)
+KEEP_DEPS = keep/Dockerfile
SSO_DEPS = sso/passenger.conf $(SSO_GENERATED)
+BCBIO_NEXTGEN_DEPS = bcbio-nextgen/Dockerfile
+
BASE_GENERATED = base/generated/arvados.tar.gz
API_GENERATED = \
api/generated/config_databases.sh \
api/generated/database.yml \
api/generated/omniauth.rb \
- api/generated/production.rb \
- api/generated/secret_token.rb \
+ api/generated/application.yml \
api/generated/superuser_token
API_GENERATED_IN = \
api/config_databases.sh.in \
api/database.yml.in \
api/omniauth.rb.in \
- api/production.rb.in \
- api/secret_token.rb.in \
+ api/application.yml.in \
api/superuser_token.in
WORKBENCH_GENERATED = \
workbench/generated/apache2_vhost \
- workbench/generated/production.rb \
- workbench/generated/secret_token.rb
+ workbench/generated/application.yml
WORKBENCH_GENERATED_IN = \
workbench/apache2_vhost.in \
- workbench/production.rb.in \
- workbench/secret_token.rb.in
-
-WAREHOUSE_GENERATED = warehouse/generated/warehouse.conf
-
-WAREHOUSE_GENERATED_IN = warehouse/warehouse.conf.in
+ workbench/application.yml.in
SSO_GENERATED = \
sso/generated/apache2_vhost \
sso/seeds.rb.in \
sso/secret_token.rb.in
-$(BASE_GENERATED): config.yml
+$(BUILD):
+ mkdir -p build
+ rsync -rlp --exclude=docker/ --exclude='**/log/*' --exclude='**/tmp/*' \
+ --chmod=Da+rx,Fa+rX ../ build/
+ find build/ -name \*.gem -delete
+ cd build/services/fuse/ && python setup.py build
+ cd build/sdk/python/ && python setup.py build
+ cd build/sdk/cli && gem build arvados-cli.gemspec
+ cd build/sdk/ruby && gem build arvados.gemspec
+ touch build/.buildstamp
+
+$(BASE_GENERATED): config.yml $(BUILD)
$(CONFIG_RB)
mkdir -p base/generated
- tar -c -z -f base/generated/arvados.tar.gz -C .. . \
- --exclude=services/api/log/* --exclude=docker/*
-
+ tar -czf base/generated/arvados.tar.gz -C build .
$(API_GENERATED): config.yml $(API_GENERATED_IN)
$(CONFIG_RB)
# The docker build -q option suppresses verbose build output.
# Necessary to prevent failure on building warehouse; see
# https://github.com/dotcloud/docker/issues/3172
-DOCKER_BUILD = docker build -q
+DOCKER_BUILD = $(DOCKER) build -q
# ============================================================
# The main Arvados servers: api, doc, workbench, warehouse
-api-image: passenger-image $(API_DEPS)
+api-image: passenger-image $(BUILD) $(API_DEPS)
mkdir -p api/generated
- tar -c -z -f api/generated/api.tar.gz -C ../services api --exclude=api/log/*
+ tar -czf api/generated/api.tar.gz -C build/services api
$(DOCKER_BUILD) -t arvados/api api
date >api-image
-doc-image: base-image $(DOC_DEPS)
+doc-image: base-image $(BUILD) $(DOC_DEPS)
mkdir -p doc/generated
- tar -c -z -f doc/generated/doc.tar.gz -C .. doc
+ tar -czf doc/generated/doc.tar.gz -C build doc
$(DOCKER_BUILD) -t arvados/doc doc
date >doc-image
-workbench-image: passenger-image $(WORKBENCH_DEPS)
+keep-image: debian-image $(BUILD) $(KEEP_DEPS)
+ $(DOCKER_BUILD) -t arvados/keep keep
+ date >keep-image
+
+jobs-image: base-image $(BUILD) $(JOBS_DEPS)
+ $(DOCKER_BUILD) -t arvados/jobs jobs
+ date >jobs-image
+
+java-bwa-samtools-image: jobs-image $(BUILD) $(JAVA_BWA_SAMTOOLS_DEPS)
+ $(DOCKER_BUILD) -t arvados/jobs-java-bwa-samtools java-bwa-samtools
+ date >java-bwa-samtools-image
+
+bcbio-nextgen-image: $(BUILD) $(BASE_GENERATED) $(BCBIO_NEXTGEN_DEPS)
+ rm -rf bcbio-nextgen/generated
+ cp -r base/generated bcbio-nextgen
+ $(DOCKER_BUILD) -t arvados/bcbio-nextgen bcbio-nextgen
+ date >bcbio-nextgen-image
+
+workbench-image: passenger-image $(BUILD) $(WORKBENCH_DEPS)
mkdir -p workbench/generated
- tar -c -z -f workbench/generated/workbench.tar.gz -C ../apps workbench
+ tar -czf workbench/generated/workbench.tar.gz -C build/apps workbench
$(DOCKER_BUILD) -t arvados/workbench workbench
date >workbench-image