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3411: code review
[arvados.git]
/
crunch_scripts
/
split-fastq.py
diff --git
a/crunch_scripts/split-fastq.py
b/crunch_scripts/split-fastq.py
index 253dd22ea89fcdf558a81f7a72851b8643ffb2bc..17aabf2930393a48d3539483d5198cab5af35631 100755
(executable)
--- a/
crunch_scripts/split-fastq.py
+++ b/
crunch_scripts/split-fastq.py
@@
-119,10
+119,11
@@
for s in inp.all_streams():
splitfastq(p)
else:
for i in xrange(0, len(p)):
splitfastq(p)
else:
for i in xrange(0, len(p)):
- m = p[i]["reader"].as_manifest()[1:]
- manifest_list.append(["./_" + str(piece), m[:-1]])
+ m = p[i]["reader"].as_manifest().split()
+ m[0] = "./_" + str(piece)
+ manifest_list.append(m)
piece += 1
piece += 1
-manifest_text = "\n".join(" ".join(m) for m in manifest_list)
+manifest_text = "\n".join(" ".join(m) for m in manifest_list)
+ "\n"
arvados.current_task().set_output(manifest_text)
arvados.current_task().set_output(manifest_text)