- Welcome:
- user/index.html.textile.liquid
- user/getting_started/community.html.textile.liquid
+ - Walkthough:
+ - user/tutorials/wgs-tutorial.html.textile.liquid
- Run a workflow using Workbench:
- user/getting_started/workbench.html.textile.liquid
- user/tutorials/tutorial-workflow-workbench.html.textile.liquid
- - user/composer/composer.html.textile.liquid
+ - Working at the Command Line:
+ - user/getting_started/setup-cli.html.textile.liquid
+ - user/reference/api-tokens.html.textile.liquid
+ - user/getting_started/check-environment.html.textile.liquid
- Access an Arvados virtual machine:
- user/getting_started/vm-login-with-webshell.html.textile.liquid
- user/getting_started/ssh-access-unix.html.textile.liquid
- user/getting_started/ssh-access-windows.html.textile.liquid
- - user/getting_started/check-environment.html.textile.liquid
- - user/reference/api-tokens.html.textile.liquid
- Working with data sets:
- user/tutorials/tutorial-keep.html.textile.liquid
- user/tutorials/tutorial-keep-get.html.textile.liquid
- user/tutorials/tutorial-keep-mount-gnu-linux.html.textile.liquid
- user/tutorials/tutorial-keep-mount-os-x.html.textile.liquid
- user/tutorials/tutorial-keep-mount-windows.html.textile.liquid
- - user/topics/keep.html.textile.liquid
- user/tutorials/tutorial-keep-collection-lifecycle.html.textile.liquid
- user/topics/arv-copy.html.textile.liquid
- - user/topics/storage-classes.html.textile.liquid
- user/topics/collection-versioning.html.textile.liquid
- - Working with git repositories:
- - user/tutorials/add-new-repository.html.textile.liquid
- - user/tutorials/git-arvados-guide.html.textile.liquid
- - Running workflows at the command line:
+ - user/topics/storage-classes.html.textile.liquid
+ - Data Analysis with Workflows:
+ - user/cwl/arvados-vscode-training.html.md.liquid
- user/cwl/cwl-runner.html.textile.liquid
- user/cwl/cwl-run-options.html.textile.liquid
- - Develop an Arvados workflow:
- - user/tutorials/intro-crunch.html.textile.liquid
- user/tutorials/writing-cwl-workflow.html.textile.liquid
+ - user/topics/arv-docker.html.textile.liquid
- user/cwl/cwl-style.html.textile.liquid
- - user/cwl/federated-workflows.html.textile.liquid
- user/cwl/cwl-extensions.html.textile.liquid
+ - user/cwl/federated-workflows.html.textile.liquid
- user/cwl/cwl-versions.html.textile.liquid
- - user/topics/arv-docker.html.textile.liquid
+ - user/cwl/crunchstat-summary.html.textile.liquid
+ - Working with git repositories:
+ - user/tutorials/add-new-repository.html.textile.liquid
+ - user/tutorials/git-arvados-guide.html.textile.liquid
- Reference:
- user/topics/link-accounts.html.textile.liquid
- user/reference/cookbook.html.textile.liquid
- sdk/python/example.html.textile.liquid
- sdk/python/python.html.textile.liquid
- sdk/python/arvados-fuse.html.textile.liquid
- - sdk/python/events.html.textile.liquid
+ - sdk/python/arvados-cwl-runner.html.textile.liquid
- sdk/python/cookbook.html.textile.liquid
+ - sdk/python/events.html.textile.liquid
- CLI:
- sdk/cli/install.html.textile.liquid
- sdk/cli/index.html.textile.liquid
- api/requests.html.textile.liquid
- api/methods.html.textile.liquid
- api/resources.html.textile.liquid
+ - api/tokens_sso.html.textile.liquid
- Permission and authentication:
- api/methods/api_client_authorizations.html.textile.liquid
- api/methods/api_clients.html.textile.liquid
- api/methods/virtual_machines.html.textile.liquid
- api/methods/keep_disks.html.textile.liquid
- Data management:
+ - api/keep-webdav.html.textile.liquid
+ - api/keep-s3.html.textile.liquid
+ - api/keep-web-urls.html.textile.liquid
+ - api/projects.html.textile.liquid
- api/methods/collections.html.textile.liquid
- api/methods/repositories.html.textile.liquid
- Container engine:
architecture:
- Topics:
- architecture/index.html.textile.liquid
- - api/storage.html.textile.liquid
+ - Storage in Keep:
+ - architecture/storage.html.textile.liquid
+ - architecture/keep-components-overview.html.textile.liquid
+ - architecture/keep-clients.html.textile.liquid
+ - architecture/keep-data-lifecycle.html.textile.liquid
+ - architecture/manifest-format.html.textile.liquid
+ - Computation with Crunch:
- api/execution.html.textile.liquid
+ - Other:
- api/permission-model.html.textile.liquid
- architecture/federation.html.textile.liquid
admin:
- admin/migrating-providers.html.textile.liquid
- user/topics/arvados-sync-groups.html.textile.liquid
- admin/scoped-tokens.html.textile.liquid
+ - admin/token-expiration-policy.html.textile.liquid
+ - admin/user-activity.html.textile.liquid
- Monitoring:
- admin/logging.html.textile.liquid
- admin/metrics.html.textile.liquid
- admin/logs-table-management.html.textile.liquid
- admin/workbench2-vocabulary.html.textile.liquid
- admin/storage-classes.html.textile.liquid
- - admin/recovering-deleted-collections.html.textile.liquid
+ - admin/keep-recovering-data.html.textile.liquid
+ - admin/keep-measuring-deduplication.html.textile.liquid
- Cloud:
- admin/spot-instances.html.textile.liquid
- admin/cloudtest.html.textile.liquid
- install/index.html.textile.liquid
- Docker quick start:
- install/arvbox.html.textile.liquid
+ - Installation with Salt:
+ - install/salt.html.textile.liquid
+ - install/salt-vagrant.html.textile.liquid
+ - install/salt-single-host.html.textile.liquid
+ - install/salt-multi-host.html.textile.liquid
- Arvados on Kubernetes:
- install/arvados-on-kubernetes.html.textile.liquid
- install/arvados-on-kubernetes-minikube.html.textile.liquid
- install/install-keep-balance.html.textile.liquid
- User interface:
- install/setup-login.html.textile.liquid
+ - install/install-ws.html.textile.liquid
- install/install-workbench-app.html.textile.liquid
- install/install-workbench2-app.html.textile.liquid
- install/install-composer.html.textile.liquid
- Additional services:
- - install/install-ws.html.textile.liquid
- - install/install-arv-git-httpd.html.textile.liquid
- install/install-shell-server.html.textile.liquid
- install/install-webshell.html.textile.liquid
- - Containers API:
- - install/crunch2-slurm/install-compute-node.html.textile.liquid
+ - install/install-arv-git-httpd.html.textile.liquid
+ - Containers API (cloud):
- install/install-jobs-image.html.textile.liquid
- - install/install-dispatch-cloud.html.textile.liquid
+ - install/crunch2-cloud/install-compute-node.html.textile.liquid
+ - install/crunch2-cloud/install-dispatch-cloud.html.textile.liquid
+ - Containers API (slurm):
- install/crunch2-slurm/install-dispatch.html.textile.liquid
+ - install/crunch2-slurm/configure-slurm.html.textile.liquid
+ - install/crunch2-slurm/install-compute-node.html.textile.liquid
- install/crunch2-slurm/install-test.html.textile.liquid
- External dependencies:
- install/install-postgresql.html.textile.liquid