13219: Adds TimeLimit support on Arvados CWL schema.

[arvados.git] / sdk / cwl / arvados_cwl / arv-cwl-schema.yml

diff --git a/sdk/cwl/arvados_cwl/arv-cwl-schema.yml b/sdk/cwl/arvados_cwl/arv-cwl-schema.yml
index eb26e9ef005ea9bc73c24a78049d14c282ea46e1..4eaa8536c467e123d5aad654a358ab49d1908d79 100644 (file)
--- a/sdk/cwl/arvados_cwl/arv-cwl-schema.yml
+++ b/sdk/cwl/arvados_cwl/arv-cwl-schema.yml
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
 $base: "http://arvados.org/cwl#"
 $namespaces:
   cwl: "https://w3id.org/cwl/cwl#"
@@ -23,6 +27,48 @@ $graph:
           name: LoadListingEnum
           symbols: [no_listing, shallow_listing, deep_listing]
 
+- name: cwltool:Secrets
+  type: record
+  inVocab: false
+  extends: cwl:ProcessRequirement
+  fields:
+    class:
+      type: string
+      doc: "Always 'Secrets'"
+      jsonldPredicate:
+        "_id": "@type"
+        "_type": "@vocab"
+    secrets:
+      type: string[]
+      doc: |
+        List one or more input parameters that are sensitive (such as passwords)
+        which will be deliberately obscured from logging.
+      jsonldPredicate:
+        "_type": "@id"
+        refScope: 0
+
+- name: cwltool:TimeLimit
+  type: record
+  inVocab: false
+  extends: cwl:ProcessRequirement
+  doc: |
+    Set an upper limit on the execution time of a CommandLineTool or
+    ExpressionTool.  A tool execution which exceeds the time limit may
+    be preemptively terminated and considered failed.  May also be
+    used by batch systems to make scheduling decisions.
+  fields:
+    - name: class
+      type: string
+      doc: "Always 'TimeLimit'"
+      jsonldPredicate:
+        "_id": "@type"
+        "_type": "@vocab"
+    - name: timelimit
+      type: [long, string]
+      doc: |
+        The time limit, in seconds.  A time limit of zero means no
+        time limit.  Negative time limits are an error.
+
 - name: RunInSingleContainer
   type: record
   extends: cwl:ProcessRequirement
@@ -120,3 +166,48 @@ $graph:
       jsonldPredicate:
         _id: "@type"
         _type: "@vocab"
+
+- name: IntermediateOutput
+  type: record
+  extends: cwl:ProcessRequirement
+  inVocab: false
+  doc: |
+    Specify desired handling of intermediate output collections.
+  fields:
+    class:
+      type: string
+      doc: "Always 'arv:IntermediateOutput'"
+      jsonldPredicate:
+        _id: "@type"
+        _type: "@vocab"
+    outputTTL:
+      type: int
+      doc: |
+        If the value is greater than zero, consider intermediate output
+        collections to be temporary and should be automatically
+        trashed. Temporary collections will be trashed `outputTTL` seconds
+        after creation.  A value of zero means intermediate output should be
+        retained indefinitely (this is the default behavior).
+
+        Note: arvados-cwl-runner currently does not take workflow dependencies
+        into account when setting the TTL on an intermediate output
+        collection. If the TTL is too short, it is possible for a collection to
+        be trashed before downstream steps that consume it are started.  The
+        recommended minimum value for TTL is the expected duration of the
+        entire the workflow.
+
+- name: ReuseRequirement
+  type: record
+  extends: cwl:ProcessRequirement
+  inVocab: false
+  doc: |
+    Enable/disable work reuse for current process.  Default true (work reuse enabled).
+  fields:
+    - name: class
+      type: string
+      doc: "Always 'arv:ReuseRequirement'"
+      jsonldPredicate:
+        _id: "@type"
+        _type: "@vocab"
+    - name: enableReuse
+      type: boolean