import argparse
import arvados
+import arvados.collection
import base64
import datetime
import errno
def flush_data(self):
start_buffer_len = self._data_buffer_len
- start_block_count = self.bytes_written / self.KEEP_BLOCK_SIZE
+ start_block_count = self.bytes_written / arvados.config.KEEP_BLOCK_SIZE
super(ArvPutCollectionWriter, self).flush_data()
if self._data_buffer_len < start_buffer_len: # We actually PUT data.
self.bytes_written += (start_buffer_len - self._data_buffer_len)
self.report_progress()
- if (self.bytes_written / self.KEEP_BLOCK_SIZE) > start_block_count:
+ if (self.bytes_written / arvados.config.KEEP_BLOCK_SIZE) > start_block_count:
self.cache_state()
def _record_new_input(self, input_type, source_name, dest_name):
print >>stderr, error
sys.exit(1)
- # Apply default replication, if none specified. TODO (#3410): Use
- # default replication given by discovery document.
- if args.replication <= 0:
- args.replication = 2
+ # write_copies diverges from args.replication here.
+ # args.replication is how many copies we will instruct Arvados to
+ # maintain (by passing it in collections().create()) after all
+ # data is written -- and if None was given, we'll use None there.
+ # Meanwhile, write_copies is how many copies of each data block we
+ # write to Keep, which has to be a number.
+ #
+ # If we simply changed args.replication from None to a default
+ # here, we'd end up erroneously passing the default replication
+ # level (instead of None) to collections().create().
+ write_copies = (args.replication or
+ api_client._rootDesc.get('defaultCollectionReplication', 2))
if args.progress:
reporter = progress_writer(human_progress)
writer = ArvPutCollectionWriter(
resume_cache, reporter, bytes_expected,
num_retries=args.retries,
- replication=args.replication)
+ replication=write_copies)
else:
writer = ArvPutCollectionWriter.from_cache(
resume_cache, reporter, bytes_expected,
num_retries=args.retries,
- replication=args.replication)
+ replication=write_copies)
# Install our signal handler for each code in CAUGHT_SIGNALS, and save
# the originals.
if args.stream:
output = writer.manifest_text()
if args.normalize:
- output = CollectionReader(output).manifest_text(normalize=True)
+ output = arvados.collection.CollectionReader(output).manifest_text(normalize=True)
elif args.raw:
output = ','.join(writer.data_locators())
else:
try:
manifest_text = writer.manifest_text()
if args.normalize:
- manifest_text = CollectionReader(manifest_text).manifest_text(normalize=True)
+ manifest_text = arvados.collection.CollectionReader(manifest_text).manifest_text(normalize=True)
replication_attr = 'replication_desired'
if api_client._schema.schemas['Collection']['properties'].get(replication_attr, None) is None:
- # API calls it 'redundancy' until #3410.
+ # API called it 'redundancy' before #3410.
replication_attr = 'redundancy'
# Register the resulting collection in Arvados.
collection = api_client.collections().create(