import ciso8601
import uuid
+from arvados_cwl.util import get_current_container, get_intermediate_collection_info
import ruamel.yaml as yaml
from cwltool.errors import WorkflowException
keepemptydirs(vwd)
- with Perf(metrics, "generatefiles.save_new %s" % self.name):
- vwd.save_new()
+ if not runtimeContext.current_container:
+ runtimeContext.current_container = get_current_container(self.arvrunner.api, self.arvrunner.num_retries, logger)
+ info = get_intermediate_collection_info(self.name, runtimeContext.current_container, runtimeContext.intermediate_output_ttl)
+ vwd.save_new(name=info["name"],
+ owner_uuid=self.arvrunner.project_uuid,
+ ensure_unique_name=True,
+ trash_at=info["trash_at"],
+ properties=info["properties"])
prev = None
for f, p in sorteditems:
if self.output_ttl < 0:
raise WorkflowException("Invalid value %d for output_ttl, cannot be less than zero" % container_request["output_ttl"])
+ if self.timelimit is not None:
+ scheduling_parameters["max_run_time"] = self.timelimit
+
+ container_request["output_name"] = "Output for step %s" % (self.name)
container_request["output_ttl"] = self.output_ttl
container_request["mounts"] = mounts
container_request["secret_mounts"] = secret_mounts
},
"secret_mounts": secret_mounts,
"runtime_constraints": {
- "vcpus": 1,
+ "vcpus": self.submit_runner_cores,
"ram": 1024*1024 * self.submit_runner_ram,
"API": True
},