baseurl:
arvados_api_host: localhost
+arvados_cluster_uuid: local
arvados_workbench_host: http://localhost
exclude: ["Rakefile", "tmp", "vendor"]
navbar:
- #start:
- #- Getting Started:
- #- start/index.html.textile.liquid
- #- Quickstart:
- #- start/getting_started/publicproject.html.textile.liquid
- #- start/getting_started/firstpipeline.html.textile.liquid
- #- Common Use Cases:
- #- start/getting_started/sharedata.html.textile.liquid
- #- Next Steps:
- #- start/getting_started/nextsteps.html.textile.liquid
-
userguide:
- Welcome:
- user/index.html.textile.liquid
- Run a workflow using Workbench:
- user/getting_started/workbench.html.textile.liquid
- user/tutorials/tutorial-workflow-workbench.html.textile.liquid
+ - user/composer/composer.html.textile.liquid
- Access an Arvados virtual machine:
- user/getting_started/vm-login-with-webshell.html.textile.liquid
- user/getting_started/ssh-access-unix.html.textile.liquid
- Working with data sets:
- user/tutorials/tutorial-keep.html.textile.liquid
- user/tutorials/tutorial-keep-get.html.textile.liquid
- - user/tutorials/tutorial-keep-collection-lifecycle.html.textile.liquid
- - user/tutorials/tutorial-keep-mount.html.textile.liquid
+ - user/tutorials/tutorial-keep-mount-gnu-linux.html.textile.liquid
+ - user/tutorials/tutorial-keep-mount-os-x.html.textile.liquid
+ - user/tutorials/tutorial-keep-mount-windows.html.textile.liquid
- user/topics/keep.html.textile.liquid
+ - user/tutorials/tutorial-keep-collection-lifecycle.html.textile.liquid
- user/topics/arv-copy.html.textile.liquid
+ - user/topics/storage-classes.html.textile.liquid
+ - user/topics/collection-versioning.html.textile.liquid
- Running workflows at the command line:
- user/cwl/cwl-runner.html.textile.liquid
- user/cwl/cwl-run-options.html.textile.liquid
- - user/topics/running-pipeline-command-line.html.textile.liquid
- - user/topics/arv-run.html.textile.liquid
- Working with git repositories:
- user/tutorials/add-new-repository.html.textile.liquid
- user/tutorials/git-arvados-guide.html.textile.liquid
- Develop an Arvados workflow:
- user/tutorials/intro-crunch.html.textile.liquid
- user/tutorials/writing-cwl-workflow.html.textile.liquid
+ - user/cwl/federated-workflows.html.textile.liquid
- user/cwl/cwl-style.html.textile.liquid
- user/cwl/cwl-extensions.html.textile.liquid
- user/topics/arv-docker.html.textile.liquid
+ - Reference:
+ - user/topics/link-accounts.html.textile.liquid
+ - user/reference/cookbook.html.textile.liquid
+ - Arvados License:
+ - user/copying/copying.html.textile.liquid
+ - user/copying/agpl-3.0.html
+ - user/copying/LICENSE-2.0.html
+ - user/copying/by-sa-3.0.html
+ - Obsolete documentation:
+ - user/topics/running-pipeline-command-line.html.textile.liquid
+ - user/topics/arv-run.html.textile.liquid
- user/tutorials/running-external-program.html.textile.liquid
- user/topics/crunch-tools-overview.html.textile.liquid
- user/tutorials/tutorial-firstscript.html.textile.liquid
- user/tutorials/tutorial-submit-job.html.textile.liquid
- user/topics/tutorial-parallel.html.textile.liquid
- - Develop a web service:
- - user/topics/arv-web.html.textile.liquid
- - Reference:
- - user/reference/cookbook.html.textile.liquid
- user/topics/run-command.html.textile.liquid
- user/reference/job-pipeline-ref.html.textile.liquid
- user/examples/crunch-examples.html.textile.liquid
- - user/topics/arv-sync-groups.html.textile.liquid
- - Query the metadata database:
- user/topics/tutorial-trait-search.html.textile.liquid
- - Arvados License:
- - user/copying/copying.html.textile.liquid
- - user/copying/agpl-3.0.html
- - user/copying/LICENSE-2.0.html
- - user/copying/by-sa-3.0.html
sdk:
- Overview:
- sdk/index.html.textile.liquid
- sdk/python/sdk-python.html.textile.liquid
- sdk/python/example.html.textile.liquid
- sdk/python/python.html.textile.liquid
- - sdk/python/crunch-utility-libraries.html.textile.liquid
+ - sdk/python/arvados-fuse.html.textile.liquid
- sdk/python/events.html.textile.liquid
- sdk/python/cookbook.html.textile.liquid
+ - sdk/python/crunch-utility-libraries.html.textile.liquid
- CLI:
- sdk/cli/install.html.textile.liquid
- sdk/cli/index.html.textile.liquid
- Go:
- sdk/go/index.html.textile.liquid
- sdk/go/example.html.textile.liquid
+ - R:
+ - sdk/R/index.html.md
+ - sdk/R/arvados/index.html.textile.liquid
- Perl:
- sdk/perl/index.html.textile.liquid
- sdk/perl/example.html.textile.liquid
- Ruby:
- sdk/ruby/index.html.textile.liquid
- sdk/ruby/example.html.textile.liquid
- - Java:
+ - Java v2:
+ - sdk/java-v2/index.html.textile.liquid
+ - sdk/java-v2/example.html.textile.liquid
+ - sdk/java-v2/javadoc.html.textile.liquid
+ - Java v1:
- sdk/java/index.html.textile.liquid
- sdk/java/example.html.textile.liquid
api:
- api/requests.html.textile.liquid
- api/methods.html.textile.liquid
- api/resources.html.textile.liquid
- - api/permission-model.html.textile.liquid
- - api/storage.html.textile.liquid
- - api/execution.html.textile.liquid
- Permission and authentication:
- api/methods/api_client_authorizations.html.textile.liquid
- api/methods/api_clients.html.textile.liquid
- api/methods/humans.html.textile.liquid
- api/methods/specimens.html.textile.liquid
- api/methods/traits.html.textile.liquid
+ architecture:
+ - Topics:
+ - architecture/index.html.textile.liquid
+ - api/storage.html.textile.liquid
+ - api/execution.html.textile.liquid
+ - api/permission-model.html.textile.liquid
+ - architecture/federation.html.textile.liquid
+ admin:
+ - Topics:
+ - admin/index.html.textile.liquid
+ - Configuration:
+ - admin/config.html.textile.liquid
+ - Upgrading and migrations:
+ - admin/upgrading.html.textile.liquid
+ - admin/config-migration.html.textile.liquid
+ - install/migrate-docker19.html.textile.liquid
+ - admin/upgrade-crunch2.html.textile.liquid
+ - Users and Groups:
+ - install/cheat_sheet.html.textile.liquid
+ - admin/activation.html.textile.liquid
+ - admin/merge-remote-account.html.textile.liquid
+ - admin/migrating-providers.html.textile.liquid
+ - user/topics/arvados-sync-groups.html.textile.liquid
+ - Monitoring:
+ - admin/health-checks.html.textile.liquid
+ - admin/metrics.html.textile.liquid
+ - admin/management-token.html.textile.liquid
+ - Cloud:
+ - admin/storage-classes.html.textile.liquid
+ - admin/spot-instances.html.textile.liquid
+ - Other:
+ - admin/collection-versioning.html.textile.liquid
+ - admin/federation.html.textile.liquid
+ - admin/controlling-container-reuse.html.textile.liquid
+ - admin/logs-table-management.html.textile.liquid
installguide:
- Overview:
- install/index.html.textile.liquid
- Docker quick start:
- install/arvbox.html.textile.liquid
+ - Arvados on Kubernetes:
+ - install/arvados-on-kubernetes.html.textile.liquid
- Manual installation:
- install/install-manual-prerequisites.html.textile.liquid
+ - install/install-components.html.textile.liquid
+ - Core:
- install/install-postgresql.html.textile.liquid
- - install/install-sso.html.textile.liquid
- install/install-api-server.html.textile.liquid
- - install/install-ws.html.textile.liquid
- - install/install-arv-git-httpd.html.textile.liquid
- - install/install-workbench-app.html.textile.liquid
- - install/install-shell-server.html.textile.liquid
- - install/create-standard-objects.html.textile.liquid
+ - install/install-controller.html.textile.liquid
+ - Keep:
- install/install-keepstore.html.textile.liquid
+ - install/configure-fs-storage.html.textile.liquid
+ - install/configure-s3-object-storage.html.textile.liquid
- install/configure-azure-blob-storage.html.textile.liquid
- install/install-keepproxy.html.textile.liquid
- install/install-keep-web.html.textile.liquid
- install/install-keep-balance.html.textile.liquid
+ - User interface:
+ - install/install-sso.html.textile.liquid
+ - install/install-workbench-app.html.textile.liquid
+ - install/install-composer.html.textile.liquid
+ - Additional services:
+ - install/install-ws.html.textile.liquid
+ - install/install-shell-server.html.textile.liquid
+ - install/install-arv-git-httpd.html.textile.liquid
- Containers API support on SLURM:
- install/crunch2-slurm/install-prerequisites.html.textile.liquid
- install/crunch2-slurm/install-slurm.html.textile.liquid
- install/crunch2-slurm/install-test.html.textile.liquid
- install/install-nodemanager.html.textile.liquid
- install/install-compute-ping.html.textile.liquid
+ - Containers API support on cloud (experimental):
+ - install/install-dispatch-cloud.html.textile.liquid
- Jobs API support (deprecated):
- install/install-crunch-dispatch.html.textile.liquid
- install/install-compute-node.html.textile.liquid
- - Helpful hints:
- - install/copy_pipeline_from_curoverse.html.textile.liquid
- - install/cheat_sheet.html.textile.liquid
- - Migrating from Docker 1.9:
- - install/migrate-docker19.html.textile.liquid
projects / arvados.git / blobdiff