"net"
"os"
"os/exec"
- "path/filepath"
"runtime/pprof"
"sort"
"strings"
var _ = Suite(&TestSuite{})
type TestSuite struct {
+ client *arvados.Client
docker *TestDockerClient
+ runner *ContainerRunner
}
func (s *TestSuite) SetUpTest(c *C) {
+ s.client = arvados.NewClientFromEnv()
s.docker = NewTestDockerClient()
}
Calls int
Content []arvadosclient.Dict
arvados.Container
- Logs map[string]*bytes.Buffer
+ secretMounts []byte
+ Logs map[string]*bytes.Buffer
sync.Mutex
WasSetRunning bool
callraw bool
api *ArvTestClient
realTemp string
calledWait bool
+ ctrExited bool
}
func NewTestDockerClient() *TestDockerClient {
return body, err
}
+func (t *TestDockerClient) ContainerInspect(ctx context.Context, id string) (c dockertypes.ContainerJSON, err error) {
+ c.ContainerJSONBase = &dockertypes.ContainerJSONBase{}
+ c.ID = "abcde"
+ if t.ctrExited {
+ c.State = &dockertypes.ContainerState{Status: "exited", Dead: true}
+ } else {
+ c.State = &dockertypes.ContainerState{Status: "running", Pid: 1234, Running: true}
+ }
+ return
+}
+
func (t *TestDockerClient) ImageInspectWithRaw(ctx context.Context, image string) (dockertypes.ImageInspect, []byte, error) {
if t.exitCode == 2 {
return dockertypes.ImageInspect{}, nil, fmt.Errorf("Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?")
mt := parameters["collection"].(arvadosclient.Dict)["manifest_text"].(string)
outmap := output.(*arvados.Collection)
outmap.PortableDataHash = fmt.Sprintf("%x+%d", md5.Sum([]byte(mt)), len(mt))
+ outmap.UUID = fmt.Sprintf("zzzzz-4zz18-%15.15x", md5.Sum([]byte(mt)))
}
return nil
"uuid": "`+fakeAuthUUID+`",
"api_token": "`+fakeAuthToken+`"
}`), output)
+ case method == "GET" && resourceType == "containers" && action == "secret_mounts":
+ if client.secretMounts != nil {
+ return json.Unmarshal(client.secretMounts, output)
+ } else {
+ return json.Unmarshal([]byte(`{"secret_mounts":{}}`), output)
+ }
default:
return fmt.Errorf("Not found")
}
if parameters["container"].(arvadosclient.Dict)["state"] == "Running" {
client.WasSetRunning = true
}
+ } else if resourceType == "collections" {
+ mt := parameters["collection"].(arvadosclient.Dict)["manifest_text"].(string)
+ output.(*arvados.Collection).UUID = uuid
+ output.(*arvados.Collection).PortableDataHash = fmt.Sprintf("%x", md5.Sum([]byte(mt)))
}
return nil
}
return nil
}
-func (client *KeepTestClient) PutHB(hash string, buf []byte) (string, int, error) {
+func (client *KeepTestClient) PutB(buf []byte) (string, int, error) {
client.Content = buf
- return fmt.Sprintf("%s+%d", hash, len(buf)), len(buf), nil
+ return fmt.Sprintf("%x+%d", md5.Sum(buf), len(buf)), len(buf), nil
}
-func (*KeepTestClient) ClearBlockCache() {
+func (client *KeepTestClient) ReadAt(string, []byte, int) (int, error) {
+ return 0, errors.New("not implemented")
+}
+
+func (client *KeepTestClient) ClearBlockCache() {
+}
+
+func (client *KeepTestClient) Close() {
+ client.Content = nil
}
type FileWrapper struct {
return 0, errors.New("not implemented")
}
+func (fw FileWrapper) Sync() error {
+ return errors.New("not implemented")
+}
+
func (client *KeepTestClient) ManifestFileReader(m manifest.Manifest, filename string) (arvados.File, error) {
if filename == hwImageId+".tar" {
rdr := ioutil.NopCloser(&bytes.Buffer{})
func (s *TestSuite) TestLoadImage(c *C) {
kc := &KeepTestClient{}
- cr := NewContainerRunner(&ArvTestClient{}, kc, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ defer kc.Close()
+ cr, err := NewContainerRunner(s.client, &ArvTestClient{}, kc, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
- _, err := cr.Docker.ImageRemove(nil, hwImageId, dockertypes.ImageRemoveOptions{})
+ _, err = cr.Docker.ImageRemove(nil, hwImageId, dockertypes.ImageRemoveOptions{})
+ c.Check(err, IsNil)
_, _, err = cr.Docker.ImageInspectWithRaw(nil, hwImageId)
c.Check(err, NotNil)
return discoveryMap[key], nil
}
-type KeepErrorTestClient struct{}
-
-func (KeepErrorTestClient) PutHB(hash string, buf []byte) (string, int, error) {
- return "", 0, errors.New("KeepError")
+type KeepErrorTestClient struct {
+ KeepTestClient
}
-func (KeepErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (arvados.File, error) {
+func (*KeepErrorTestClient) ManifestFileReader(manifest.Manifest, string) (arvados.File, error) {
return nil, errors.New("KeepError")
}
-func (KeepErrorTestClient) ClearBlockCache() {
+func (*KeepErrorTestClient) PutB(buf []byte) (string, int, error) {
+ return "", 0, errors.New("KeepError")
}
-type KeepReadErrorTestClient struct{}
-
-func (KeepReadErrorTestClient) PutHB(hash string, buf []byte) (string, int, error) {
- return "", 0, nil
+type KeepReadErrorTestClient struct {
+ KeepTestClient
}
-func (KeepReadErrorTestClient) ClearBlockCache() {
+func (*KeepReadErrorTestClient) ReadAt(string, []byte, int) (int, error) {
+ return 0, errors.New("KeepError")
}
type ErrorReader struct {
func (s *TestSuite) TestLoadImageArvError(c *C) {
// (1) Arvados error
- cr := NewContainerRunner(ArvErrorTestClient{}, &KeepTestClient{}, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ kc := &KeepTestClient{}
+ defer kc.Close()
+ cr, err := NewContainerRunner(s.client, ArvErrorTestClient{}, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
cr.Container.ContainerImage = hwPDH
- err := cr.LoadImage()
+ err = cr.LoadImage()
c.Check(err.Error(), Equals, "While getting container image collection: ArvError")
}
func (s *TestSuite) TestLoadImageKeepError(c *C) {
// (2) Keep error
- cr := NewContainerRunner(&ArvTestClient{}, KeepErrorTestClient{}, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ cr, err := NewContainerRunner(s.client, &ArvTestClient{}, &KeepErrorTestClient{}, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
cr.Container.ContainerImage = hwPDH
- err := cr.LoadImage()
+ err = cr.LoadImage()
+ c.Assert(err, NotNil)
c.Check(err.Error(), Equals, "While creating ManifestFileReader for container image: KeepError")
}
func (s *TestSuite) TestLoadImageCollectionError(c *C) {
// (3) Collection doesn't contain image
- cr := NewContainerRunner(&ArvTestClient{}, KeepErrorTestClient{}, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ cr, err := NewContainerRunner(s.client, &ArvTestClient{}, &KeepReadErrorTestClient{}, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
cr.Container.ContainerImage = otherPDH
- err := cr.LoadImage()
+ err = cr.LoadImage()
c.Check(err.Error(), Equals, "First file in the container image collection does not end in .tar")
}
func (s *TestSuite) TestLoadImageKeepReadError(c *C) {
// (4) Collection doesn't contain image
- cr := NewContainerRunner(&ArvTestClient{}, KeepReadErrorTestClient{}, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ cr, err := NewContainerRunner(s.client, &ArvTestClient{}, &KeepReadErrorTestClient{}, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
cr.Container.ContainerImage = hwPDH
- err := cr.LoadImage()
+ err = cr.LoadImage()
c.Check(err, NotNil)
}
Stderr ClosableBuffer
}
-func (tl *TestLogs) NewTestLoggingWriter(logstr string) io.WriteCloser {
+func (tl *TestLogs) NewTestLoggingWriter(logstr string) (io.WriteCloser, error) {
if logstr == "stdout" {
- return &tl.Stdout
+ return &tl.Stdout, nil
}
if logstr == "stderr" {
- return &tl.Stderr
+ return &tl.Stderr, nil
}
- return nil
+ return nil, errors.New("???")
}
func dockerLog(fd byte, msg string) []byte {
t.logWriter.Write(dockerLog(1, "Hello world\n"))
t.logWriter.Close()
}
- cr := NewContainerRunner(&ArvTestClient{}, &KeepTestClient{}, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ kc := &KeepTestClient{}
+ defer kc.Close()
+ cr, err := NewContainerRunner(s.client, &ArvTestClient{}, kc, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
var logs TestLogs
cr.NewLogWriter = logs.NewTestLoggingWriter
cr.Container.ContainerImage = hwPDH
cr.Container.Command = []string{"./hw"}
- err := cr.LoadImage()
+ err = cr.LoadImage()
c.Check(err, IsNil)
err = cr.CreateContainer()
func (s *TestSuite) TestCommitLogs(c *C) {
api := &ArvTestClient{}
kc := &KeepTestClient{}
- cr := NewContainerRunner(api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ defer kc.Close()
+ cr, err := NewContainerRunner(s.client, api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
cr.CrunchLog.Timestamper = (&TestTimestamper{}).Timestamp
cr.CrunchLog.Print("Hello world!")
cr.CrunchLog.Print("Goodbye")
cr.finalState = "Complete"
- err := cr.CommitLogs()
+ err = cr.CommitLogs()
c.Check(err, IsNil)
c.Check(api.Calls, Equals, 2)
func (s *TestSuite) TestUpdateContainerRunning(c *C) {
api := &ArvTestClient{}
kc := &KeepTestClient{}
- cr := NewContainerRunner(api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ defer kc.Close()
+ cr, err := NewContainerRunner(s.client, api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
- err := cr.UpdateContainerRunning()
+ err = cr.UpdateContainerRunning()
c.Check(err, IsNil)
c.Check(api.Content[0]["container"].(arvadosclient.Dict)["state"], Equals, "Running")
func (s *TestSuite) TestUpdateContainerComplete(c *C) {
api := &ArvTestClient{}
kc := &KeepTestClient{}
- cr := NewContainerRunner(api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ defer kc.Close()
+ cr, err := NewContainerRunner(s.client, api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
cr.LogsPDH = new(string)
*cr.LogsPDH = "d3a229d2fe3690c2c3e75a71a153c6a3+60"
*cr.ExitCode = 42
cr.finalState = "Complete"
- err := cr.UpdateContainerFinal()
+ err = cr.UpdateContainerFinal()
c.Check(err, IsNil)
c.Check(api.Content[0]["container"].(arvadosclient.Dict)["log"], Equals, *cr.LogsPDH)
func (s *TestSuite) TestUpdateContainerCancelled(c *C) {
api := &ArvTestClient{}
kc := &KeepTestClient{}
- cr := NewContainerRunner(api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ defer kc.Close()
+ cr, err := NewContainerRunner(s.client, api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
cr.cCancelled = true
cr.finalState = "Cancelled"
- err := cr.UpdateContainerFinal()
+ err = cr.UpdateContainerFinal()
c.Check(err, IsNil)
c.Check(api.Content[0]["container"].(arvadosclient.Dict)["log"], IsNil)
err := json.Unmarshal([]byte(record), &rec)
c.Check(err, IsNil)
+ var sm struct {
+ SecretMounts map[string]arvados.Mount `json:"secret_mounts"`
+ }
+ err = json.Unmarshal([]byte(record), &sm)
+ c.Check(err, IsNil)
+ secretMounts, err := json.Marshal(sm)
+ c.Logf("%s %q", sm, secretMounts)
+ c.Check(err, IsNil)
+
s.docker.exitCode = exitCode
s.docker.fn = fn
s.docker.ImageRemove(nil, hwImageId, dockertypes.ImageRemoveOptions{})
api = &ArvTestClient{Container: rec}
s.docker.api = api
- cr = NewContainerRunner(api, &KeepTestClient{}, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ kc := &KeepTestClient{}
+ defer kc.Close()
+ cr, err = NewContainerRunner(s.client, api, kc, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
+ s.runner = cr
cr.statInterval = 100 * time.Millisecond
+ cr.containerWatchdogInterval = time.Second
am := &ArvMountCmdLine{}
cr.RunArvMount = am.ArvMountTest
}
return d, err
}
+ cr.MkArvClient = func(token string) (IArvadosClient, error) {
+ return &ArvTestClient{secretMounts: secretMounts}, nil
+ }
if extraMounts != nil && len(extraMounts) > 0 {
err := cr.SetupArvMountPoint("keep")
"mounts": {"/tmp": {"kind": "tmp"} },
"output_path": "/tmp",
"priority": 1,
- "runtime_constraints": {}
+ "runtime_constraints": {}
}`, nil, 0, func(t *TestDockerClient) {
t.logWriter.Write(dockerLog(1, "hello world\n"))
t.logWriter.Close()
}
+func (s *TestSuite) TestRunTimeExceeded(c *C) {
+ api, _, _ := s.fullRunHelper(c, `{
+ "command": ["sleep", "3"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {},
+ "scheduling_parameters":{"max_run_time": 1}
+}`, nil, 0, func(t *TestDockerClient) {
+ time.Sleep(3 * time.Second)
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.state", "Cancelled"), NotNil)
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*maximum run time exceeded.*")
+}
+
+func (s *TestSuite) TestContainerWaitFails(c *C) {
+ api, _, _ := s.fullRunHelper(c, `{
+ "command": ["sleep", "3"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1
+}`, nil, 0, func(t *TestDockerClient) {
+ t.ctrExited = true
+ time.Sleep(10 * time.Second)
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.state", "Cancelled"), NotNil)
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*Container is not running.*")
+}
+
func (s *TestSuite) TestCrunchstat(c *C) {
api, _, _ := s.fullRunHelper(c, `{
"command": ["sleep", "1"],
s.docker.ImageRemove(nil, hwImageId, dockertypes.ImageRemoveOptions{})
api := &ArvTestClient{Container: rec}
- cr := NewContainerRunner(api, &KeepTestClient{}, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ kc := &KeepTestClient{}
+ defer kc.Close()
+ cr, err := NewContainerRunner(s.client, api, kc, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
cr.RunArvMount = func([]string, string) (*exec.Cmd, error) { return nil, nil }
+ cr.MkArvClient = func(token string) (IArvadosClient, error) {
+ return &ArvTestClient{}, nil
+ }
setup(cr)
done := make(chan error)
func (s *TestSuite) TestSetupMounts(c *C) {
api := &ArvTestClient{}
kc := &KeepTestClient{}
- cr := NewContainerRunner(api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ defer kc.Close()
+ cr, err := NewContainerRunner(s.client, api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
am := &ArvMountCmdLine{}
cr.RunArvMount = am.ArvMountTest
c.Assert(err, IsNil)
stubCertPath := stubCert(certTemp)
+ cr.parentTemp = realTemp
+
defer os.RemoveAll(realTemp)
defer os.RemoveAll(certTemp)
}
checkEmpty := func() {
- filepath.Walk(realTemp, func(path string, _ os.FileInfo, err error) error {
- c.Check(path, Equals, realTemp)
- c.Check(err, IsNil)
- return nil
- })
+ // Should be deleted.
+ _, err := os.Stat(realTemp)
+ c.Assert(os.IsNotExist(err), Equals, true)
+
+ // Now recreate it for the next test.
+ c.Assert(os.Mkdir(realTemp, 0777), IsNil)
}
{
cr.ArvMountPoint = ""
cr.Container.Mounts = make(map[string]arvados.Mount)
cr.Container.Mounts["/tmp"] = arvados.Mount{Kind: "tmp"}
- cr.OutputPath = "/tmp"
+ cr.Container.OutputPath = "/tmp"
cr.statInterval = 5 * time.Second
err := cr.SetupMounts()
c.Check(err, IsNil)
c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
"--read-write", "--crunchstat-interval=5",
"--mount-by-pdh", "by_id", realTemp + "/keep1"})
- c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/tmp"})
+ c.Check(cr.Binds, DeepEquals, []string{realTemp + "/tmp2:/tmp"})
os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
cr.Container.Mounts = make(map[string]arvados.Mount)
cr.Container.Mounts["/out"] = arvados.Mount{Kind: "tmp"}
cr.Container.Mounts["/tmp"] = arvados.Mount{Kind: "tmp"}
- cr.OutputPath = "/out"
+ cr.Container.OutputPath = "/out"
err := cr.SetupMounts()
c.Check(err, IsNil)
c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
"--read-write", "--crunchstat-interval=5",
"--mount-by-pdh", "by_id", realTemp + "/keep1"})
- c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/out", realTemp + "/3:/tmp"})
+ c.Check(cr.Binds, DeepEquals, []string{realTemp + "/tmp2:/out", realTemp + "/tmp3:/tmp"})
os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
cr.ArvMountPoint = ""
cr.Container.Mounts = make(map[string]arvados.Mount)
cr.Container.Mounts["/tmp"] = arvados.Mount{Kind: "tmp"}
- cr.OutputPath = "/tmp"
+ cr.Container.OutputPath = "/tmp"
apiflag := true
cr.Container.RuntimeConstraints.API = &apiflag
c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
"--read-write", "--crunchstat-interval=5",
"--mount-by-pdh", "by_id", realTemp + "/keep1"})
- c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/tmp", stubCertPath + ":/etc/arvados/ca-certificates.crt:ro"})
+ c.Check(cr.Binds, DeepEquals, []string{realTemp + "/tmp2:/tmp", stubCertPath + ":/etc/arvados/ca-certificates.crt:ro"})
os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
cr.Container.Mounts = map[string]arvados.Mount{
"/keeptmp": {Kind: "collection", Writable: true},
}
- cr.OutputPath = "/keeptmp"
+ cr.Container.OutputPath = "/keeptmp"
os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm)
"/keepinp": {Kind: "collection", PortableDataHash: "59389a8f9ee9d399be35462a0f92541c+53"},
"/keepout": {Kind: "collection", Writable: true},
}
- cr.OutputPath = "/keepout"
+ cr.Container.OutputPath = "/keepout"
os.MkdirAll(realTemp+"/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53", os.ModePerm)
os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm)
"/keepinp": {Kind: "collection", PortableDataHash: "59389a8f9ee9d399be35462a0f92541c+53"},
"/keepout": {Kind: "collection", Writable: true},
}
- cr.OutputPath = "/keepout"
+ cr.Container.OutputPath = "/keepout"
os.MkdirAll(realTemp+"/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53", os.ModePerm)
os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm)
err := cr.SetupMounts()
c.Check(err, IsNil)
sort.StringSlice(cr.Binds).Sort()
- c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2/mountdata.json:/mnt/test.json:ro"})
- content, err := ioutil.ReadFile(realTemp + "/2/mountdata.json")
+ c.Check(cr.Binds, DeepEquals, []string{realTemp + "/json2/mountdata.json:/mnt/test.json:ro"})
+ content, err := ioutil.ReadFile(realTemp + "/json2/mountdata.json")
c.Check(err, IsNil)
c.Check(content, DeepEquals, []byte(test.out))
os.RemoveAll(cr.ArvMountPoint)
checkEmpty()
}
+ for _, test := range []struct {
+ in interface{}
+ out string
+ }{
+ {in: "foo", out: `foo`},
+ {in: nil, out: "error"},
+ {in: map[string]int64{"foo": 123456789123456789}, out: "error"},
+ } {
+ i = 0
+ cr.ArvMountPoint = ""
+ cr.Container.Mounts = map[string]arvados.Mount{
+ "/mnt/test.txt": {Kind: "text", Content: test.in},
+ }
+ err := cr.SetupMounts()
+ if test.out == "error" {
+ c.Check(err.Error(), Equals, "content for mount \"/mnt/test.txt\" must be a string")
+ } else {
+ c.Check(err, IsNil)
+ sort.StringSlice(cr.Binds).Sort()
+ c.Check(cr.Binds, DeepEquals, []string{realTemp + "/text2/mountdata.text:/mnt/test.txt:ro"})
+ content, err := ioutil.ReadFile(realTemp + "/text2/mountdata.text")
+ c.Check(err, IsNil)
+ c.Check(content, DeepEquals, []byte(test.out))
+ }
+ os.RemoveAll(cr.ArvMountPoint)
+ cr.CleanupDirs()
+ checkEmpty()
+ }
+
// Read-only mount points are allowed underneath output_dir mount point
{
i = 0
"/tmp": {Kind: "tmp"},
"/tmp/foo": {Kind: "collection"},
}
- cr.OutputPath = "/tmp"
+ cr.Container.OutputPath = "/tmp"
os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm)
c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
"--read-write", "--crunchstat-interval=5",
"--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
- c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/tmp", realTemp + "/keep1/tmp0:/tmp/foo:ro"})
+ c.Check(cr.Binds, DeepEquals, []string{realTemp + "/tmp2:/tmp", realTemp + "/keep1/tmp0:/tmp/foo:ro"})
os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
Path: "baz",
Writable: true},
}
- cr.OutputPath = "/tmp"
+ cr.Container.OutputPath = "/tmp"
os.MkdirAll(realTemp+"/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53", os.ModePerm)
os.MkdirAll(realTemp+"/keep1/by_id/59389a8f9ee9d399be35462a0f92541d+53/baz", os.ModePerm)
cr.Container.Mounts = make(map[string]arvados.Mount)
cr.Container.Mounts = map[string]arvados.Mount{
"/tmp": {Kind: "tmp"},
- "/tmp/foo": {Kind: "json"},
+ "/tmp/foo": {Kind: "tmp"},
}
- cr.OutputPath = "/tmp"
+ cr.Container.OutputPath = "/tmp"
err := cr.SetupMounts()
c.Check(err, NotNil)
- c.Check(err, ErrorMatches, `Only mount points of kind 'collection' are supported underneath the output_path.*`)
+ c.Check(err, ErrorMatches, `Only mount points of kind 'collection', 'text' or 'json' are supported underneath the output_path.*`)
os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
Path: "/",
},
}
- cr.OutputPath = "/tmp"
+ cr.Container.OutputPath = "/tmp"
err := cr.SetupMounts()
c.Check(err, IsNil)
s.docker.ImageRemove(nil, hwImageId, dockertypes.ImageRemoveOptions{})
api = &ArvTestClient{Container: rec}
- cr = NewContainerRunner(api, &KeepTestClient{}, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ kc := &KeepTestClient{}
+ defer kc.Close()
+ cr, err = NewContainerRunner(s.client, api, kc, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
am := &ArvMountCmdLine{}
cr.RunArvMount = am.ArvMountTest
+ cr.MkArvClient = func(token string) (IArvadosClient, error) {
+ return &ArvTestClient{}, nil
+ }
err = cr.Run()
return
}
func (s *TestSuite) TestFullRunWithAPI(c *C) {
+ defer os.Setenv("ARVADOS_API_HOST", os.Getenv("ARVADOS_API_HOST"))
os.Setenv("ARVADOS_API_HOST", "test.arvados.org")
- defer os.Unsetenv("ARVADOS_API_HOST")
api, _, _ := s.fullRunHelper(c, `{
"command": ["/bin/sh", "-c", "echo $ARVADOS_API_HOST"],
"container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
}
func (s *TestSuite) TestFullRunSetOutput(c *C) {
+ defer os.Setenv("ARVADOS_API_HOST", os.Getenv("ARVADOS_API_HOST"))
os.Setenv("ARVADOS_API_HOST", "test.arvados.org")
- defer os.Unsetenv("ARVADOS_API_HOST")
api, _, _ := s.fullRunHelper(c, `{
"command": ["/bin/sh", "-c", "echo $ARVADOS_API_HOST"],
"container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
t.logWriter.Close()
})
- c.Check(runner.Binds, DeepEquals, []string{realtemp + "/2:/tmp",
+ c.Check(runner.Binds, DeepEquals, []string{realtemp + "/tmp2:/tmp",
realtemp + "/keep1/by_id/a0def87f80dd594d4675809e83bd4f15+367/file2_in_main.txt:/tmp/foo/bar:ro",
realtemp + "/keep1/by_id/a0def87f80dd594d4675809e83bd4f15+367/subdir1/subdir2/file2_in_subdir2.txt:/tmp/foo/baz/sub2file2:ro",
realtemp + "/keep1/by_id/a0def87f80dd594d4675809e83bd4f15+367/subdir1:/tmp/foo/sub1:ro",
manifest := collection["manifest_text"].(string)
c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out
-./foo 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 9:18:bar 9:18:sub1file2
+./foo 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 9:18:bar 36:18:sub1file2
./foo/baz 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 9:18:sub2file2
./foo/sub1 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt
./foo/sub1/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt
"environment": {"FROBIZ": "bilbo"},
"mounts": {
"/tmp": {"kind": "tmp"},
- "/tmp/foo/bar": {"kind": "collection", "portable_data_hash": "b0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt"},
+ "/tmp/foo/bar": {"kind": "collection", "portable_data_hash": "b0def87f80dd594d4675809e83bd4f15+367", "path": "/subdir1/file2_in_subdir1.txt"},
"stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
},
"output_path": "/tmp",
}
}
-func (s *TestSuite) TestOutputSymlinkToInput(c *C) {
- helperRecord := `{
- "command": ["/bin/sh", "-c", "echo $FROBIZ"],
- "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
- "cwd": "/bin",
- "environment": {"FROBIZ": "bilbo"},
- "mounts": {
- "/tmp": {"kind": "tmp"},
- "/keep/foo/sub1file2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path": "/subdir1/file2_in_subdir1.txt"},
- "/keep/foo2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367"}
- },
- "output_path": "/tmp",
- "priority": 1,
- "runtime_constraints": {}
- }`
-
- extraMounts := []string{
- "a0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt",
- }
-
- api, _, _ := s.fullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
- os.Symlink("/keep/foo/sub1file2", t.realTemp+"/2/baz")
- os.Symlink("/keep/foo2/subdir1/file2_in_subdir1.txt", t.realTemp+"/2/baz2")
- os.Symlink("/keep/foo2/subdir1", t.realTemp+"/2/baz3")
- os.Mkdir(t.realTemp+"/2/baz4", 0700)
- os.Symlink("/keep/foo2/subdir1/file2_in_subdir1.txt", t.realTemp+"/2/baz4/baz5")
- t.logWriter.Close()
- })
-
- c.Check(api.CalledWith("container.exit_code", 0), NotNil)
- c.Check(api.CalledWith("container.state", "Complete"), NotNil)
- for _, v := range api.Content {
- if v["collection"] != nil {
- collection := v["collection"].(arvadosclient.Dict)
- if strings.Index(collection["name"].(string), "output") == 0 {
- manifest := collection["manifest_text"].(string)
- c.Check(manifest, Equals, `. 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 9:18:baz 9:18:baz2
-./baz3 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt
-./baz3/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt
-./baz4 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 9:18:baz5
-`)
- }
- }
- }
-}
-
func (s *TestSuite) TestOutputError(c *C) {
helperRecord := `{
"command": ["/bin/sh", "-c", "echo $FROBIZ"],
extraMounts := []string{}
api, _, _ := s.fullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
- os.Symlink("/etc/hosts", t.realTemp+"/2/baz")
+ os.Symlink("/etc/hosts", t.realTemp+"/tmp2/baz")
t.logWriter.Close()
})
c.Check(api.CalledWith("container.state", "Cancelled"), NotNil)
}
-func (s *TestSuite) TestOutputSymlinkToOutput(c *C) {
- helperRecord := `{
- "command": ["/bin/sh", "-c", "echo $FROBIZ"],
- "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
- "cwd": "/bin",
- "environment": {"FROBIZ": "bilbo"},
- "mounts": {
- "/tmp": {"kind": "tmp"}
- },
- "output_path": "/tmp",
- "priority": 1,
- "runtime_constraints": {}
- }`
-
- extraMounts := []string{}
-
- api, _, _ := s.fullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
- rf, _ := os.Create(t.realTemp + "/2/realfile")
- rf.Write([]byte("foo"))
- rf.Close()
-
- os.Mkdir(t.realTemp+"/2/realdir", 0700)
- rf, _ = os.Create(t.realTemp + "/2/realdir/subfile")
- rf.Write([]byte("bar"))
- rf.Close()
-
- os.Symlink("/tmp/realfile", t.realTemp+"/2/file1")
- os.Symlink("realfile", t.realTemp+"/2/file2")
- os.Symlink("/tmp/file1", t.realTemp+"/2/file3")
- os.Symlink("file2", t.realTemp+"/2/file4")
- os.Symlink("realdir", t.realTemp+"/2/dir1")
- os.Symlink("/tmp/realdir", t.realTemp+"/2/dir2")
- t.logWriter.Close()
- })
-
- c.Check(api.CalledWith("container.exit_code", 0), NotNil)
- c.Check(api.CalledWith("container.state", "Complete"), NotNil)
- for _, v := range api.Content {
- if v["collection"] != nil {
- collection := v["collection"].(arvadosclient.Dict)
- if strings.Index(collection["name"].(string), "output") == 0 {
- manifest := collection["manifest_text"].(string)
- c.Check(manifest, Equals,
- `. 7a2c86e102dcc231bd232aad99686dfa+15 0:3:file1 3:3:file2 6:3:file3 9:3:file4 12:3:realfile
-./dir1 37b51d194a7513e45b56f6524f2d51f2+3 0:3:subfile
-./dir2 37b51d194a7513e45b56f6524f2d51f2+3 0:3:subfile
-./realdir 37b51d194a7513e45b56f6524f2d51f2+3 0:3:subfile
-`)
- }
- }
- }
-}
-
func (s *TestSuite) TestStdinCollectionMountPoint(c *C) {
helperRecord := `{
"command": ["/bin/sh", "-c", "echo $FROBIZ"],
}
func (s *TestSuite) TestNumberRoundTrip(c *C) {
- cr := NewContainerRunner(&ArvTestClient{callraw: true}, &KeepTestClient{}, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ kc := &KeepTestClient{}
+ defer kc.Close()
+ cr, err := NewContainerRunner(s.client, &ArvTestClient{callraw: true}, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ c.Assert(err, IsNil)
cr.fetchContainerRecord()
jsondata, err := json.Marshal(cr.Container.Mounts["/json"].Content)
c.Check(string(jsondata), Equals, `{"number":123456789123456789}`)
}
-func (s *TestSuite) TestEvalSymlinks(c *C) {
- cr := NewContainerRunner(&ArvTestClient{callraw: true}, &KeepTestClient{}, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
-
- realTemp, err := ioutil.TempDir("", "crunchrun_test-")
- c.Assert(err, IsNil)
- defer os.RemoveAll(realTemp)
-
- cr.HostOutputDir = realTemp
-
- // Absolute path outside output dir
- os.Symlink("/etc/passwd", realTemp+"/p1")
-
- // Relative outside output dir
- os.Symlink("../zip", realTemp+"/p2")
-
- // Circular references
- os.Symlink("p4", realTemp+"/p3")
- os.Symlink("p5", realTemp+"/p4")
- os.Symlink("p3", realTemp+"/p5")
-
- // Target doesn't exist
- os.Symlink("p99", realTemp+"/p6")
-
- for _, v := range []string{"p1", "p2", "p3", "p4", "p5"} {
- info, err := os.Lstat(realTemp + "/" + v)
- _, _, _, err = cr.derefOutputSymlink(realTemp+"/"+v, info)
- c.Assert(err, NotNil)
- }
-}
-
-func (s *TestSuite) TestEvalSymlinkDir(c *C) {
- cr := NewContainerRunner(&ArvTestClient{callraw: true}, &KeepTestClient{}, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
-
- realTemp, err := ioutil.TempDir("", "crunchrun_test-")
- c.Assert(err, IsNil)
- defer os.RemoveAll(realTemp)
-
- cr.HostOutputDir = realTemp
-
- // Absolute path outside output dir
- os.Symlink(".", realTemp+"/loop")
-
- v := "loop"
- info, err := os.Lstat(realTemp + "/" + v)
- _, err = cr.UploadOutputFile(realTemp+"/"+v, info, err, []string{}, nil, "", "", 0)
- c.Assert(err, NotNil)
-}
-
func (s *TestSuite) TestFullBrokenDocker1(c *C) {
tf, err := ioutil.TempFile("", "brokenNodeHook-")
c.Assert(err, IsNil)
c.Check(api.CalledWith("container.state", "Cancelled"), NotNil)
c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*Possible causes:.*is missing.*")
}
+
+func (s *TestSuite) TestSecretTextMountPoint(c *C) {
+ // under normal mounts, gets captured in output, oops
+ helperRecord := `{
+ "command": ["true"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "mounts": {
+ "/tmp": {"kind": "tmp"},
+ "/tmp/secret.conf": {"kind": "text", "content": "mypassword"}
+ },
+ "secret_mounts": {
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ api, _, _ := s.fullRunHelper(c, helperRecord, nil, 0, func(t *TestDockerClient) {
+ content, err := ioutil.ReadFile(t.realTemp + "/tmp2/secret.conf")
+ c.Check(err, IsNil)
+ c.Check(content, DeepEquals, []byte("mypassword"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ c.Check(api.CalledWith("collection.manifest_text", ". 34819d7beeabb9260a5c854bc85b3e44+10 0:10:secret.conf\n"), NotNil)
+ c.Check(api.CalledWith("collection.manifest_text", ""), IsNil)
+
+ // under secret mounts, not captured in output
+ helperRecord = `{
+ "command": ["true"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "mounts": {
+ "/tmp": {"kind": "tmp"}
+ },
+ "secret_mounts": {
+ "/tmp/secret.conf": {"kind": "text", "content": "mypassword"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ api, _, _ = s.fullRunHelper(c, helperRecord, nil, 0, func(t *TestDockerClient) {
+ content, err := ioutil.ReadFile(t.realTemp + "/tmp2/secret.conf")
+ c.Check(err, IsNil)
+ c.Check(content, DeepEquals, []byte("mypassword"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ c.Check(api.CalledWith("collection.manifest_text", ". 34819d7beeabb9260a5c854bc85b3e44+10 0:10:secret.conf\n"), IsNil)
+ c.Check(api.CalledWith("collection.manifest_text", ""), NotNil)
+}
+
+type FakeProcess struct {
+ cmdLine []string
+}
+
+func (fp FakeProcess) CmdlineSlice() ([]string, error) {
+ return fp.cmdLine, nil
+}
+
+func (s *TestSuite) helpCheckContainerd(c *C, lp func() ([]PsProcess, error)) error {
+ kc := &KeepTestClient{}
+ defer kc.Close()
+ cr, err := NewContainerRunner(s.client, &ArvTestClient{callraw: true}, kc, s.docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ cr.checkContainerd = time.Duration(100 * time.Millisecond)
+ c.Assert(err, IsNil)
+ cr.ListProcesses = lp
+
+ s.docker.fn = func(t *TestDockerClient) {
+ time.Sleep(1 * time.Second)
+ t.logWriter.Close()
+ }
+
+ err = cr.CreateContainer()
+ c.Check(err, IsNil)
+
+ err = cr.StartContainer()
+ c.Check(err, IsNil)
+
+ err = cr.WaitFinish()
+ return err
+
+}
+
+func (s *TestSuite) TestCheckContainerdPresent(c *C) {
+ err := s.helpCheckContainerd(c, func() ([]PsProcess, error) {
+ return []PsProcess{FakeProcess{[]string{"docker-containerd"}}}, nil
+ })
+ c.Check(err, IsNil)
+}
+
+func (s *TestSuite) TestCheckContainerdMissing(c *C) {
+ err := s.helpCheckContainerd(c, func() ([]PsProcess, error) {
+ return []PsProcess{FakeProcess{[]string{"abc"}}}, nil
+ })
+ c.Check(err, ErrorMatches, `'containerd' not found in process list.`)
+}
projects / arvados.git / blobdiff