-source("./R/HttpRequest.R")
-source("./R/HttpParser.R")
-source("./R/custom_classes.R")
+#' users.get
+#'
+#' users.get is a method defined in Arvados class.
+#'
+#' @usage arv$users.get(uuid)
+#' @param uuid The UUID of the User in question.
+#' @return User object.
+#' @name users.get
+NULL
-#' Arvados SDK Object
+#' users.create
+#'
+#' users.create is a method defined in Arvados class.
+#'
+#' @usage arv$users.create(user, ensure_unique_name = "false")
+#' @param user User object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return User object.
+#' @name users.create
+NULL
+
+#' users.update
+#'
+#' users.update is a method defined in Arvados class.
+#'
+#' @usage arv$users.update(user, uuid)
+#' @param user User object.
+#' @param uuid The UUID of the User in question.
+#' @return User object.
+#' @name users.update
+NULL
+
+#' users.delete
+#'
+#' users.delete is a method defined in Arvados class.
+#'
+#' @usage arv$users.delete(uuid)
+#' @param uuid The UUID of the User in question.
+#' @return User object.
+#' @name users.delete
+NULL
+
+#' users.current
+#'
+#' users.current is a method defined in Arvados class.
+#'
+#' @usage arv$users.current(NULL)
+#' @return User object.
+#' @name users.current
+NULL
+
+#' users.system
+#'
+#' users.system is a method defined in Arvados class.
+#'
+#' @usage arv$users.system(NULL)
+#' @return User object.
+#' @name users.system
+NULL
+
+#' users.activate
+#'
+#' users.activate is a method defined in Arvados class.
+#'
+#' @usage arv$users.activate(uuid)
+#' @param uuid
+#' @return User object.
+#' @name users.activate
+NULL
+
+#' users.setup
+#'
+#' users.setup is a method defined in Arvados class.
+#'
+#' @usage arv$users.setup(user = NULL, openid_prefix = NULL,
+#' repo_name = NULL, vm_uuid = NULL, send_notification_email = "false")
+#' @param user
+#' @param openid_prefix
+#' @param repo_name
+#' @param vm_uuid
+#' @param send_notification_email
+#' @return User object.
+#' @name users.setup
+NULL
+
+#' users.unsetup
+#'
+#' users.unsetup is a method defined in Arvados class.
+#'
+#' @usage arv$users.unsetup(uuid)
+#' @param uuid
+#' @return User object.
+#' @name users.unsetup
+NULL
+
+#' users.update_uuid
+#'
+#' users.update_uuid is a method defined in Arvados class.
+#'
+#' @usage arv$users.update_uuid(uuid, new_uuid)
+#' @param uuid
+#' @param new_uuid
+#' @return User object.
+#' @name users.update_uuid
+NULL
+
+#' users.merge
+#'
+#' users.merge is a method defined in Arvados class.
+#'
+#' @usage arv$users.merge(new_owner_uuid,
+#' new_user_token, redirect_to_new_user = NULL)
+#' @param new_owner_uuid
+#' @param new_user_token
+#' @param redirect_to_new_user
+#' @return User object.
+#' @name users.merge
+NULL
+
+#' users.list
+#'
+#' users.list is a method defined in Arvados class.
+#'
+#' @usage arv$users.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return UserList object.
+#' @name users.list
+NULL
+
+#' api_client_authorizations.get
+#'
+#' api_client_authorizations.get is a method defined in Arvados class.
+#'
+#' @usage arv$api_client_authorizations.get(uuid)
+#' @param uuid The UUID of the ApiClientAuthorization in question.
+#' @return ApiClientAuthorization object.
+#' @name api_client_authorizations.get
+NULL
+
+#' api_client_authorizations.create
+#'
+#' api_client_authorizations.create is a method defined in Arvados class.
+#'
+#' @usage arv$api_client_authorizations.create(apiclientauthorization,
+#' ensure_unique_name = "false")
+#' @param apiClientAuthorization ApiClientAuthorization object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return ApiClientAuthorization object.
+#' @name api_client_authorizations.create
+NULL
+
+#' api_client_authorizations.update
+#'
+#' api_client_authorizations.update is a method defined in Arvados class.
+#'
+#' @usage arv$api_client_authorizations.update(apiclientauthorization,
+#' uuid)
+#' @param apiClientAuthorization ApiClientAuthorization object.
+#' @param uuid The UUID of the ApiClientAuthorization in question.
+#' @return ApiClientAuthorization object.
+#' @name api_client_authorizations.update
+NULL
+
+#' api_client_authorizations.delete
+#'
+#' api_client_authorizations.delete is a method defined in Arvados class.
+#'
+#' @usage arv$api_client_authorizations.delete(uuid)
+#' @param uuid The UUID of the ApiClientAuthorization in question.
+#' @return ApiClientAuthorization object.
+#' @name api_client_authorizations.delete
+NULL
+
+#' api_client_authorizations.create_system_auth
+#'
+#' api_client_authorizations.create_system_auth is a method defined in Arvados class.
+#'
+#' @usage arv$api_client_authorizations.create_system_auth(api_client_id = NULL,
+#' scopes = NULL)
+#' @param api_client_id
+#' @param scopes
+#' @return ApiClientAuthorization object.
+#' @name api_client_authorizations.create_system_auth
+NULL
+
+#' api_client_authorizations.current
+#'
+#' api_client_authorizations.current is a method defined in Arvados class.
+#'
+#' @usage arv$api_client_authorizations.current(NULL)
+#' @return ApiClientAuthorization object.
+#' @name api_client_authorizations.current
+NULL
+
+#' api_client_authorizations.list
+#'
+#' api_client_authorizations.list is a method defined in Arvados class.
+#'
+#' @usage arv$api_client_authorizations.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return ApiClientAuthorizationList object.
+#' @name api_client_authorizations.list
+NULL
+
+#' containers.get
+#'
+#' containers.get is a method defined in Arvados class.
+#'
+#' @usage arv$containers.get(uuid)
+#' @param uuid The UUID of the Container in question.
+#' @return Container object.
+#' @name containers.get
+NULL
+
+#' containers.create
+#'
+#' containers.create is a method defined in Arvados class.
+#'
+#' @usage arv$containers.create(container,
+#' ensure_unique_name = "false")
+#' @param container Container object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Container object.
+#' @name containers.create
+NULL
+
+#' containers.update
+#'
+#' containers.update is a method defined in Arvados class.
+#'
+#' @usage arv$containers.update(container,
+#' uuid)
+#' @param container Container object.
+#' @param uuid The UUID of the Container in question.
+#' @return Container object.
+#' @name containers.update
+NULL
+
+#' containers.delete
+#'
+#' containers.delete is a method defined in Arvados class.
+#'
+#' @usage arv$containers.delete(uuid)
+#' @param uuid The UUID of the Container in question.
+#' @return Container object.
+#' @name containers.delete
+NULL
+
+#' containers.auth
+#'
+#' containers.auth is a method defined in Arvados class.
+#'
+#' @usage arv$containers.auth(uuid)
+#' @param uuid
+#' @return Container object.
+#' @name containers.auth
+NULL
+
+#' containers.lock
+#'
+#' containers.lock is a method defined in Arvados class.
+#'
+#' @usage arv$containers.lock(uuid)
+#' @param uuid
+#' @return Container object.
+#' @name containers.lock
+NULL
+
+#' containers.unlock
+#'
+#' containers.unlock is a method defined in Arvados class.
+#'
+#' @usage arv$containers.unlock(uuid)
+#' @param uuid
+#' @return Container object.
+#' @name containers.unlock
+NULL
+
+#' containers.secret_mounts
+#'
+#' containers.secret_mounts is a method defined in Arvados class.
+#'
+#' @usage arv$containers.secret_mounts(uuid)
+#' @param uuid
+#' @return Container object.
+#' @name containers.secret_mounts
+NULL
+
+#' containers.current
+#'
+#' containers.current is a method defined in Arvados class.
+#'
+#' @usage arv$containers.current(NULL)
+#' @return Container object.
+#' @name containers.current
+NULL
+
+#' containers.list
+#'
+#' containers.list is a method defined in Arvados class.
+#'
+#' @usage arv$containers.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return ContainerList object.
+#' @name containers.list
+NULL
+
+#' api_clients.get
+#'
+#' api_clients.get is a method defined in Arvados class.
+#'
+#' @usage arv$api_clients.get(uuid)
+#' @param uuid The UUID of the ApiClient in question.
+#' @return ApiClient object.
+#' @name api_clients.get
+NULL
+
+#' api_clients.create
+#'
+#' api_clients.create is a method defined in Arvados class.
+#'
+#' @usage arv$api_clients.create(apiclient,
+#' ensure_unique_name = "false")
+#' @param apiClient ApiClient object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return ApiClient object.
+#' @name api_clients.create
+NULL
+
+#' api_clients.update
+#'
+#' api_clients.update is a method defined in Arvados class.
+#'
+#' @usage arv$api_clients.update(apiclient,
+#' uuid)
+#' @param apiClient ApiClient object.
+#' @param uuid The UUID of the ApiClient in question.
+#' @return ApiClient object.
+#' @name api_clients.update
+NULL
+
+#' api_clients.delete
+#'
+#' api_clients.delete is a method defined in Arvados class.
+#'
+#' @usage arv$api_clients.delete(uuid)
+#' @param uuid The UUID of the ApiClient in question.
+#' @return ApiClient object.
+#' @name api_clients.delete
+NULL
+
+#' api_clients.list
+#'
+#' api_clients.list is a method defined in Arvados class.
+#'
+#' @usage arv$api_clients.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return ApiClientList object.
+#' @name api_clients.list
+NULL
+
+#' container_requests.get
+#'
+#' container_requests.get is a method defined in Arvados class.
+#'
+#' @usage arv$container_requests.get(uuid)
+#' @param uuid The UUID of the ContainerRequest in question.
+#' @return ContainerRequest object.
+#' @name container_requests.get
+NULL
+
+#' container_requests.create
+#'
+#' container_requests.create is a method defined in Arvados class.
+#'
+#' @usage arv$container_requests.create(containerrequest,
+#' ensure_unique_name = "false")
+#' @param containerRequest ContainerRequest object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return ContainerRequest object.
+#' @name container_requests.create
+NULL
+
+#' container_requests.update
+#'
+#' container_requests.update is a method defined in Arvados class.
+#'
+#' @usage arv$container_requests.update(containerrequest,
+#' uuid)
+#' @param containerRequest ContainerRequest object.
+#' @param uuid The UUID of the ContainerRequest in question.
+#' @return ContainerRequest object.
+#' @name container_requests.update
+NULL
+
+#' container_requests.delete
+#'
+#' container_requests.delete is a method defined in Arvados class.
+#'
+#' @usage arv$container_requests.delete(uuid)
+#' @param uuid The UUID of the ContainerRequest in question.
+#' @return ContainerRequest object.
+#' @name container_requests.delete
+NULL
+
+#' container_requests.list
+#'
+#' container_requests.list is a method defined in Arvados class.
+#'
+#' @usage arv$container_requests.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return ContainerRequestList object.
+#' @name container_requests.list
+NULL
+
+#' authorized_keys.get
+#'
+#' authorized_keys.get is a method defined in Arvados class.
+#'
+#' @usage arv$authorized_keys.get(uuid)
+#' @param uuid The UUID of the AuthorizedKey in question.
+#' @return AuthorizedKey object.
+#' @name authorized_keys.get
+NULL
+
+#' authorized_keys.create
+#'
+#' authorized_keys.create is a method defined in Arvados class.
+#'
+#' @usage arv$authorized_keys.create(authorizedkey,
+#' ensure_unique_name = "false")
+#' @param authorizedKey AuthorizedKey object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return AuthorizedKey object.
+#' @name authorized_keys.create
+NULL
+
+#' authorized_keys.update
+#'
+#' authorized_keys.update is a method defined in Arvados class.
+#'
+#' @usage arv$authorized_keys.update(authorizedkey,
+#' uuid)
+#' @param authorizedKey AuthorizedKey object.
+#' @param uuid The UUID of the AuthorizedKey in question.
+#' @return AuthorizedKey object.
+#' @name authorized_keys.update
+NULL
+
+#' authorized_keys.delete
+#'
+#' authorized_keys.delete is a method defined in Arvados class.
+#'
+#' @usage arv$authorized_keys.delete(uuid)
+#' @param uuid The UUID of the AuthorizedKey in question.
+#' @return AuthorizedKey object.
+#' @name authorized_keys.delete
+NULL
+
+#' authorized_keys.list
+#'
+#' authorized_keys.list is a method defined in Arvados class.
+#'
+#' @usage arv$authorized_keys.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return AuthorizedKeyList object.
+#' @name authorized_keys.list
+NULL
+
+#' collections.get
+#'
+#' collections.get is a method defined in Arvados class.
+#'
+#' @usage arv$collections.get(uuid)
+#' @param uuid The UUID of the Collection in question.
+#' @return Collection object.
+#' @name collections.get
+NULL
+
+#' collections.create
+#'
+#' collections.create is a method defined in Arvados class.
+#'
+#' @usage arv$collections.create(collection,
+#' ensure_unique_name = "false")
+#' @param collection Collection object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Collection object.
+#' @name collections.create
+NULL
+
+#' collections.update
+#'
+#' collections.update is a method defined in Arvados class.
+#'
+#' @usage arv$collections.update(collection,
+#' uuid)
+#' @param collection Collection object.
+#' @param uuid The UUID of the Collection in question.
+#' @return Collection object.
+#' @name collections.update
+NULL
+
+#' collections.delete
+#'
+#' collections.delete is a method defined in Arvados class.
+#'
+#' @usage arv$collections.delete(uuid)
+#' @param uuid The UUID of the Collection in question.
+#' @return Collection object.
+#' @name collections.delete
+NULL
+
+#' collections.provenance
+#'
+#' collections.provenance is a method defined in Arvados class.
+#'
+#' @usage arv$collections.provenance(uuid)
+#' @param uuid
+#' @return Collection object.
+#' @name collections.provenance
+NULL
+
+#' collections.used_by
+#'
+#' collections.used_by is a method defined in Arvados class.
+#'
+#' @usage arv$collections.used_by(uuid)
+#' @param uuid
+#' @return Collection object.
+#' @name collections.used_by
+NULL
+
+#' collections.trash
+#'
+#' collections.trash is a method defined in Arvados class.
+#'
+#' @usage arv$collections.trash(uuid)
+#' @param uuid
+#' @return Collection object.
+#' @name collections.trash
+NULL
+
+#' collections.untrash
+#'
+#' collections.untrash is a method defined in Arvados class.
+#'
+#' @usage arv$collections.untrash(uuid)
+#' @param uuid
+#' @return Collection object.
+#' @name collections.untrash
+NULL
+
+#' collections.list
+#'
+#' collections.list is a method defined in Arvados class.
+#'
+#' @usage arv$collections.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact", include_trash = NULL)
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @param include_trash Include collections whose is_trashed attribute is true.
+#' @return CollectionList object.
+#' @name collections.list
+NULL
+
+#' humans.get
+#'
+#' humans.get is a method defined in Arvados class.
+#'
+#' @usage arv$humans.get(uuid)
+#' @param uuid The UUID of the Human in question.
+#' @return Human object.
+#' @name humans.get
+NULL
+
+#' humans.create
+#'
+#' humans.create is a method defined in Arvados class.
+#'
+#' @usage arv$humans.create(human, ensure_unique_name = "false")
+#' @param human Human object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Human object.
+#' @name humans.create
+NULL
+
+#' humans.update
+#'
+#' humans.update is a method defined in Arvados class.
+#'
+#' @usage arv$humans.update(human, uuid)
+#' @param human Human object.
+#' @param uuid The UUID of the Human in question.
+#' @return Human object.
+#' @name humans.update
+NULL
+
+#' humans.delete
+#'
+#' humans.delete is a method defined in Arvados class.
+#'
+#' @usage arv$humans.delete(uuid)
+#' @param uuid The UUID of the Human in question.
+#' @return Human object.
+#' @name humans.delete
+NULL
+
+#' humans.list
+#'
+#' humans.list is a method defined in Arvados class.
+#'
+#' @usage arv$humans.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return HumanList object.
+#' @name humans.list
+NULL
+
+#' job_tasks.get
+#'
+#' job_tasks.get is a method defined in Arvados class.
+#'
+#' @usage arv$job_tasks.get(uuid)
+#' @param uuid The UUID of the JobTask in question.
+#' @return JobTask object.
+#' @name job_tasks.get
+NULL
+
+#' job_tasks.create
+#'
+#' job_tasks.create is a method defined in Arvados class.
+#'
+#' @usage arv$job_tasks.create(jobtask, ensure_unique_name = "false")
+#' @param jobTask JobTask object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return JobTask object.
+#' @name job_tasks.create
+NULL
+
+#' job_tasks.update
+#'
+#' job_tasks.update is a method defined in Arvados class.
+#'
+#' @usage arv$job_tasks.update(jobtask, uuid)
+#' @param jobTask JobTask object.
+#' @param uuid The UUID of the JobTask in question.
+#' @return JobTask object.
+#' @name job_tasks.update
+NULL
+
+#' job_tasks.delete
+#'
+#' job_tasks.delete is a method defined in Arvados class.
+#'
+#' @usage arv$job_tasks.delete(uuid)
+#' @param uuid The UUID of the JobTask in question.
+#' @return JobTask object.
+#' @name job_tasks.delete
+NULL
+
+#' job_tasks.list
+#'
+#' job_tasks.list is a method defined in Arvados class.
+#'
+#' @usage arv$job_tasks.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return JobTaskList object.
+#' @name job_tasks.list
+NULL
+
+#' jobs.get
+#'
+#' jobs.get is a method defined in Arvados class.
+#'
+#' @usage arv$jobs.get(uuid)
+#' @param uuid The UUID of the Job in question.
+#' @return Job object.
+#' @name jobs.get
+NULL
+
+#' jobs.create
+#'
+#' jobs.create is a method defined in Arvados class.
+#'
+#' @usage arv$jobs.create(job, ensure_unique_name = "false",
+#' find_or_create = "false", filters = NULL,
+#' minimum_script_version = NULL, exclude_script_versions = NULL)
+#' @param job Job object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @param find_or_create
+#' @param filters
+#' @param minimum_script_version
+#' @param exclude_script_versions
+#' @return Job object.
+#' @name jobs.create
+NULL
+
+#' jobs.update
+#'
+#' jobs.update is a method defined in Arvados class.
+#'
+#' @usage arv$jobs.update(job, uuid)
+#' @param job Job object.
+#' @param uuid The UUID of the Job in question.
+#' @return Job object.
+#' @name jobs.update
+NULL
+
+#' jobs.delete
+#'
+#' jobs.delete is a method defined in Arvados class.
+#'
+#' @usage arv$jobs.delete(uuid)
+#' @param uuid The UUID of the Job in question.
+#' @return Job object.
+#' @name jobs.delete
+NULL
+
+#' jobs.queue
+#'
+#' jobs.queue is a method defined in Arvados class.
+#'
+#' @usage arv$jobs.queue(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return Job object.
+#' @name jobs.queue
+NULL
+
+#' jobs.queue_size
+#'
+#' jobs.queue_size is a method defined in Arvados class.
+#'
+#' @usage arv$jobs.queue_size(NULL)
+#' @return Job object.
+#' @name jobs.queue_size
+NULL
+
+#' jobs.cancel
+#'
+#' jobs.cancel is a method defined in Arvados class.
+#'
+#' @usage arv$jobs.cancel(uuid)
+#' @param uuid
+#' @return Job object.
+#' @name jobs.cancel
+NULL
+
+#' jobs.lock
+#'
+#' jobs.lock is a method defined in Arvados class.
+#'
+#' @usage arv$jobs.lock(uuid)
+#' @param uuid
+#' @return Job object.
+#' @name jobs.lock
+NULL
+
+#' jobs.list
+#'
+#' jobs.list is a method defined in Arvados class.
+#'
+#' @usage arv$jobs.list(filters = NULL, where = NULL,
+#' order = NULL, select = NULL, distinct = NULL,
+#' limit = "100", offset = "0", count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return JobList object.
+#' @name jobs.list
+NULL
+
+#' keep_disks.get
+#'
+#' keep_disks.get is a method defined in Arvados class.
+#'
+#' @usage arv$keep_disks.get(uuid)
+#' @param uuid The UUID of the KeepDisk in question.
+#' @return KeepDisk object.
+#' @name keep_disks.get
+NULL
+
+#' keep_disks.create
+#'
+#' keep_disks.create is a method defined in Arvados class.
+#'
+#' @usage arv$keep_disks.create(keepdisk,
+#' ensure_unique_name = "false")
+#' @param keepDisk KeepDisk object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return KeepDisk object.
+#' @name keep_disks.create
+NULL
+
+#' keep_disks.update
+#'
+#' keep_disks.update is a method defined in Arvados class.
+#'
+#' @usage arv$keep_disks.update(keepdisk,
+#' uuid)
+#' @param keepDisk KeepDisk object.
+#' @param uuid The UUID of the KeepDisk in question.
+#' @return KeepDisk object.
+#' @name keep_disks.update
+NULL
+
+#' keep_disks.delete
+#'
+#' keep_disks.delete is a method defined in Arvados class.
+#'
+#' @usage arv$keep_disks.delete(uuid)
+#' @param uuid The UUID of the KeepDisk in question.
+#' @return KeepDisk object.
+#' @name keep_disks.delete
+NULL
+
+#' keep_disks.ping
+#'
+#' keep_disks.ping is a method defined in Arvados class.
+#'
+#' @usage arv$keep_disks.ping(uuid = NULL,
+#' ping_secret, node_uuid = NULL, filesystem_uuid = NULL,
+#' service_host = NULL, service_port, service_ssl_flag)
+#' @param uuid
+#' @param ping_secret
+#' @param node_uuid
+#' @param filesystem_uuid
+#' @param service_host
+#' @param service_port
+#' @param service_ssl_flag
+#' @return KeepDisk object.
+#' @name keep_disks.ping
+NULL
+
+#' keep_disks.list
+#'
+#' keep_disks.list is a method defined in Arvados class.
+#'
+#' @usage arv$keep_disks.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return KeepDiskList object.
+#' @name keep_disks.list
+NULL
+
+#' nodes.get
+#'
+#' nodes.get is a method defined in Arvados class.
+#'
+#' @usage arv$nodes.get(uuid)
+#' @param uuid The UUID of the Node in question.
+#' @return Node object.
+#' @name nodes.get
+NULL
+
+#' nodes.create
+#'
+#' nodes.create is a method defined in Arvados class.
+#'
+#' @usage arv$nodes.create(node, ensure_unique_name = "false",
+#' assign_slot = NULL)
+#' @param node Node object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @param assign_slot assign slot and hostname
+#' @return Node object.
+#' @name nodes.create
+NULL
+
+#' nodes.update
+#'
+#' nodes.update is a method defined in Arvados class.
+#'
+#' @usage arv$nodes.update(node, uuid, assign_slot = NULL)
+#' @param node Node object.
+#' @param uuid The UUID of the Node in question.
+#' @param assign_slot assign slot and hostname
+#' @return Node object.
+#' @name nodes.update
+NULL
+
+#' nodes.delete
+#'
+#' nodes.delete is a method defined in Arvados class.
+#'
+#' @usage arv$nodes.delete(uuid)
+#' @param uuid The UUID of the Node in question.
+#' @return Node object.
+#' @name nodes.delete
+NULL
+
+#' nodes.ping
+#'
+#' nodes.ping is a method defined in Arvados class.
+#'
+#' @usage arv$nodes.ping(uuid, ping_secret)
+#' @param uuid
+#' @param ping_secret
+#' @return Node object.
+#' @name nodes.ping
+NULL
+
+#' nodes.list
+#'
+#' nodes.list is a method defined in Arvados class.
+#'
+#' @usage arv$nodes.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return NodeList object.
+#' @name nodes.list
+NULL
+
+#' links.get
+#'
+#' links.get is a method defined in Arvados class.
+#'
+#' @usage arv$links.get(uuid)
+#' @param uuid The UUID of the Link in question.
+#' @return Link object.
+#' @name links.get
+NULL
+
+#' links.create
+#'
+#' links.create is a method defined in Arvados class.
+#'
+#' @usage arv$links.create(link, ensure_unique_name = "false")
+#' @param link Link object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Link object.
+#' @name links.create
+NULL
+
+#' links.update
+#'
+#' links.update is a method defined in Arvados class.
+#'
+#' @usage arv$links.update(link, uuid)
+#' @param link Link object.
+#' @param uuid The UUID of the Link in question.
+#' @return Link object.
+#' @name links.update
+NULL
+
+#' links.delete
+#'
+#' links.delete is a method defined in Arvados class.
+#'
+#' @usage arv$links.delete(uuid)
+#' @param uuid The UUID of the Link in question.
+#' @return Link object.
+#' @name links.delete
+NULL
+
+#' links.list
+#'
+#' links.list is a method defined in Arvados class.
+#'
+#' @usage arv$links.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return LinkList object.
+#' @name links.list
+NULL
+
+#' links.get_permissions
+#'
+#' links.get_permissions is a method defined in Arvados class.
+#'
+#' @usage arv$links.get_permissions(uuid)
+#' @param uuid
+#' @return Link object.
+#' @name links.get_permissions
+NULL
+
+#' keep_services.get
+#'
+#' keep_services.get is a method defined in Arvados class.
+#'
+#' @usage arv$keep_services.get(uuid)
+#' @param uuid The UUID of the KeepService in question.
+#' @return KeepService object.
+#' @name keep_services.get
+NULL
+
+#' keep_services.create
+#'
+#' keep_services.create is a method defined in Arvados class.
+#'
+#' @usage arv$keep_services.create(keepservice,
+#' ensure_unique_name = "false")
+#' @param keepService KeepService object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return KeepService object.
+#' @name keep_services.create
+NULL
+
+#' keep_services.update
+#'
+#' keep_services.update is a method defined in Arvados class.
+#'
+#' @usage arv$keep_services.update(keepservice,
+#' uuid)
+#' @param keepService KeepService object.
+#' @param uuid The UUID of the KeepService in question.
+#' @return KeepService object.
+#' @name keep_services.update
+NULL
+
+#' keep_services.delete
+#'
+#' keep_services.delete is a method defined in Arvados class.
+#'
+#' @usage arv$keep_services.delete(uuid)
+#' @param uuid The UUID of the KeepService in question.
+#' @return KeepService object.
+#' @name keep_services.delete
+NULL
+
+#' keep_services.accessible
+#'
+#' keep_services.accessible is a method defined in Arvados class.
+#'
+#' @usage arv$keep_services.accessible(NULL)
+#' @return KeepService object.
+#' @name keep_services.accessible
+NULL
+
+#' keep_services.list
+#'
+#' keep_services.list is a method defined in Arvados class.
+#'
+#' @usage arv$keep_services.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return KeepServiceList object.
+#' @name keep_services.list
+NULL
+
+#' pipeline_templates.get
+#'
+#' pipeline_templates.get is a method defined in Arvados class.
+#'
+#' @usage arv$pipeline_templates.get(uuid)
+#' @param uuid The UUID of the PipelineTemplate in question.
+#' @return PipelineTemplate object.
+#' @name pipeline_templates.get
+NULL
+
+#' pipeline_templates.create
+#'
+#' pipeline_templates.create is a method defined in Arvados class.
+#'
+#' @usage arv$pipeline_templates.create(pipelinetemplate,
+#' ensure_unique_name = "false")
+#' @param pipelineTemplate PipelineTemplate object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return PipelineTemplate object.
+#' @name pipeline_templates.create
+NULL
+
+#' pipeline_templates.update
+#'
+#' pipeline_templates.update is a method defined in Arvados class.
+#'
+#' @usage arv$pipeline_templates.update(pipelinetemplate,
+#' uuid)
+#' @param pipelineTemplate PipelineTemplate object.
+#' @param uuid The UUID of the PipelineTemplate in question.
+#' @return PipelineTemplate object.
+#' @name pipeline_templates.update
+NULL
+
+#' pipeline_templates.delete
+#'
+#' pipeline_templates.delete is a method defined in Arvados class.
+#'
+#' @usage arv$pipeline_templates.delete(uuid)
+#' @param uuid The UUID of the PipelineTemplate in question.
+#' @return PipelineTemplate object.
+#' @name pipeline_templates.delete
+NULL
+
+#' pipeline_templates.list
+#'
+#' pipeline_templates.list is a method defined in Arvados class.
+#'
+#' @usage arv$pipeline_templates.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return PipelineTemplateList object.
+#' @name pipeline_templates.list
+NULL
+
+#' pipeline_instances.get
+#'
+#' pipeline_instances.get is a method defined in Arvados class.
+#'
+#' @usage arv$pipeline_instances.get(uuid)
+#' @param uuid The UUID of the PipelineInstance in question.
+#' @return PipelineInstance object.
+#' @name pipeline_instances.get
+NULL
+
+#' pipeline_instances.create
+#'
+#' pipeline_instances.create is a method defined in Arvados class.
+#'
+#' @usage arv$pipeline_instances.create(pipelineinstance,
+#' ensure_unique_name = "false")
+#' @param pipelineInstance PipelineInstance object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return PipelineInstance object.
+#' @name pipeline_instances.create
+NULL
+
+#' pipeline_instances.update
+#'
+#' pipeline_instances.update is a method defined in Arvados class.
+#'
+#' @usage arv$pipeline_instances.update(pipelineinstance,
+#' uuid)
+#' @param pipelineInstance PipelineInstance object.
+#' @param uuid The UUID of the PipelineInstance in question.
+#' @return PipelineInstance object.
+#' @name pipeline_instances.update
+NULL
+
+#' pipeline_instances.delete
+#'
+#' pipeline_instances.delete is a method defined in Arvados class.
+#'
+#' @usage arv$pipeline_instances.delete(uuid)
+#' @param uuid The UUID of the PipelineInstance in question.
+#' @return PipelineInstance object.
+#' @name pipeline_instances.delete
+NULL
+
+#' pipeline_instances.cancel
+#'
+#' pipeline_instances.cancel is a method defined in Arvados class.
+#'
+#' @usage arv$pipeline_instances.cancel(uuid)
+#' @param uuid
+#' @return PipelineInstance object.
+#' @name pipeline_instances.cancel
+NULL
+
+#' pipeline_instances.list
+#'
+#' pipeline_instances.list is a method defined in Arvados class.
+#'
+#' @usage arv$pipeline_instances.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return PipelineInstanceList object.
+#' @name pipeline_instances.list
+NULL
+
+#' repositories.get
+#'
+#' repositories.get is a method defined in Arvados class.
+#'
+#' @usage arv$repositories.get(uuid)
+#' @param uuid The UUID of the Repository in question.
+#' @return Repository object.
+#' @name repositories.get
+NULL
+
+#' repositories.create
+#'
+#' repositories.create is a method defined in Arvados class.
+#'
+#' @usage arv$repositories.create(repository,
+#' ensure_unique_name = "false")
+#' @param repository Repository object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Repository object.
+#' @name repositories.create
+NULL
+
+#' repositories.update
+#'
+#' repositories.update is a method defined in Arvados class.
+#'
+#' @usage arv$repositories.update(repository,
+#' uuid)
+#' @param repository Repository object.
+#' @param uuid The UUID of the Repository in question.
+#' @return Repository object.
+#' @name repositories.update
+NULL
+
+#' repositories.delete
+#'
+#' repositories.delete is a method defined in Arvados class.
+#'
+#' @usage arv$repositories.delete(uuid)
+#' @param uuid The UUID of the Repository in question.
+#' @return Repository object.
+#' @name repositories.delete
+NULL
+
+#' repositories.get_all_permissions
+#'
+#' repositories.get_all_permissions is a method defined in Arvados class.
+#'
+#' @usage arv$repositories.get_all_permissions(NULL)
+#' @return Repository object.
+#' @name repositories.get_all_permissions
+NULL
+
+#' repositories.list
+#'
+#' repositories.list is a method defined in Arvados class.
+#'
+#' @usage arv$repositories.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return RepositoryList object.
+#' @name repositories.list
+NULL
+
+#' specimens.get
+#'
+#' specimens.get is a method defined in Arvados class.
+#'
+#' @usage arv$specimens.get(uuid)
+#' @param uuid The UUID of the Specimen in question.
+#' @return Specimen object.
+#' @name specimens.get
+NULL
+
+#' specimens.create
+#'
+#' specimens.create is a method defined in Arvados class.
+#'
+#' @usage arv$specimens.create(specimen,
+#' ensure_unique_name = "false")
+#' @param specimen Specimen object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Specimen object.
+#' @name specimens.create
+NULL
+
+#' specimens.update
+#'
+#' specimens.update is a method defined in Arvados class.
+#'
+#' @usage arv$specimens.update(specimen,
+#' uuid)
+#' @param specimen Specimen object.
+#' @param uuid The UUID of the Specimen in question.
+#' @return Specimen object.
+#' @name specimens.update
+NULL
+
+#' specimens.delete
+#'
+#' specimens.delete is a method defined in Arvados class.
+#'
+#' @usage arv$specimens.delete(uuid)
+#' @param uuid The UUID of the Specimen in question.
+#' @return Specimen object.
+#' @name specimens.delete
+NULL
+
+#' specimens.list
+#'
+#' specimens.list is a method defined in Arvados class.
+#'
+#' @usage arv$specimens.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return SpecimenList object.
+#' @name specimens.list
+NULL
+
+#' logs.get
+#'
+#' logs.get is a method defined in Arvados class.
+#'
+#' @usage arv$logs.get(uuid)
+#' @param uuid The UUID of the Log in question.
+#' @return Log object.
+#' @name logs.get
+NULL
+
+#' logs.create
+#'
+#' logs.create is a method defined in Arvados class.
+#'
+#' @usage arv$logs.create(log, ensure_unique_name = "false")
+#' @param log Log object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Log object.
+#' @name logs.create
+NULL
+
+#' logs.update
+#'
+#' logs.update is a method defined in Arvados class.
+#'
+#' @usage arv$logs.update(log, uuid)
+#' @param log Log object.
+#' @param uuid The UUID of the Log in question.
+#' @return Log object.
+#' @name logs.update
+NULL
+
+#' logs.delete
+#'
+#' logs.delete is a method defined in Arvados class.
+#'
+#' @usage arv$logs.delete(uuid)
+#' @param uuid The UUID of the Log in question.
+#' @return Log object.
+#' @name logs.delete
+NULL
+
+#' logs.list
+#'
+#' logs.list is a method defined in Arvados class.
+#'
+#' @usage arv$logs.list(filters = NULL, where = NULL,
+#' order = NULL, select = NULL, distinct = NULL,
+#' limit = "100", offset = "0", count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return LogList object.
+#' @name logs.list
+NULL
+
+#' traits.get
+#'
+#' traits.get is a method defined in Arvados class.
+#'
+#' @usage arv$traits.get(uuid)
+#' @param uuid The UUID of the Trait in question.
+#' @return Trait object.
+#' @name traits.get
+NULL
+
+#' traits.create
+#'
+#' traits.create is a method defined in Arvados class.
+#'
+#' @usage arv$traits.create(trait, ensure_unique_name = "false")
+#' @param trait Trait object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Trait object.
+#' @name traits.create
+NULL
+
+#' traits.update
+#'
+#' traits.update is a method defined in Arvados class.
+#'
+#' @usage arv$traits.update(trait, uuid)
+#' @param trait Trait object.
+#' @param uuid The UUID of the Trait in question.
+#' @return Trait object.
+#' @name traits.update
+NULL
+
+#' traits.delete
+#'
+#' traits.delete is a method defined in Arvados class.
+#'
+#' @usage arv$traits.delete(uuid)
+#' @param uuid The UUID of the Trait in question.
+#' @return Trait object.
+#' @name traits.delete
+NULL
+
+#' traits.list
+#'
+#' traits.list is a method defined in Arvados class.
+#'
+#' @usage arv$traits.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return TraitList object.
+#' @name traits.list
+NULL
+
+#' virtual_machines.get
+#'
+#' virtual_machines.get is a method defined in Arvados class.
+#'
+#' @usage arv$virtual_machines.get(uuid)
+#' @param uuid The UUID of the VirtualMachine in question.
+#' @return VirtualMachine object.
+#' @name virtual_machines.get
+NULL
+
+#' virtual_machines.create
+#'
+#' virtual_machines.create is a method defined in Arvados class.
+#'
+#' @usage arv$virtual_machines.create(virtualmachine,
+#' ensure_unique_name = "false")
+#' @param virtualMachine VirtualMachine object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return VirtualMachine object.
+#' @name virtual_machines.create
+NULL
+
+#' virtual_machines.update
+#'
+#' virtual_machines.update is a method defined in Arvados class.
+#'
+#' @usage arv$virtual_machines.update(virtualmachine,
+#' uuid)
+#' @param virtualMachine VirtualMachine object.
+#' @param uuid The UUID of the VirtualMachine in question.
+#' @return VirtualMachine object.
+#' @name virtual_machines.update
+NULL
+
+#' virtual_machines.delete
+#'
+#' virtual_machines.delete is a method defined in Arvados class.
+#'
+#' @usage arv$virtual_machines.delete(uuid)
+#' @param uuid The UUID of the VirtualMachine in question.
+#' @return VirtualMachine object.
+#' @name virtual_machines.delete
+NULL
+
+#' virtual_machines.logins
+#'
+#' virtual_machines.logins is a method defined in Arvados class.
+#'
+#' @usage arv$virtual_machines.logins(uuid)
+#' @param uuid
+#' @return VirtualMachine object.
+#' @name virtual_machines.logins
+NULL
+
+#' virtual_machines.get_all_logins
+#'
+#' virtual_machines.get_all_logins is a method defined in Arvados class.
+#'
+#' @usage arv$virtual_machines.get_all_logins(NULL)
+#' @return VirtualMachine object.
+#' @name virtual_machines.get_all_logins
+NULL
+
+#' virtual_machines.list
+#'
+#' virtual_machines.list is a method defined in Arvados class.
+#'
+#' @usage arv$virtual_machines.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return VirtualMachineList object.
+#' @name virtual_machines.list
+NULL
+
+#' workflows.get
+#'
+#' workflows.get is a method defined in Arvados class.
+#'
+#' @usage arv$workflows.get(uuid)
+#' @param uuid The UUID of the Workflow in question.
+#' @return Workflow object.
+#' @name workflows.get
+NULL
+
+#' workflows.create
+#'
+#' workflows.create is a method defined in Arvados class.
+#'
+#' @usage arv$workflows.create(workflow,
+#' ensure_unique_name = "false")
+#' @param workflow Workflow object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Workflow object.
+#' @name workflows.create
+NULL
+
+#' workflows.update
+#'
+#' workflows.update is a method defined in Arvados class.
+#'
+#' @usage arv$workflows.update(workflow,
+#' uuid)
+#' @param workflow Workflow object.
+#' @param uuid The UUID of the Workflow in question.
+#' @return Workflow object.
+#' @name workflows.update
+NULL
+
+#' workflows.delete
+#'
+#' workflows.delete is a method defined in Arvados class.
+#'
+#' @usage arv$workflows.delete(uuid)
+#' @param uuid The UUID of the Workflow in question.
+#' @return Workflow object.
+#' @name workflows.delete
+NULL
+
+#' workflows.list
+#'
+#' workflows.list is a method defined in Arvados class.
+#'
+#' @usage arv$workflows.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return WorkflowList object.
+#' @name workflows.list
+NULL
+
+#' groups.get
+#'
+#' groups.get is a method defined in Arvados class.
+#'
+#' @usage arv$groups.get(uuid)
+#' @param uuid The UUID of the Group in question.
+#' @return Group object.
+#' @name groups.get
+NULL
+
+#' groups.create
+#'
+#' groups.create is a method defined in Arvados class.
+#'
+#' @usage arv$groups.create(group, ensure_unique_name = "false")
+#' @param group Group object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Group object.
+#' @name groups.create
+NULL
+
+#' groups.update
+#'
+#' groups.update is a method defined in Arvados class.
+#'
+#' @usage arv$groups.update(group, uuid)
+#' @param group Group object.
+#' @param uuid The UUID of the Group in question.
+#' @return Group object.
+#' @name groups.update
+NULL
+
+#' groups.delete
+#'
+#' groups.delete is a method defined in Arvados class.
+#'
+#' @usage arv$groups.delete(uuid)
+#' @param uuid The UUID of the Group in question.
+#' @return Group object.
+#' @name groups.delete
+NULL
+
+#' groups.contents
+#'
+#' groups.contents is a method defined in Arvados class.
+#'
+#' @usage arv$groups.contents(filters = NULL,
+#' where = NULL, order = NULL, distinct = NULL,
+#' limit = "100", offset = "0", count = "exact",
+#' include_trash = NULL, uuid = NULL, recursive = NULL)
+#' @param filters
+#' @param where
+#' @param order
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @param include_trash Include items whose is_trashed attribute is true.
+#' @param uuid
+#' @param recursive Include contents from child groups recursively.
+#' @return Group object.
+#' @name groups.contents
+NULL
+
+#' groups.trash
+#'
+#' groups.trash is a method defined in Arvados class.
+#'
+#' @usage arv$groups.trash(uuid)
+#' @param uuid
+#' @return Group object.
+#' @name groups.trash
+NULL
+
+#' groups.untrash
+#'
+#' groups.untrash is a method defined in Arvados class.
+#'
+#' @usage arv$groups.untrash(uuid)
+#' @param uuid
+#' @return Group object.
+#' @name groups.untrash
+NULL
+
+#' groups.list
+#'
+#' groups.list is a method defined in Arvados class.
+#'
+#' @usage arv$groups.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact", include_trash = NULL)
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @param include_trash Include items whose is_trashed attribute is true.
+#' @return GroupList object.
+#' @name groups.list
+NULL
+
+#' user_agreements.get
+#'
+#' user_agreements.get is a method defined in Arvados class.
+#'
+#' @usage arv$user_agreements.get(uuid)
+#' @param uuid The UUID of the UserAgreement in question.
+#' @return UserAgreement object.
+#' @name user_agreements.get
+NULL
+
+#' user_agreements.create
+#'
+#' user_agreements.create is a method defined in Arvados class.
+#'
+#' @usage arv$user_agreements.create(useragreement,
+#' ensure_unique_name = "false")
+#' @param userAgreement UserAgreement object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return UserAgreement object.
+#' @name user_agreements.create
+NULL
+
+#' user_agreements.update
+#'
+#' user_agreements.update is a method defined in Arvados class.
+#'
+#' @usage arv$user_agreements.update(useragreement,
+#' uuid)
+#' @param userAgreement UserAgreement object.
+#' @param uuid The UUID of the UserAgreement in question.
+#' @return UserAgreement object.
+#' @name user_agreements.update
+NULL
+
+#' user_agreements.delete
+#'
+#' user_agreements.delete is a method defined in Arvados class.
+#'
+#' @usage arv$user_agreements.delete(uuid)
+#' @param uuid The UUID of the UserAgreement in question.
+#' @return UserAgreement object.
+#' @name user_agreements.delete
+NULL
+
+#' user_agreements.signatures
+#'
+#' user_agreements.signatures is a method defined in Arvados class.
+#'
+#' @usage arv$user_agreements.signatures(NULL)
+#' @return UserAgreement object.
+#' @name user_agreements.signatures
+NULL
+
+#' user_agreements.sign
+#'
+#' user_agreements.sign is a method defined in Arvados class.
+#'
+#' @usage arv$user_agreements.sign(NULL)
+#' @return UserAgreement object.
+#' @name user_agreements.sign
+NULL
+
+#' user_agreements.list
+#'
+#' user_agreements.list is a method defined in Arvados class.
+#'
+#' @usage arv$user_agreements.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return UserAgreementList object.
+#' @name user_agreements.list
+NULL
+
+#' user_agreements.new
+#'
+#' user_agreements.new is a method defined in Arvados class.
+#'
+#' @usage arv$user_agreements.new(NULL)
+#' @return UserAgreement object.
+#' @name user_agreements.new
+NULL
+
+#' project.get
+#'
+#' projects.get is equivalent to groups.get method.
+#'
+#' @usage arv$projects.get(uuid)
+#' @param uuid The UUID of the Group in question.
+#' @return Group object.
+#' @name projects.get
+NULL
+
+#' project.create
+#'
+#' projects.create wrapps groups.create method by setting group_class attribute to "project".
+#'
+#' @usage arv$projects.create(group, ensure_unique_name = "false")
+#' @param group Group object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Group object.
+#' @name projects.create
+NULL
+
+#' project.update
+#'
+#' projects.update wrapps groups.update method by setting group_class attribute to "project".
+#'
+#' @usage arv$projects.update(group, uuid)
+#' @param group Group object.
+#' @param uuid The UUID of the Group in question.
+#' @return Group object.
+#' @name projects.update
+NULL
+
+#' project.delete
+#'
+#' projects.delete is equivalent to groups.delete method.
+#'
+#' @usage arv$project.delete(uuid)
+#' @param uuid The UUID of the Group in question.
+#' @return Group object.
+#' @name projects.delete
+NULL
+
+#' project.list
+#'
+#' projects.list wrapps groups.list method by setting group_class attribute to "project".
+#'
+#' @usage arv$projects.list(filters = NULL,
+#' where = NULL, order = NULL, distinct = NULL,
+#' limit = "100", offset = "0", count = "exact",
+#' include_trash = NULL, uuid = NULL, recursive = NULL)
+#' @param filters
+#' @param where
+#' @param order
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @param include_trash Include items whose is_trashed attribute is true.
+#' @param uuid
+#' @param recursive Include contents from child groups recursively.
+#' @return Group object.
+#' @name projects.list
+NULL
+
+#' Arvados
+#'
+#' Arvados class gives users ability to access Arvados REST API.
+#'
+#' @section Usage:
+#' \preformatted{arv = Arvados$new(authToken = NULL, hostName = NULL, numRetries = 0)}
#'
-#' All Arvados logic is inside this class
+#' @section Arguments:
+#' \describe{
+#' \item{authToken}{Authentification token. If not specified ARVADOS_API_TOKEN environment variable will be used.}
+#' \item{hostName}{Host name. If not specified ARVADOS_API_HOST environment variable will be used.}
+#' \item{numRetries}{Number which specifies how many times to retry failed service requests.}
+#' }
#'
-#' @field token Token represents user authentification token.
-#' @field host Host represents server name we wish to connect to.
-#' @examples arv = Arvados("token", "host_name")
-#' @export Arvados
-Arvados <- setRefClass(
+#' @section Methods:
+#' \describe{
+#' \item{}{\code{\link{api_client_authorizations.create}}}
+#' \item{}{\code{\link{api_client_authorizations.create_system_auth}}}
+#' \item{}{\code{\link{api_client_authorizations.current}}}
+#' \item{}{\code{\link{api_client_authorizations.delete}}}
+#' \item{}{\code{\link{api_client_authorizations.get}}}
+#' \item{}{\code{\link{api_client_authorizations.list}}}
+#' \item{}{\code{\link{api_client_authorizations.update}}}
+#' \item{}{\code{\link{api_clients.create}}}
+#' \item{}{\code{\link{api_clients.delete}}}
+#' \item{}{\code{\link{api_clients.get}}}
+#' \item{}{\code{\link{api_clients.list}}}
+#' \item{}{\code{\link{api_clients.update}}}
+#' \item{}{\code{\link{authorized_keys.create}}}
+#' \item{}{\code{\link{authorized_keys.delete}}}
+#' \item{}{\code{\link{authorized_keys.get}}}
+#' \item{}{\code{\link{authorized_keys.list}}}
+#' \item{}{\code{\link{authorized_keys.update}}}
+#' \item{}{\code{\link{collections.create}}}
+#' \item{}{\code{\link{collections.delete}}}
+#' \item{}{\code{\link{collections.get}}}
+#' \item{}{\code{\link{collections.list}}}
+#' \item{}{\code{\link{collections.provenance}}}
+#' \item{}{\code{\link{collections.trash}}}
+#' \item{}{\code{\link{collections.untrash}}}
+#' \item{}{\code{\link{collections.update}}}
+#' \item{}{\code{\link{collections.used_by}}}
+#' \item{}{\code{\link{container_requests.create}}}
+#' \item{}{\code{\link{container_requests.delete}}}
+#' \item{}{\code{\link{container_requests.get}}}
+#' \item{}{\code{\link{container_requests.list}}}
+#' \item{}{\code{\link{container_requests.update}}}
+#' \item{}{\code{\link{containers.auth}}}
+#' \item{}{\code{\link{containers.create}}}
+#' \item{}{\code{\link{containers.current}}}
+#' \item{}{\code{\link{containers.delete}}}
+#' \item{}{\code{\link{containers.get}}}
+#' \item{}{\code{\link{containers.list}}}
+#' \item{}{\code{\link{containers.lock}}}
+#' \item{}{\code{\link{containers.secret_mounts}}}
+#' \item{}{\code{\link{containers.unlock}}}
+#' \item{}{\code{\link{containers.update}}}
+#' \item{}{\code{\link{groups.contents}}}
+#' \item{}{\code{\link{groups.create}}}
+#' \item{}{\code{\link{groups.delete}}}
+#' \item{}{\code{\link{groups.get}}}
+#' \item{}{\code{\link{groups.list}}}
+#' \item{}{\code{\link{groups.trash}}}
+#' \item{}{\code{\link{groups.untrash}}}
+#' \item{}{\code{\link{groups.update}}}
+#' \item{}{\code{\link{humans.create}}}
+#' \item{}{\code{\link{humans.delete}}}
+#' \item{}{\code{\link{humans.get}}}
+#' \item{}{\code{\link{humans.list}}}
+#' \item{}{\code{\link{humans.update}}}
+#' \item{}{\code{\link{jobs.cancel}}}
+#' \item{}{\code{\link{jobs.create}}}
+#' \item{}{\code{\link{jobs.delete}}}
+#' \item{}{\code{\link{jobs.get}}}
+#' \item{}{\code{\link{jobs.list}}}
+#' \item{}{\code{\link{jobs.lock}}}
+#' \item{}{\code{\link{jobs.queue}}}
+#' \item{}{\code{\link{jobs.queue_size}}}
+#' \item{}{\code{\link{jobs.update}}}
+#' \item{}{\code{\link{job_tasks.create}}}
+#' \item{}{\code{\link{job_tasks.delete}}}
+#' \item{}{\code{\link{job_tasks.get}}}
+#' \item{}{\code{\link{job_tasks.list}}}
+#' \item{}{\code{\link{job_tasks.update}}}
+#' \item{}{\code{\link{keep_disks.create}}}
+#' \item{}{\code{\link{keep_disks.delete}}}
+#' \item{}{\code{\link{keep_disks.get}}}
+#' \item{}{\code{\link{keep_disks.list}}}
+#' \item{}{\code{\link{keep_disks.ping}}}
+#' \item{}{\code{\link{keep_disks.update}}}
+#' \item{}{\code{\link{keep_services.accessible}}}
+#' \item{}{\code{\link{keep_services.create}}}
+#' \item{}{\code{\link{keep_services.delete}}}
+#' \item{}{\code{\link{keep_services.get}}}
+#' \item{}{\code{\link{keep_services.list}}}
+#' \item{}{\code{\link{keep_services.update}}}
+#' \item{}{\code{\link{links.create}}}
+#' \item{}{\code{\link{links.delete}}}
+#' \item{}{\code{\link{links.get}}}
+#' \item{}{\code{\link{links.get_permissions}}}
+#' \item{}{\code{\link{links.list}}}
+#' \item{}{\code{\link{links.update}}}
+#' \item{}{\code{\link{logs.create}}}
+#' \item{}{\code{\link{logs.delete}}}
+#' \item{}{\code{\link{logs.get}}}
+#' \item{}{\code{\link{logs.list}}}
+#' \item{}{\code{\link{logs.update}}}
+#' \item{}{\code{\link{nodes.create}}}
+#' \item{}{\code{\link{nodes.delete}}}
+#' \item{}{\code{\link{nodes.get}}}
+#' \item{}{\code{\link{nodes.list}}}
+#' \item{}{\code{\link{nodes.ping}}}
+#' \item{}{\code{\link{nodes.update}}}
+#' \item{}{\code{\link{pipeline_instances.cancel}}}
+#' \item{}{\code{\link{pipeline_instances.create}}}
+#' \item{}{\code{\link{pipeline_instances.delete}}}
+#' \item{}{\code{\link{pipeline_instances.get}}}
+#' \item{}{\code{\link{pipeline_instances.list}}}
+#' \item{}{\code{\link{pipeline_instances.update}}}
+#' \item{}{\code{\link{pipeline_templates.create}}}
+#' \item{}{\code{\link{pipeline_templates.delete}}}
+#' \item{}{\code{\link{pipeline_templates.get}}}
+#' \item{}{\code{\link{pipeline_templates.list}}}
+#' \item{}{\code{\link{pipeline_templates.update}}}
+#' \item{}{\code{\link{projects.create}}}
+#' \item{}{\code{\link{projects.delete}}}
+#' \item{}{\code{\link{projects.get}}}
+#' \item{}{\code{\link{projects.list}}}
+#' \item{}{\code{\link{projects.update}}}
+#' \item{}{\code{\link{repositories.create}}}
+#' \item{}{\code{\link{repositories.delete}}}
+#' \item{}{\code{\link{repositories.get}}}
+#' \item{}{\code{\link{repositories.get_all_permissions}}}
+#' \item{}{\code{\link{repositories.list}}}
+#' \item{}{\code{\link{repositories.update}}}
+#' \item{}{\code{\link{specimens.create}}}
+#' \item{}{\code{\link{specimens.delete}}}
+#' \item{}{\code{\link{specimens.get}}}
+#' \item{}{\code{\link{specimens.list}}}
+#' \item{}{\code{\link{specimens.update}}}
+#' \item{}{\code{\link{traits.create}}}
+#' \item{}{\code{\link{traits.delete}}}
+#' \item{}{\code{\link{traits.get}}}
+#' \item{}{\code{\link{traits.list}}}
+#' \item{}{\code{\link{traits.update}}}
+#' \item{}{\code{\link{user_agreements.create}}}
+#' \item{}{\code{\link{user_agreements.delete}}}
+#' \item{}{\code{\link{user_agreements.get}}}
+#' \item{}{\code{\link{user_agreements.list}}}
+#' \item{}{\code{\link{user_agreements.new}}}
+#' \item{}{\code{\link{user_agreements.sign}}}
+#' \item{}{\code{\link{user_agreements.signatures}}}
+#' \item{}{\code{\link{user_agreements.update}}}
+#' \item{}{\code{\link{users.activate}}}
+#' \item{}{\code{\link{users.create}}}
+#' \item{}{\code{\link{users.current}}}
+#' \item{}{\code{\link{users.delete}}}
+#' \item{}{\code{\link{users.get}}}
+#' \item{}{\code{\link{users.list}}}
+#' \item{}{\code{\link{users.merge}}}
+#' \item{}{\code{\link{users.setup}}}
+#' \item{}{\code{\link{users.system}}}
+#' \item{}{\code{\link{users.unsetup}}}
+#' \item{}{\code{\link{users.update}}}
+#' \item{}{\code{\link{users.update_uuid}}}
+#' \item{}{\code{\link{virtual_machines.create}}}
+#' \item{}{\code{\link{virtual_machines.delete}}}
+#' \item{}{\code{\link{virtual_machines.get}}}
+#' \item{}{\code{\link{virtual_machines.get_all_logins}}}
+#' \item{}{\code{\link{virtual_machines.list}}}
+#' \item{}{\code{\link{virtual_machines.logins}}}
+#' \item{}{\code{\link{virtual_machines.update}}}
+#' \item{}{\code{\link{workflows.create}}}
+#' \item{}{\code{\link{workflows.delete}}}
+#' \item{}{\code{\link{workflows.get}}}
+#' \item{}{\code{\link{workflows.list}}}
+#' \item{}{\code{\link{workflows.update}}}
+#' }
+#'
+#' @name Arvados
+#' @examples
+#' \dontrun{
+#' arv <- Arvados$new("your Arvados token", "example.arvadosapi.com")
+#'
+#' collection <- arv$collections.get("uuid")
+#'
+#' collectionList <- arv$collections.list(list(list("name", "like", "Test%")))
+#' collectionList <- listAll(arv$collections.list, list(list("name", "like", "Test%")))
+#'
+#' deletedCollection <- arv$collections.delete("uuid")
+#'
+#' updatedCollection <- arv$collections.update(list(name = "New name", description = "New description"),
+#' "uuid")
+#'
+#' createdCollection <- arv$collections.create(list(name = "Example",
+#' description = "This is a test collection"))
+#' }
+NULL
+
+#' @export
+Arvados <- R6::R6Class(
+
+ "Arvados",
+
+ public = list(
+
+ initialize = function(authToken = NULL, hostName = NULL, numRetries = 0)
+ {
+ if(!is.null(hostName))
+ Sys.setenv(ARVADOS_API_HOST = hostName)
+
+ if(!is.null(authToken))
+ Sys.setenv(ARVADOS_API_TOKEN = authToken)
+
+ hostName <- Sys.getenv("ARVADOS_API_HOST")
+ token <- Sys.getenv("ARVADOS_API_TOKEN")
+
+ if(hostName == "" | token == "")
+ stop(paste("Please provide host name and authentification token",
+ "or set ARVADOS_API_HOST and ARVADOS_API_TOKEN",
+ "environment variables."))
+
+ private$token <- token
+ private$host <- paste0("https://", hostName, "/arvados/v1/")
+ private$numRetries <- numRetries
+ private$REST <- RESTService$new(token, hostName,
+ HttpRequest$new(), HttpParser$new(),
+ numRetries)
+
+ },
+
+ projects.get = function(uuid)
+ {
+ self$groups.get(uuid)
+ },
+
+ projects.create = function(group, ensure_unique_name = "false")
+ {
+ group <- c("group_class" = "project", group)
+ self$groups.create(group, ensure_unique_name)
+ },
+
+ projects.update = function(group, uuid)
+ {
+ group <- c("group_class" = "project", group)
+ self$groups.update(group, uuid)
+ },
+
+ projects.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact",
+ include_trash = NULL)
+ {
+ filters[[length(filters) + 1]] <- list("group_class", "=", "project")
+ self$groups.list(filters, where, order, select, distinct,
+ limit, offset, count, include_trash)
+ },
+
+ projects.delete = function(uuid)
+ {
+ self$groups.delete(uuid)
+ },
+
+ users.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("users/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ users.create = function(user, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("users")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(user) > 0)
+ body <- jsonlite::toJSON(list(user = user),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ users.update = function(user, uuid)
+ {
+ endPoint <- stringr::str_interp("users/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(user) > 0)
+ body <- jsonlite::toJSON(list(user = user),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ users.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("users/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ users.current = function()
+ {
+ endPoint <- stringr::str_interp("users/current")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ users.system = function()
+ {
+ endPoint <- stringr::str_interp("users/system")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ users.activate = function(uuid)
+ {
+ endPoint <- stringr::str_interp("users/${uuid}/activate")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ users.setup = function(user = NULL, openid_prefix = NULL,
+ repo_name = NULL, vm_uuid = NULL, send_notification_email = "false")
+ {
+ endPoint <- stringr::str_interp("users/setup")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(user = user, openid_prefix = openid_prefix,
+ repo_name = repo_name, vm_uuid = vm_uuid,
+ send_notification_email = send_notification_email)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ users.unsetup = function(uuid)
+ {
+ endPoint <- stringr::str_interp("users/${uuid}/unsetup")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ users.update_uuid = function(uuid, new_uuid)
+ {
+ endPoint <- stringr::str_interp("users/${uuid}/update_uuid")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(new_uuid = new_uuid)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ users.merge = function(new_owner_uuid, new_user_token,
+ redirect_to_new_user = NULL)
+ {
+ endPoint <- stringr::str_interp("users/merge")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(new_owner_uuid = new_owner_uuid,
+ new_user_token = new_user_token, redirect_to_new_user = redirect_to_new_user)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ users.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
+ {
+ endPoint <- stringr::str_interp("users")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ api_client_authorizations.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ api_client_authorizations.create = function(apiclientauthorization,
+ ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("api_client_authorizations")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(apiclientauthorization) > 0)
+ body <- jsonlite::toJSON(list(apiclientauthorization = apiclientauthorization),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ api_client_authorizations.update = function(apiclientauthorization, uuid)
+ {
+ endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(apiclientauthorization) > 0)
+ body <- jsonlite::toJSON(list(apiclientauthorization = apiclientauthorization),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ api_client_authorizations.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ api_client_authorizations.create_system_auth = function(api_client_id = NULL, scopes = NULL)
+ {
+ endPoint <- stringr::str_interp("api_client_authorizations/create_system_auth")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(api_client_id = api_client_id,
+ scopes = scopes)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ api_client_authorizations.current = function()
+ {
+ endPoint <- stringr::str_interp("api_client_authorizations/current")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ api_client_authorizations.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("api_client_authorizations")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ containers.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("containers/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ containers.create = function(container, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("containers")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(container) > 0)
+ body <- jsonlite::toJSON(list(container = container),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ containers.update = function(container, uuid)
+ {
+ endPoint <- stringr::str_interp("containers/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(container) > 0)
+ body <- jsonlite::toJSON(list(container = container),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ containers.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("containers/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ containers.auth = function(uuid)
+ {
+ endPoint <- stringr::str_interp("containers/${uuid}/auth")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ containers.lock = function(uuid)
+ {
+ endPoint <- stringr::str_interp("containers/${uuid}/lock")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ containers.unlock = function(uuid)
+ {
+ endPoint <- stringr::str_interp("containers/${uuid}/unlock")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ containers.secret_mounts = function(uuid)
+ {
+ endPoint <- stringr::str_interp("containers/${uuid}/secret_mounts")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ containers.current = function()
+ {
+ endPoint <- stringr::str_interp("containers/current")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ containers.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("containers")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ api_clients.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("api_clients/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ api_clients.create = function(apiclient, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("api_clients")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(apiclient) > 0)
+ body <- jsonlite::toJSON(list(apiclient = apiclient),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ api_clients.update = function(apiclient, uuid)
+ {
+ endPoint <- stringr::str_interp("api_clients/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(apiclient) > 0)
+ body <- jsonlite::toJSON(list(apiclient = apiclient),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ api_clients.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("api_clients/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ api_clients.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("api_clients")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ container_requests.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("container_requests/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ container_requests.create = function(containerrequest,
+ ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("container_requests")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(containerrequest) > 0)
+ body <- jsonlite::toJSON(list(containerrequest = containerrequest),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ container_requests.update = function(containerrequest, uuid)
+ {
+ endPoint <- stringr::str_interp("container_requests/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(containerrequest) > 0)
+ body <- jsonlite::toJSON(list(containerrequest = containerrequest),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ container_requests.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("container_requests/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ container_requests.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("container_requests")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ authorized_keys.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("authorized_keys/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ authorized_keys.create = function(authorizedkey,
+ ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("authorized_keys")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(authorizedkey) > 0)
+ body <- jsonlite::toJSON(list(authorizedkey = authorizedkey),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ authorized_keys.update = function(authorizedkey, uuid)
+ {
+ endPoint <- stringr::str_interp("authorized_keys/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(authorizedkey) > 0)
+ body <- jsonlite::toJSON(list(authorizedkey = authorizedkey),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ authorized_keys.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("authorized_keys/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ authorized_keys.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("authorized_keys")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ collections.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("collections/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ collections.create = function(collection, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("collections")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(collection) > 0)
+ body <- jsonlite::toJSON(list(collection = collection),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ collections.update = function(collection, uuid)
+ {
+ endPoint <- stringr::str_interp("collections/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(collection) > 0)
+ body <- jsonlite::toJSON(list(collection = collection),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ collections.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("collections/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ collections.provenance = function(uuid)
+ {
+ endPoint <- stringr::str_interp("collections/${uuid}/provenance")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ collections.used_by = function(uuid)
+ {
+ endPoint <- stringr::str_interp("collections/${uuid}/used_by")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ collections.trash = function(uuid)
+ {
+ endPoint <- stringr::str_interp("collections/${uuid}/trash")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ collections.untrash = function(uuid)
+ {
+ endPoint <- stringr::str_interp("collections/${uuid}/untrash")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ collections.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact", include_trash = NULL)
+ {
+ endPoint <- stringr::str_interp("collections")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count,
+ include_trash = include_trash)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ humans.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("humans/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ humans.create = function(human, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("humans")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(human) > 0)
+ body <- jsonlite::toJSON(list(human = human),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ humans.update = function(human, uuid)
+ {
+ endPoint <- stringr::str_interp("humans/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(human) > 0)
+ body <- jsonlite::toJSON(list(human = human),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ humans.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("humans/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ humans.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
+ {
+ endPoint <- stringr::str_interp("humans")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ job_tasks.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("job_tasks/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ job_tasks.create = function(jobtask, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("job_tasks")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(jobtask) > 0)
+ body <- jsonlite::toJSON(list(jobtask = jobtask),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ job_tasks.update = function(jobtask, uuid)
+ {
+ endPoint <- stringr::str_interp("job_tasks/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(jobtask) > 0)
+ body <- jsonlite::toJSON(list(jobtask = jobtask),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ job_tasks.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("job_tasks/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ job_tasks.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("job_tasks")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ jobs.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("jobs/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ jobs.create = function(job, ensure_unique_name = "false",
+ find_or_create = "false", filters = NULL,
+ minimum_script_version = NULL, exclude_script_versions = NULL)
+ {
+ endPoint <- stringr::str_interp("jobs")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name,
+ find_or_create = find_or_create, filters = filters,
+ minimum_script_version = minimum_script_version,
+ exclude_script_versions = exclude_script_versions)
+
+ if(length(job) > 0)
+ body <- jsonlite::toJSON(list(job = job),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ jobs.update = function(job, uuid)
+ {
+ endPoint <- stringr::str_interp("jobs/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(job) > 0)
+ body <- jsonlite::toJSON(list(job = job),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ jobs.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("jobs/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ jobs.queue = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
+ {
+ endPoint <- stringr::str_interp("jobs/queue")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ jobs.queue_size = function()
+ {
+ endPoint <- stringr::str_interp("jobs/queue_size")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ jobs.cancel = function(uuid)
+ {
+ endPoint <- stringr::str_interp("jobs/${uuid}/cancel")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ jobs.lock = function(uuid)
+ {
+ endPoint <- stringr::str_interp("jobs/${uuid}/lock")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ jobs.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
+ {
+ endPoint <- stringr::str_interp("jobs")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_disks.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("keep_disks/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_disks.create = function(keepdisk, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("keep_disks")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(keepdisk) > 0)
+ body <- jsonlite::toJSON(list(keepdisk = keepdisk),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_disks.update = function(keepdisk, uuid)
+ {
+ endPoint <- stringr::str_interp("keep_disks/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(keepdisk) > 0)
+ body <- jsonlite::toJSON(list(keepdisk = keepdisk),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_disks.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("keep_disks/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_disks.ping = function(uuid = NULL, ping_secret,
+ node_uuid = NULL, filesystem_uuid = NULL,
+ service_host = NULL, service_port, service_ssl_flag)
+ {
+ endPoint <- stringr::str_interp("keep_disks/ping")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(uuid = uuid, ping_secret = ping_secret,
+ node_uuid = node_uuid, filesystem_uuid = filesystem_uuid,
+ service_host = service_host, service_port = service_port,
+ service_ssl_flag = service_ssl_flag)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_disks.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("keep_disks")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ nodes.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("nodes/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ nodes.create = function(node, ensure_unique_name = "false",
+ assign_slot = NULL)
+ {
+ endPoint <- stringr::str_interp("nodes")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name,
+ assign_slot = assign_slot)
+
+ if(length(node) > 0)
+ body <- jsonlite::toJSON(list(node = node),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ nodes.update = function(node, uuid, assign_slot = NULL)
+ {
+ endPoint <- stringr::str_interp("nodes/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(assign_slot = assign_slot)
+
+ if(length(node) > 0)
+ body <- jsonlite::toJSON(list(node = node),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ nodes.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("nodes/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ nodes.ping = function(uuid, ping_secret)
+ {
+ endPoint <- stringr::str_interp("nodes/${uuid}/ping")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ping_secret = ping_secret)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ nodes.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
+ {
+ endPoint <- stringr::str_interp("nodes")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ links.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("links/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ links.create = function(link, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("links")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(link) > 0)
+ body <- jsonlite::toJSON(list(link = link),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ links.update = function(link, uuid)
+ {
+ endPoint <- stringr::str_interp("links/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(link) > 0)
+ body <- jsonlite::toJSON(list(link = link),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ links.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("links/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ links.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
+ {
+ endPoint <- stringr::str_interp("links")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ links.get_permissions = function(uuid)
+ {
+ endPoint <- stringr::str_interp("permissions/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_services.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("keep_services/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_services.create = function(keepservice,
+ ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("keep_services")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(keepservice) > 0)
+ body <- jsonlite::toJSON(list(keepservice = keepservice),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_services.update = function(keepservice, uuid)
+ {
+ endPoint <- stringr::str_interp("keep_services/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(keepservice) > 0)
+ body <- jsonlite::toJSON(list(keepservice = keepservice),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_services.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("keep_services/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_services.accessible = function()
+ {
+ endPoint <- stringr::str_interp("keep_services/accessible")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_services.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("keep_services")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ pipeline_templates.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ pipeline_templates.create = function(pipelinetemplate,
+ ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("pipeline_templates")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(pipelinetemplate) > 0)
+ body <- jsonlite::toJSON(list(pipelinetemplate = pipelinetemplate),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ pipeline_templates.update = function(pipelinetemplate, uuid)
+ {
+ endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(pipelinetemplate) > 0)
+ body <- jsonlite::toJSON(list(pipelinetemplate = pipelinetemplate),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ pipeline_templates.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ pipeline_templates.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("pipeline_templates")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ pipeline_instances.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ pipeline_instances.create = function(pipelineinstance,
+ ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("pipeline_instances")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(pipelineinstance) > 0)
+ body <- jsonlite::toJSON(list(pipelineinstance = pipelineinstance),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ pipeline_instances.update = function(pipelineinstance, uuid)
+ {
+ endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(pipelineinstance) > 0)
+ body <- jsonlite::toJSON(list(pipelineinstance = pipelineinstance),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ pipeline_instances.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ pipeline_instances.cancel = function(uuid)
+ {
+ endPoint <- stringr::str_interp("pipeline_instances/${uuid}/cancel")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ pipeline_instances.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("pipeline_instances")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ repositories.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("repositories/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ repositories.create = function(repository, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("repositories")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(repository) > 0)
+ body <- jsonlite::toJSON(list(repository = repository),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ repositories.update = function(repository, uuid)
+ {
+ endPoint <- stringr::str_interp("repositories/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(repository) > 0)
+ body <- jsonlite::toJSON(list(repository = repository),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ repositories.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("repositories/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ repositories.get_all_permissions = function()
+ {
+ endPoint <- stringr::str_interp("repositories/get_all_permissions")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ repositories.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("repositories")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ specimens.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("specimens/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ specimens.create = function(specimen, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("specimens")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(specimen) > 0)
+ body <- jsonlite::toJSON(list(specimen = specimen),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ specimens.update = function(specimen, uuid)
+ {
+ endPoint <- stringr::str_interp("specimens/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(specimen) > 0)
+ body <- jsonlite::toJSON(list(specimen = specimen),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ specimens.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("specimens/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ specimens.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("specimens")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ logs.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("logs/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ logs.create = function(log, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("logs")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(log) > 0)
+ body <- jsonlite::toJSON(list(log = log),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ logs.update = function(log, uuid)
+ {
+ endPoint <- stringr::str_interp("logs/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(log) > 0)
+ body <- jsonlite::toJSON(list(log = log),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ logs.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("logs/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- "Arvados",
+ logs.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
+ {
+ endPoint <- stringr::str_interp("logs")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- fields = list(
+ traits.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("traits/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- getToken = "function",
- getHostName = "function",
+ traits.create = function(trait, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("traits")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(trait) > 0)
+ body <- jsonlite::toJSON(list(trait = trait),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- #Todo(Fudo): These are hardcoded and for debug only. Remove them later on.
- getWebDavToken = "function",
- getWebDavHostName = "function",
+ traits.update = function(trait, uuid)
+ {
+ endPoint <- stringr::str_interp("traits/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(trait) > 0)
+ body <- jsonlite::toJSON(list(trait = trait),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- collection_get = "function",
- collection_list = "function",
- collection_create = "function",
- collection_update = "function",
- collection_delete = "function"
- ),
+ traits.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("traits/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- methods = list(
+ traits.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
+ {
+ endPoint <- stringr::str_interp("traits")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- initialize = function(auth_token = NULL, host_name = NULL, webDavToken = NULL, webDavHostName = NULL)
- {
- # Private state
- if(!is.null(host_name))
- Sys.setenv(ARVADOS_API_HOST = host_name)
+ virtual_machines.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("virtual_machines/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- if(!is.null(auth_token))
- Sys.setenv(ARVADOS_API_TOKEN = auth_token)
+ virtual_machines.create = function(virtualmachine,
+ ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("virtual_machines")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(virtualmachine) > 0)
+ body <- jsonlite::toJSON(list(virtualmachine = virtualmachine),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- host <- Sys.getenv("ARVADOS_API_HOST");
- token <- Sys.getenv("ARVADOS_API_TOKEN");
+ virtual_machines.update = function(virtualmachine, uuid)
+ {
+ endPoint <- stringr::str_interp("virtual_machines/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(virtualmachine) > 0)
+ body <- jsonlite::toJSON(list(virtualmachine = virtualmachine),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- if(host == "" | token == "")
- stop("Please provide host name and authentification token or set ARVADOS_API_HOST and ARVADOS_API_TOKEN environmental variables.")
+ virtual_machines.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("virtual_machines/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- version <- "v1"
- host <- paste0("https://", host, "/arvados/", version, "/")
+ virtual_machines.logins = function(uuid)
+ {
+ endPoint <- stringr::str_interp("virtual_machines/${uuid}/logins")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- # Public methods
- getToken <<- function() { token }
- getHostName <<- function() { host }
+ virtual_machines.get_all_logins = function()
+ {
+ endPoint <- stringr::str_interp("virtual_machines/get_all_logins")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- #Todo(Fudo): Hardcoded credentials to WebDAV server. Remove them later
- getWebDavToken <<- function() { webDavToken }
- getWebDavHostName <<- function() { webDavHostName }
+ virtual_machines.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("virtual_machines")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- collection_get <<- function(uuid)
- {
- collection_url <- paste0(host, "collections/", uuid)
- headers <- list(Authorization = paste("OAuth2", token))
+ workflows.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("workflows/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- http <- HttpRequest()
- serverResponse <- http$GET(collection_url, headers)
+ workflows.create = function(workflow, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("workflows")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(workflow) > 0)
+ body <- jsonlite::toJSON(list(workflow = workflow),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- httpParser <- HttpParser()
- collection <- httpParser$parseJSONResponse(serverResponse)
+ workflows.update = function(workflow, uuid)
+ {
+ endPoint <- stringr::str_interp("workflows/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(workflow) > 0)
+ body <- jsonlite::toJSON(list(workflow = workflow),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- if(!is.null(collection$errors))
- stop(collection$errors)
+ workflows.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("workflows/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- collection
- }
+ workflows.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("workflows")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- collection_list <<- function(filters = NULL, limit = 100, offset = 0)
- {
- collection_url <- paste0(host, "collections")
- headers <- list(Authorization = paste("OAuth2", token))
+ groups.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("groups/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- http <- HttpRequest()
- serverResponse <- http$GET(collection_url, headers, NULL, filters, limit, offset)
+ groups.create = function(group, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("groups")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(group) > 0)
+ body <- jsonlite::toJSON(list(group = group),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- httpParser <- HttpParser()
- collection <- httpParser$parseJSONResponse(serverResponse)
+ groups.update = function(group, uuid)
+ {
+ endPoint <- stringr::str_interp("groups/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(group) > 0)
+ body <- jsonlite::toJSON(list(group = group),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- if(!is.null(collection$errors))
- stop(collection$errors)
+ groups.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("groups/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- collection
- }
+ groups.contents = function(filters = NULL,
+ where = NULL, order = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact",
+ include_trash = NULL, uuid = NULL, recursive = NULL)
+ {
+ endPoint <- stringr::str_interp("groups/contents")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, distinct = distinct, limit = limit,
+ offset = offset, count = count, include_trash = include_trash,
+ uuid = uuid, recursive = recursive)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- collection_delete <<- function(uuid)
- {
- collection_url <- paste0(host, "collections/", uuid)
- headers <- list("Authorization" = paste("OAuth2", token),
- "Content-Type" = "application/json")
+ groups.trash = function(uuid)
+ {
+ endPoint <- stringr::str_interp("groups/${uuid}/trash")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- http <- HttpRequest()
- serverResponse <- http$DELETE(collection_url, headers)
+ groups.untrash = function(uuid)
+ {
+ endPoint <- stringr::str_interp("groups/${uuid}/untrash")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- httpParser <- HttpParser()
- collection <- httpParser$parseJSONResponse(serverResponse)
+ groups.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact",
+ include_trash = NULL)
+ {
+ endPoint <- stringr::str_interp("groups")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count,
+ include_trash = include_trash)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- if(!is.null(collection$errors))
- stop(collection$errors)
+ user_agreements.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("user_agreements/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- collection
- }
+ user_agreements.create = function(useragreement,
+ ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("user_agreements")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(useragreement) > 0)
+ body <- jsonlite::toJSON(list(useragreement = useragreement),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- collection_update <<- function(uuid, body)
- {
- collection_url <- paste0(host, "collections/", uuid)
- headers <- list("Authorization" = paste("OAuth2", token),
- "Content-Type" = "application/json")
- body <- jsonlite::toJSON(body, auto_unbox = T)
+ user_agreements.update = function(useragreement, uuid)
+ {
+ endPoint <- stringr::str_interp("user_agreements/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(useragreement) > 0)
+ body <- jsonlite::toJSON(list(useragreement = useragreement),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- http <- HttpRequest()
- serverResponse <- http$PUT(collection_url, headers, body)
+ user_agreements.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("user_agreements/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- httpParser <- HttpParser()
- collection <- httpParser$parseJSONResponse(serverResponse)
+ user_agreements.signatures = function()
+ {
+ endPoint <- stringr::str_interp("user_agreements/signatures")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- if(!is.null(collection$errors))
- stop(collection$errors)
+ user_agreements.sign = function()
+ {
+ endPoint <- stringr::str_interp("user_agreements/sign")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- collection
- }
+ user_agreements.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
+ {
+ endPoint <- stringr::str_interp("user_agreements")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- collection_create <<- function(body)
- {
- collection_url <- paste0(host, "collections")
- headers <- list("Authorization" = paste("OAuth2", token),
- "Content-Type" = "application/json")
- body <- jsonlite::toJSON(body, auto_unbox = T)
+ user_agreements.new = function()
+ {
+ endPoint <- stringr::str_interp("user_agreements/new")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
- http <- HttpRequest()
- serverResponse <- http$POST(collection_url, headers, body)
+ getHostName = function() private$host,
+ getToken = function() private$token,
+ setRESTService = function(newREST) private$REST <- newREST,
+ getRESTService = function() private$REST
+ ),
- httpParser <- HttpParser()
- collection <- httpParser$parseJSONResponse(serverResponse)
+ private = list(
- if(!is.null(collection$errors))
- stop(collection$errors)
+ token = NULL,
+ host = NULL,
+ REST = NULL,
+ numRetries = NULL
+ ),
- collection
- }
- }
- )
+ cloneable = FALSE
)
projects / arvados.git / blobdiff