Make sure examples work, lots of wordsmithing and reorganizing for clarity.

[arvados.git] / doc / _config.yml

diff --git a/doc/_config.yml b/doc/_config.yml
index 9f016fcc8c01a0aa56283867d44e6a13e2efc1e4..20b9139986d38bfff620452945ae87b9ae7affa9 100644 (file)
--- a/doc/_config.yml
+++ b/doc/_config.yml
@@ -27,38 +27,37 @@ navbar:
     - Run a workflow using Workbench:
       - user/getting_started/workbench.html.textile.liquid
       - user/tutorials/tutorial-workflow-workbench.html.textile.liquid
-      - user/composer/composer.html.textile.liquid
+    - Working at the Command Line:
+      - user/getting_started/setup-cli.html.textile.liquid
+      - user/reference/api-tokens.html.textile.liquid
+      - user/getting_started/check-environment.html.textile.liquid
     - Access an Arvados virtual machine:
       - user/getting_started/vm-login-with-webshell.html.textile.liquid
       - user/getting_started/ssh-access-unix.html.textile.liquid
       - user/getting_started/ssh-access-windows.html.textile.liquid
-      - user/getting_started/check-environment.html.textile.liquid
-      - user/reference/api-tokens.html.textile.liquid
     - Working with data sets:
       - user/tutorials/tutorial-keep.html.textile.liquid
       - user/tutorials/tutorial-keep-get.html.textile.liquid
       - user/tutorials/tutorial-keep-mount-gnu-linux.html.textile.liquid
       - user/tutorials/tutorial-keep-mount-os-x.html.textile.liquid
       - user/tutorials/tutorial-keep-mount-windows.html.textile.liquid
-      - user/topics/keep.html.textile.liquid
       - user/tutorials/tutorial-keep-collection-lifecycle.html.textile.liquid
       - user/topics/arv-copy.html.textile.liquid
-      - user/topics/storage-classes.html.textile.liquid
       - user/topics/collection-versioning.html.textile.liquid
-    - Working with git repositories:
-      - user/tutorials/add-new-repository.html.textile.liquid
-      - user/tutorials/git-arvados-guide.html.textile.liquid
-    - Running workflows at the command line:
+      - user/topics/storage-classes.html.textile.liquid
+      - user/topics/keep.html.textile.liquid
+    - Data Analysis with Workflows:
       - user/cwl/cwl-runner.html.textile.liquid
       - user/cwl/cwl-run-options.html.textile.liquid
-    - Develop an Arvados workflow:
-      - user/tutorials/intro-crunch.html.textile.liquid
       - user/tutorials/writing-cwl-workflow.html.textile.liquid
+      - user/topics/arv-docker.html.textile.liquid
       - user/cwl/cwl-style.html.textile.liquid
-      - user/cwl/federated-workflows.html.textile.liquid
       - user/cwl/cwl-extensions.html.textile.liquid
+      - user/cwl/federated-workflows.html.textile.liquid
       - user/cwl/cwl-versions.html.textile.liquid
-      - user/topics/arv-docker.html.textile.liquid
+    - Working with git repositories:
+      - user/tutorials/add-new-repository.html.textile.liquid
+      - user/tutorials/git-arvados-guide.html.textile.liquid
     - Reference:
       - user/topics/link-accounts.html.textile.liquid
       - user/reference/cookbook.html.textile.liquid
@@ -75,8 +74,9 @@ navbar:
       - sdk/python/example.html.textile.liquid
       - sdk/python/python.html.textile.liquid
       - sdk/python/arvados-fuse.html.textile.liquid
-      - sdk/python/events.html.textile.liquid
+      - sdk/python/arvados-cwl-runner.html.textile.liquid
       - sdk/python/cookbook.html.textile.liquid
+      - sdk/python/events.html.textile.liquid
     - CLI:
       - sdk/cli/install.html.textile.liquid
       - sdk/cli/index.html.textile.liquid
@@ -153,8 +153,9 @@ navbar:
       - admin/index.html.textile.liquid
     - Users and Groups:
       - admin/user-management.html.textile.liquid
-      - admin/reassign-ownership.html.textile.liquid
       - admin/user-management-cli.html.textile.liquid
+      - admin/reassign-ownership.html.textile.liquid
+      - admin/link-accounts.html.textile.liquid
       - admin/group-management.html.textile.liquid
       - admin/federation.html.textile.liquid
       - admin/merge-remote-account.html.textile.liquid
@@ -174,7 +175,7 @@ navbar:
       - admin/logs-table-management.html.textile.liquid
       - admin/workbench2-vocabulary.html.textile.liquid
       - admin/storage-classes.html.textile.liquid
-      - admin/undeleting-collections.html.textile.liquid
+      - admin/recovering-deleted-collections.html.textile.liquid
     - Cloud:
       - admin/spot-instances.html.textile.liquid
       - admin/cloudtest.html.textile.liquid
@@ -217,10 +218,12 @@ navbar:
       - install/install-ws.html.textile.liquid
       - install/install-arv-git-httpd.html.textile.liquid
       - install/install-shell-server.html.textile.liquid
+      - install/install-webshell.html.textile.liquid
     - Containers API:
-      - install/crunch2-slurm/install-compute-node.html.textile.liquid
       - install/install-jobs-image.html.textile.liquid
-      - install/install-dispatch-cloud.html.textile.liquid
+      - install/crunch2-cloud/install-compute-node.html.textile.liquid
+      - install/crunch2-cloud/install-dispatch-cloud.html.textile.liquid
+      - install/crunch2-slurm/install-compute-node.html.textile.liquid
       - install/crunch2-slurm/install-dispatch.html.textile.liquid
       - install/crunch2-slurm/install-test.html.textile.liquid
     - External dependencies: