refs #4926 Merge branch '4926-getting-started'

[arvados.git] / sdk / cli / bin / crunch-job

diff --git a/sdk/cli/bin/crunch-job b/sdk/cli/bin/crunch-job
index 3539a57a039246c35b1e92b1f8f11b51a3c0f28c..2415217a21bd4dbf6c7e2ae54cbca8d915870d3f 100755 (executable)
--- a/sdk/cli/bin/crunch-job
+++ b/sdk/cli/bin/crunch-job
@@ -356,8 +356,12 @@ if (!defined $no_clear_tmp) {
   my $cleanpid = fork();
   if ($cleanpid == 0)
   {
+    # Find FUSE mounts that look like Keep mounts (the mount path has the
+    # word "keep") and unmount them.  Then clean up work directories.
+    # TODO: When #5036 is done and widely deployed, we can get rid of the
+    # regular expression and just unmount everything with type fuse.keep.
     srun (["srun", "--nodelist=$nodelist", "-D", $ENV{'TMPDIR'}],
-          ['bash', '-c', 'if mount | grep -q $JOB_WORK/; then for i in $JOB_WORK/*keep $CRUNCH_TMP/task/*.keep; do /bin/fusermount -z -u $i; done; fi; sleep 1; rm -rf $JOB_WORK $CRUNCH_INSTALL $CRUNCH_TMP/task $CRUNCH_TMP/src*']);
+          ['bash', '-ec', 'mount -t fuse,fuse.keep | awk \'($3 ~ /\ykeep\y/){print $3}\' | xargs -r -n 1 fusermount -u -z; sleep 1; rm -rf $JOB_WORK $CRUNCH_INSTALL $CRUNCH_TMP/task $CRUNCH_TMP/src*']);
     exit (1);
   }
   while (1)
@@ -1846,25 +1850,24 @@ if (@ARGV) {
   if ((!$venv_built) and (-d $python_src) and can_run("virtualenv")) {
     shell_or_die("virtualenv", "--quiet", "--system-site-packages",
                  "--python=python2.7", $venv_dir);
-    shell_or_die("$venv_dir/bin/pip", "--quiet", "install", $python_src);
+    shell_or_die("$venv_dir/bin/pip", "--quiet", "install", "-I", $python_src);
     $venv_built = 1;
     $Log->("Built Python SDK virtualenv");
   }
 
-  my $pkgs;
+  my $pip_bin = "pip";
   if ($venv_built) {
     $Log->("Running in Python SDK virtualenv");
-    $pkgs = `(\Q$venv_dir/bin/pip\E freeze 2>/dev/null | grep arvados) || dpkg-query --show '*arvados*'`;
+    $pip_bin = "$venv_dir/bin/pip";
     my $orig_argv = join(" ", map { quotemeta($_); } @ARGV);
     @ARGV = ("/bin/sh", "-ec",
              ". \Q$venv_dir/bin/activate\E; exec $orig_argv");
   } elsif (-d $python_src) {
-    $Log->("Warning: virtualenv not found inside Docker container default " +
+    $Log->("Warning: virtualenv not found inside Docker container default " .
            "\$PATH. Can't install Python SDK.");
-  } else {
-    $pkgs = `(pip freeze 2>/dev/null | grep arvados) || dpkg-query --show '*arvados*'`;
   }
 
+  my $pkgs = `(\Q$pip_bin\E freeze 2>/dev/null | grep arvados) || dpkg-query --show '*arvados*'`;
   if ($pkgs) {
     $Log->("Using Arvados SDK:");
     foreach my $line (split /\n/, $pkgs) {