Logs map[string]*bytes.Buffer
sync.Mutex
WasSetRunning bool
+ callraw bool
}
type KeepTestClient struct {
t := &TestDockerClient{}
t.logReader, t.logWriter = io.Pipe()
t.finish = exitCode
- t.stop = make(chan bool)
+ t.stop = make(chan bool, 1)
t.cwd = "/"
return t
}
func (t *TestDockerClient) ContainerStart(ctx context.Context, container string, options dockertypes.ContainerStartOptions) error {
if container == "abcde" {
- go t.fn(t)
+ // t.fn gets executed in ContainerWait
return nil
} else {
return errors.New("Invalid container id")
body := make(chan dockercontainer.ContainerWaitOKBody)
err := make(chan error)
go func() {
+ t.fn(t)
body <- dockercontainer.ContainerWaitOKBody{StatusCode: int64(t.finish)}
close(body)
close(err)
}
func (t *TestDockerClient) ImageInspectWithRaw(ctx context.Context, image string) (dockertypes.ImageInspect, []byte, error) {
+ if t.finish == 2 {
+ return dockertypes.ImageInspect{}, nil, fmt.Errorf("Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?")
+ }
+
if t.imageLoaded == image {
return dockertypes.ImageInspect{}, nil, nil
} else {
}
func (t *TestDockerClient) ImageLoad(ctx context.Context, input io.Reader, quiet bool) (dockertypes.ImageLoadResponse, error) {
+ if t.finish == 2 {
+ return dockertypes.ImageLoadResponse{}, fmt.Errorf("Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?")
+ }
_, err := io.Copy(ioutil.Discard, input)
if err != nil {
return dockertypes.ImageLoadResponse{}, err
func (client *ArvTestClient) CallRaw(method, resourceType, uuid, action string,
parameters arvadosclient.Dict) (reader io.ReadCloser, err error) {
- j := []byte(`{
- "command": ["sleep", "1"],
- "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
- "cwd": ".",
- "environment": {},
- "mounts": {"/tmp": {"kind": "tmp"} },
- "output_path": "/tmp",
- "priority": 1,
- "runtime_constraints": {}
- }`)
- return ioutil.NopCloser(bytes.NewReader(j)), nil
+ var j []byte
+ if method == "GET" && resourceType == "containers" && action == "" && !client.callraw {
+ j, err = json.Marshal(client.Container)
+ } else {
+ j = []byte(`{
+ "command": ["sleep", "1"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"}, "/json": {"kind": "json", "content": {"number": 123456789123456789}}},
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`)
+ }
+ return ioutil.NopCloser(bytes.NewReader(j)), err
}
func (client *ArvTestClient) Get(resourceType string, uuid string, parameters arvadosclient.Dict, output interface{}) error {
return fmt.Sprintf("%s+%d", hash, len(buf)), len(buf), nil
}
+func (*KeepTestClient) ClearBlockCache() {
+}
+
type FileWrapper struct {
io.ReadCloser
len int64
}
+func (fw FileWrapper) Readdir(n int) ([]os.FileInfo, error) {
+ return nil, errors.New("not implemented")
+}
+
+func (fw FileWrapper) Seek(int64, int) (int64, error) {
+ return 0, errors.New("not implemented")
+}
+
func (fw FileWrapper) Size() int64 {
return fw.len
}
-func (fw FileWrapper) Seek(int64, int) (int64, error) {
+func (fw FileWrapper) Stat() (os.FileInfo, error) {
+ return nil, errors.New("not implemented")
+}
+
+func (fw FileWrapper) Truncate(int64) error {
+ return errors.New("not implemented")
+}
+
+func (fw FileWrapper) Write([]byte) (int, error) {
return 0, errors.New("not implemented")
}
return nil, errors.New("KeepError")
}
+func (KeepErrorTestClient) ClearBlockCache() {
+}
+
type KeepReadErrorTestClient struct{}
func (KeepReadErrorTestClient) PutHB(hash string, buf []byte) (string, int, error) {
return "", 0, nil
}
-type ErrorReader struct{}
-
-func (ErrorReader) Read(p []byte) (n int, err error) {
- return 0, errors.New("ErrorReader")
+func (KeepReadErrorTestClient) ClearBlockCache() {
}
-func (ErrorReader) Close() error {
- return nil
+type ErrorReader struct {
+ FileWrapper
}
-func (ErrorReader) Size() int64 {
- return 0
+func (ErrorReader) Read(p []byte) (n int, err error) {
+ return 0, errors.New("ErrorReader")
}
func (ErrorReader) Seek(int64, int) (int64, error) {
if api.CalledWith("container.state", "Complete") != nil {
c.Check(err, IsNil)
}
- c.Check(api.WasSetRunning, Equals, true)
-
- c.Check(api.Content[api.Calls-1]["container"].(arvadosclient.Dict)["log"], NotNil)
+ if exitCode != 2 {
+ c.Check(api.WasSetRunning, Equals, true)
+ c.Check(api.Content[api.Calls-2]["container"].(arvadosclient.Dict)["log"], NotNil)
+ }
if err != nil {
for k, v := range api.Logs {
cr.Container.Mounts = make(map[string]arvados.Mount)
cr.Container.Mounts["/tmp"] = arvados.Mount{Kind: "tmp"}
cr.OutputPath = "/tmp"
-
+ cr.statInterval = 5 * time.Second
err := cr.SetupMounts()
c.Check(err, IsNil)
- c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
+ "--read-write", "--crunchstat-interval=5",
+ "--mount-by-pdh", "by_id", realTemp + "/keep1"})
c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/tmp"})
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, IsNil)
- c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
+ "--read-write", "--crunchstat-interval=5",
+ "--mount-by-pdh", "by_id", realTemp + "/keep1"})
c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/out", realTemp + "/3:/tmp"})
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, IsNil)
- c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
+ "--read-write", "--crunchstat-interval=5",
+ "--mount-by-pdh", "by_id", realTemp + "/keep1"})
c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/tmp", stubCertPath + ":/etc/arvados/ca-certificates.crt:ro"})
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
err := cr.SetupMounts()
c.Check(err, IsNil)
- c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
+ "--read-write", "--crunchstat-interval=5",
+ "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
c.Check(cr.Binds, DeepEquals, []string{realTemp + "/keep1/tmp0:/keeptmp"})
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, IsNil)
- c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
+ "--read-write", "--crunchstat-interval=5",
+ "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
sort.StringSlice(cr.Binds).Sort()
c.Check(cr.Binds, DeepEquals, []string{realTemp + "/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53:/keepinp:ro",
realTemp + "/keep1/tmp0:/keepout"})
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, IsNil)
- c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
+ "--read-write", "--crunchstat-interval=5",
+ "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
sort.StringSlice(cr.Binds).Sort()
c.Check(cr.Binds, DeepEquals, []string{realTemp + "/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53:/keepinp:ro",
realTemp + "/keep1/tmp0:/keepout"})
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
}{
{in: "foo", out: `"foo"`},
{in: nil, out: `null`},
- {in: map[string]int{"foo": 123}, out: `{"foo":123}`},
+ {in: map[string]int64{"foo": 123456789123456789}, out: `{"foo":123456789123456789}`},
} {
i = 0
cr.ArvMountPoint = ""
content, err := ioutil.ReadFile(realTemp + "/2/mountdata.json")
c.Check(err, IsNil)
c.Check(content, DeepEquals, []byte(test.out))
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, IsNil)
- c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
+ "--read-write", "--crunchstat-interval=5",
+ "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/tmp", realTemp + "/keep1/tmp0:/tmp/foo:ro"})
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, NotNil)
c.Check(err, ErrorMatches, `Writable mount points are not permitted underneath the output_path.*`)
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, NotNil)
c.Check(err, ErrorMatches, `Only mount points of kind 'collection' are supported underneath the output_path.*`)
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, NotNil)
c.Check(err, ErrorMatches, `Unsupported mount kind 'tmp' for stdin.*`)
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
c.Check(api.CalledWith("container.state", "Cancelled"), NotNil)
}
+func (s *TestSuite) TestOutputSymlinkToOutput(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{}
+
+ api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ rf, _ := os.Create(t.realTemp + "/2/realfile")
+ rf.Write([]byte("foo"))
+ rf.Close()
+
+ os.Mkdir(t.realTemp+"/2/realdir", 0700)
+ rf, _ = os.Create(t.realTemp + "/2/realdir/subfile")
+ rf.Write([]byte("bar"))
+ rf.Close()
+
+ os.Symlink("/tmp/realfile", t.realTemp+"/2/file1")
+ os.Symlink("realfile", t.realTemp+"/2/file2")
+ os.Symlink("/tmp/file1", t.realTemp+"/2/file3")
+ os.Symlink("file2", t.realTemp+"/2/file4")
+ os.Symlink("realdir", t.realTemp+"/2/dir1")
+ os.Symlink("/tmp/realdir", t.realTemp+"/2/dir2")
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ for _, v := range api.Content {
+ if v["collection"] != nil {
+ collection := v["collection"].(arvadosclient.Dict)
+ if strings.Index(collection["name"].(string), "output") == 0 {
+ manifest := collection["manifest_text"].(string)
+ c.Check(manifest, Equals,
+ `. 7a2c86e102dcc231bd232aad99686dfa+15 0:3:file1 3:3:file2 6:3:file3 9:3:file4 12:3:realfile
+./dir1 37b51d194a7513e45b56f6524f2d51f2+3 0:3:subfile
+./dir2 37b51d194a7513e45b56f6524f2d51f2+3 0:3:subfile
+./realdir 37b51d194a7513e45b56f6524f2d51f2+3 0:3:subfile
+`)
+ }
+ }
+ }
+}
+
func (s *TestSuite) TestStdinCollectionMountPoint(c *C) {
helperRecord := `{
"command": ["/bin/sh", "-c", "echo $FROBIZ"],
c.Check(api.CalledWith("collection.manifest_text", "./a b1946ac92492d2347c6235b4d2611184+6 0:6:out.txt\n./b 38af5c54926b620264ab1501150cf189+5 0:5:err.txt\n"), NotNil)
}
+
+func (s *TestSuite) TestNumberRoundTrip(c *C) {
+ cr := NewContainerRunner(&ArvTestClient{callraw: true}, &KeepTestClient{}, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ cr.fetchContainerRecord()
+
+ jsondata, err := json.Marshal(cr.Container.Mounts["/json"].Content)
+
+ c.Check(err, IsNil)
+ c.Check(string(jsondata), Equals, `{"number":123456789123456789}`)
+}
+
+func (s *TestSuite) TestEvalSymlinks(c *C) {
+ cr := NewContainerRunner(&ArvTestClient{callraw: true}, &KeepTestClient{}, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+
+ realTemp, err := ioutil.TempDir("", "crunchrun_test-")
+ c.Assert(err, IsNil)
+ defer os.RemoveAll(realTemp)
+
+ cr.HostOutputDir = realTemp
+
+ // Absolute path outside output dir
+ os.Symlink("/etc/passwd", realTemp+"/p1")
+
+ // Relative outside output dir
+ os.Symlink("../zip", realTemp+"/p2")
+
+ // Circular references
+ os.Symlink("p4", realTemp+"/p3")
+ os.Symlink("p5", realTemp+"/p4")
+ os.Symlink("p3", realTemp+"/p5")
+
+ // Target doesn't exist
+ os.Symlink("p99", realTemp+"/p6")
+
+ for _, v := range []string{"p1", "p2", "p3", "p4", "p5"} {
+ info, err := os.Lstat(realTemp + "/" + v)
+ _, _, _, err = cr.derefOutputSymlink(realTemp+"/"+v, info)
+ c.Assert(err, NotNil)
+ }
+}
+
+func (s *TestSuite) TestEvalSymlinkDir(c *C) {
+ cr := NewContainerRunner(&ArvTestClient{callraw: true}, &KeepTestClient{}, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+
+ realTemp, err := ioutil.TempDir("", "crunchrun_test-")
+ c.Assert(err, IsNil)
+ defer os.RemoveAll(realTemp)
+
+ cr.HostOutputDir = realTemp
+
+ // Absolute path outside output dir
+ os.Symlink(".", realTemp+"/loop")
+
+ v := "loop"
+ info, err := os.Lstat(realTemp + "/" + v)
+ _, err = cr.UploadOutputFile(realTemp+"/"+v, info, err, []string{}, nil, "", "", 0)
+ c.Assert(err, NotNil)
+}
+
+func (s *TestSuite) TestFullBrokenDocker1(c *C) {
+ tf, err := ioutil.TempFile("", "brokenNodeHook-")
+ c.Assert(err, IsNil)
+ defer os.Remove(tf.Name())
+
+ tf.Write([]byte(`#!/bin/sh
+exec echo killme
+`))
+ tf.Close()
+ os.Chmod(tf.Name(), 0700)
+
+ ech := tf.Name()
+ brokenNodeHook = &ech
+
+ api, _, _ := FullRunHelper(c, `{
+ "command": ["echo", "hello world"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+}`, nil, 2, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, "hello world\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.state", "Queued"), NotNil)
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*unable to run containers.*")
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*Running broken node hook.*")
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*killme.*")
+
+}
+
+func (s *TestSuite) TestFullBrokenDocker2(c *C) {
+ ech := ""
+ brokenNodeHook = &ech
+
+ api, _, _ := FullRunHelper(c, `{
+ "command": ["echo", "hello world"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+}`, nil, 2, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, "hello world\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.state", "Queued"), NotNil)
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*unable to run containers.*")
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*No broken node hook.*")
+}
projects / arvados.git / blobdiff