5194: Quickfix, disambiguated getting started and user guide sections, added 'next...

[arvados.git] / doc / user / index.html.textile.liquid

diff --git a/doc/user/index.html.textile.liquid b/doc/user/index.html.textile.liquid
index 46a55aec89bdb0f8a23bb57dac62aef7d8806ca5..8dde78961fc5c5310021c14bcffdf3c53f5a5ab2 100644 (file)
--- a/doc/user/index.html.textile.liquid
+++ b/doc/user/index.html.textile.liquid
@@ -4,15 +4,17 @@ navsection: userguide
 title: Welcome to Arvados!
 ...
 
-_If you are new to Arvados and want to get started quickly, go to "Accessing Arvados Workbench.":{{site.baseurl}}/user/getting_started/workbench.html_
+_This is the User Guide. If you are new to Arvados and want to get started quickly, go to "Getting Started":{{site.baseurl}}/start/index.html instead._
 
-This guide provides an introduction to using Arvados to solve big data bioinformatics problems, including:
+This guide provides a reference for using Arvados to solve big data bioinformatics problems, including:
 
 * Robust storage of very large files, such as whole genome sequences, using the "Arvados Keep":{{site.baseurl}}/user/tutorials/tutorial-keep.html content-addressable cluster file system.
 * Running compute-intensive genomic analysis pipelines, such as alignment and variant calls using the "Arvados Crunch":{{site.baseurl}}/user/tutorials/intro-crunch.html cluster compute engine.
 * Storing and querying metadata about genome sequence files, such as human subjects and their phenotypic traits using the "Arvados Metadata Database.":{{site.baseurl}}/user/topics/tutorial-trait-search.html
 * Accessing, organizing, and sharing data, pipelines and results using the "Arvados Workbench":{{site.baseurl}}/user/getting_started/workbench.html web application.
 
+This User Guide goes into more depth than the "Getting Started guide":{{site.baseurl}}/start/index.html, covers how to develop your own pipelines in addition to using pre-existing pipelines, covers the Arvados commandline tools in addition to the Workbench graphical interface to Arvados, and can be referenced in any order.
+
 The examples in this guide use the Arvados instance located at <a href="https://{{ site.arvados_workbench_host }}/" target="_blank">https://{{ site.arvados_workbench_host }}</a>.  If you are using a different Arvados instance replace @{{ site.arvados_workbench_host }}@ with your private instance in all of the examples in this guide.
 
 Curoverse maintains a public Arvados instance located at <a href="https://workbench.qr1hi.arvadosapi.com/" target="_blank">https://workbench.qr1hi.arvadosapi.com/</a>.  You must have an account in order to use this service.  If you would like to request an account, please send an email to "arvados@curoverse.com":mailto:arvados@curoverse.com.