Filtered out all methods ending with index, show or destroy in Arvados class.
[arvados.git] / sdk / R / R / Arvados.R
index c69fe08490f462d01df52ff820f1aadd08e12127..94d5fb0851613d1ff58bed1735056cf82e1474bb 100644 (file)
@@ -6,24 +6,6 @@
 #' @name users.get
 NULL
 
-#' users.index is a method defined in Arvados class.
-#' 
-#' @usage arv$users.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return UserList object.
-#' @name users.index
-NULL
-
 #' users.create is a method defined in Arvados class.
 #' 
 #' @usage arv$users.create(user, ensure_unique_name = "false")
@@ -120,22 +102,6 @@ NULL
 #' @name users.list
 NULL
 
-#' users.show is a method defined in Arvados class.
-#' 
-#' @usage arv$users.show(uuid)
-#' @param uuid 
-#' @return User object.
-#' @name users.show
-NULL
-
-#' users.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$users.destroy(uuid)
-#' @param uuid 
-#' @return User object.
-#' @name users.destroy
-NULL
-
 #' api_client_authorizations.get is a method defined in Arvados class.
 #' 
 #' @usage arv$api_client_authorizations.get(uuid)
@@ -144,24 +110,6 @@ NULL
 #' @name api_client_authorizations.get
 NULL
 
-#' api_client_authorizations.index is a method defined in Arvados class.
-#' 
-#' @usage arv$api_client_authorizations.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return ApiClientAuthorizationList object.
-#' @name api_client_authorizations.index
-NULL
-
 #' api_client_authorizations.create is a method defined in Arvados class.
 #' 
 #' @usage arv$api_client_authorizations.create(apiclientauthorization,
@@ -225,22 +173,6 @@ NULL
 #' @name api_client_authorizations.list
 NULL
 
-#' api_client_authorizations.show is a method defined in Arvados class.
-#' 
-#' @usage arv$api_client_authorizations.show(uuid)
-#' @param uuid 
-#' @return ApiClientAuthorization object.
-#' @name api_client_authorizations.show
-NULL
-
-#' api_client_authorizations.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$api_client_authorizations.destroy(uuid)
-#' @param uuid 
-#' @return ApiClientAuthorization object.
-#' @name api_client_authorizations.destroy
-NULL
-
 #' containers.get is a method defined in Arvados class.
 #' 
 #' @usage arv$containers.get(uuid)
@@ -249,24 +181,6 @@ NULL
 #' @name containers.get
 NULL
 
-#' containers.index is a method defined in Arvados class.
-#' 
-#' @usage arv$containers.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return ContainerList object.
-#' @name containers.index
-NULL
-
 #' containers.create is a method defined in Arvados class.
 #' 
 #' @usage arv$containers.create(container,
@@ -352,22 +266,6 @@ NULL
 #' @name containers.list
 NULL
 
-#' containers.show is a method defined in Arvados class.
-#' 
-#' @usage arv$containers.show(uuid)
-#' @param uuid 
-#' @return Container object.
-#' @name containers.show
-NULL
-
-#' containers.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$containers.destroy(uuid)
-#' @param uuid 
-#' @return Container object.
-#' @name containers.destroy
-NULL
-
 #' api_clients.get is a method defined in Arvados class.
 #' 
 #' @usage arv$api_clients.get(uuid)
@@ -376,24 +274,6 @@ NULL
 #' @name api_clients.get
 NULL
 
-#' api_clients.index is a method defined in Arvados class.
-#' 
-#' @usage arv$api_clients.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return ApiClientList object.
-#' @name api_clients.index
-NULL
-
 #' api_clients.create is a method defined in Arvados class.
 #' 
 #' @usage arv$api_clients.create(apiclient,
@@ -440,22 +320,6 @@ NULL
 #' @name api_clients.list
 NULL
 
-#' api_clients.show is a method defined in Arvados class.
-#' 
-#' @usage arv$api_clients.show(uuid)
-#' @param uuid 
-#' @return ApiClient object.
-#' @name api_clients.show
-NULL
-
-#' api_clients.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$api_clients.destroy(uuid)
-#' @param uuid 
-#' @return ApiClient object.
-#' @name api_clients.destroy
-NULL
-
 #' authorized_keys.get is a method defined in Arvados class.
 #' 
 #' @usage arv$authorized_keys.get(uuid)
@@ -464,24 +328,6 @@ NULL
 #' @name authorized_keys.get
 NULL
 
-#' authorized_keys.index is a method defined in Arvados class.
-#' 
-#' @usage arv$authorized_keys.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return AuthorizedKeyList object.
-#' @name authorized_keys.index
-NULL
-
 #' authorized_keys.create is a method defined in Arvados class.
 #' 
 #' @usage arv$authorized_keys.create(authorizedkey,
@@ -528,22 +374,6 @@ NULL
 #' @name authorized_keys.list
 NULL
 
-#' authorized_keys.show is a method defined in Arvados class.
-#' 
-#' @usage arv$authorized_keys.show(uuid)
-#' @param uuid 
-#' @return AuthorizedKey object.
-#' @name authorized_keys.show
-NULL
-
-#' authorized_keys.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$authorized_keys.destroy(uuid)
-#' @param uuid 
-#' @return AuthorizedKey object.
-#' @name authorized_keys.destroy
-NULL
-
 #' container_requests.get is a method defined in Arvados class.
 #' 
 #' @usage arv$container_requests.get(uuid)
@@ -552,24 +382,6 @@ NULL
 #' @name container_requests.get
 NULL
 
-#' container_requests.index is a method defined in Arvados class.
-#' 
-#' @usage arv$container_requests.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return ContainerRequestList object.
-#' @name container_requests.index
-NULL
-
 #' container_requests.create is a method defined in Arvados class.
 #' 
 #' @usage arv$container_requests.create(containerrequest,
@@ -616,22 +428,6 @@ NULL
 #' @name container_requests.list
 NULL
 
-#' container_requests.show is a method defined in Arvados class.
-#' 
-#' @usage arv$container_requests.show(uuid)
-#' @param uuid 
-#' @return ContainerRequest object.
-#' @name container_requests.show
-NULL
-
-#' container_requests.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$container_requests.destroy(uuid)
-#' @param uuid 
-#' @return ContainerRequest object.
-#' @name container_requests.destroy
-NULL
-
 #' collections.get is a method defined in Arvados class.
 #' 
 #' @usage arv$collections.get(uuid)
@@ -640,25 +436,6 @@ NULL
 #' @name collections.get
 NULL
 
-#' collections.index is a method defined in Arvados class.
-#' 
-#' @usage arv$collections.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact", include_trash = NULL)
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @param include_trash Include collections whose is_trashed attribute is true.
-#' @return CollectionList object.
-#' @name collections.index
-NULL
-
 #' collections.create is a method defined in Arvados class.
 #' 
 #' @usage arv$collections.create(collection,
@@ -738,22 +515,6 @@ NULL
 #' @name collections.list
 NULL
 
-#' collections.show is a method defined in Arvados class.
-#' 
-#' @usage arv$collections.show(uuid)
-#' @param uuid 
-#' @return Collection object.
-#' @name collections.show
-NULL
-
-#' collections.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$collections.destroy(uuid)
-#' @param uuid 
-#' @return Collection object.
-#' @name collections.destroy
-NULL
-
 #' humans.get is a method defined in Arvados class.
 #' 
 #' @usage arv$humans.get(uuid)
@@ -762,24 +523,6 @@ NULL
 #' @name humans.get
 NULL
 
-#' humans.index is a method defined in Arvados class.
-#' 
-#' @usage arv$humans.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return HumanList object.
-#' @name humans.index
-NULL
-
 #' humans.create is a method defined in Arvados class.
 #' 
 #' @usage arv$humans.create(human, ensure_unique_name = "false")
@@ -824,22 +567,6 @@ NULL
 #' @name humans.list
 NULL
 
-#' humans.show is a method defined in Arvados class.
-#' 
-#' @usage arv$humans.show(uuid)
-#' @param uuid 
-#' @return Human object.
-#' @name humans.show
-NULL
-
-#' humans.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$humans.destroy(uuid)
-#' @param uuid 
-#' @return Human object.
-#' @name humans.destroy
-NULL
-
 #' job_tasks.get is a method defined in Arvados class.
 #' 
 #' @usage arv$job_tasks.get(uuid)
@@ -848,24 +575,6 @@ NULL
 #' @name job_tasks.get
 NULL
 
-#' job_tasks.index is a method defined in Arvados class.
-#' 
-#' @usage arv$job_tasks.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return JobTaskList object.
-#' @name job_tasks.index
-NULL
-
 #' job_tasks.create is a method defined in Arvados class.
 #' 
 #' @usage arv$job_tasks.create(jobtask, ensure_unique_name = "false")
@@ -910,22 +619,6 @@ NULL
 #' @name job_tasks.list
 NULL
 
-#' job_tasks.show is a method defined in Arvados class.
-#' 
-#' @usage arv$job_tasks.show(uuid)
-#' @param uuid 
-#' @return JobTask object.
-#' @name job_tasks.show
-NULL
-
-#' job_tasks.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$job_tasks.destroy(uuid)
-#' @param uuid 
-#' @return JobTask object.
-#' @name job_tasks.destroy
-NULL
-
 #' links.get is a method defined in Arvados class.
 #' 
 #' @usage arv$links.get(uuid)
@@ -934,24 +627,6 @@ NULL
 #' @name links.get
 NULL
 
-#' links.index is a method defined in Arvados class.
-#' 
-#' @usage arv$links.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return LinkList object.
-#' @name links.index
-NULL
-
 #' links.create is a method defined in Arvados class.
 #' 
 #' @usage arv$links.create(link, ensure_unique_name = "false")
@@ -996,22 +671,6 @@ NULL
 #' @name links.list
 NULL
 
-#' links.show is a method defined in Arvados class.
-#' 
-#' @usage arv$links.show(uuid)
-#' @param uuid 
-#' @return Link object.
-#' @name links.show
-NULL
-
-#' links.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$links.destroy(uuid)
-#' @param uuid 
-#' @return Link object.
-#' @name links.destroy
-NULL
-
 #' links.get_permissions is a method defined in Arvados class.
 #' 
 #' @usage arv$links.get_permissions(uuid)
@@ -1028,25 +687,7 @@ NULL
 #' @name jobs.get
 NULL
 
-#' jobs.index is a method defined in Arvados class.
-#' 
-#' @usage arv$jobs.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return JobList object.
-#' @name jobs.index
-NULL
-
-#' jobs.create is a method defined in Arvados class.
+#' jobs.create is a method defined in Arvados class.
 #' 
 #' @usage arv$jobs.create(job, ensure_unique_name = "false",
 #'     find_or_create = "false", filters = NULL,
@@ -1136,22 +777,6 @@ NULL
 #' @name jobs.list
 NULL
 
-#' jobs.show is a method defined in Arvados class.
-#' 
-#' @usage arv$jobs.show(uuid)
-#' @param uuid 
-#' @return Job object.
-#' @name jobs.show
-NULL
-
-#' jobs.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$jobs.destroy(uuid)
-#' @param uuid 
-#' @return Job object.
-#' @name jobs.destroy
-NULL
-
 #' keep_disks.get is a method defined in Arvados class.
 #' 
 #' @usage arv$keep_disks.get(uuid)
@@ -1160,24 +785,6 @@ NULL
 #' @name keep_disks.get
 NULL
 
-#' keep_disks.index is a method defined in Arvados class.
-#' 
-#' @usage arv$keep_disks.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return KeepDiskList object.
-#' @name keep_disks.index
-NULL
-
 #' keep_disks.create is a method defined in Arvados class.
 #' 
 #' @usage arv$keep_disks.create(keepdisk,
@@ -1240,22 +847,6 @@ NULL
 #' @name keep_disks.list
 NULL
 
-#' keep_disks.show is a method defined in Arvados class.
-#' 
-#' @usage arv$keep_disks.show(uuid)
-#' @param uuid 
-#' @return KeepDisk object.
-#' @name keep_disks.show
-NULL
-
-#' keep_disks.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$keep_disks.destroy(uuid)
-#' @param uuid 
-#' @return KeepDisk object.
-#' @name keep_disks.destroy
-NULL
-
 #' keep_services.get is a method defined in Arvados class.
 #' 
 #' @usage arv$keep_services.get(uuid)
@@ -1264,24 +855,6 @@ NULL
 #' @name keep_services.get
 NULL
 
-#' keep_services.index is a method defined in Arvados class.
-#' 
-#' @usage arv$keep_services.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return KeepServiceList object.
-#' @name keep_services.index
-NULL
-
 #' keep_services.create is a method defined in Arvados class.
 #' 
 #' @usage arv$keep_services.create(keepservice,
@@ -1335,22 +908,6 @@ NULL
 #' @name keep_services.list
 NULL
 
-#' keep_services.show is a method defined in Arvados class.
-#' 
-#' @usage arv$keep_services.show(uuid)
-#' @param uuid 
-#' @return KeepService object.
-#' @name keep_services.show
-NULL
-
-#' keep_services.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$keep_services.destroy(uuid)
-#' @param uuid 
-#' @return KeepService object.
-#' @name keep_services.destroy
-NULL
-
 #' pipeline_templates.get is a method defined in Arvados class.
 #' 
 #' @usage arv$pipeline_templates.get(uuid)
@@ -1359,24 +916,6 @@ NULL
 #' @name pipeline_templates.get
 NULL
 
-#' pipeline_templates.index is a method defined in Arvados class.
-#' 
-#' @usage arv$pipeline_templates.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return PipelineTemplateList object.
-#' @name pipeline_templates.index
-NULL
-
 #' pipeline_templates.create is a method defined in Arvados class.
 #' 
 #' @usage arv$pipeline_templates.create(pipelinetemplate,
@@ -1423,22 +962,6 @@ NULL
 #' @name pipeline_templates.list
 NULL
 
-#' pipeline_templates.show is a method defined in Arvados class.
-#' 
-#' @usage arv$pipeline_templates.show(uuid)
-#' @param uuid 
-#' @return PipelineTemplate object.
-#' @name pipeline_templates.show
-NULL
-
-#' pipeline_templates.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$pipeline_templates.destroy(uuid)
-#' @param uuid 
-#' @return PipelineTemplate object.
-#' @name pipeline_templates.destroy
-NULL
-
 #' pipeline_instances.get is a method defined in Arvados class.
 #' 
 #' @usage arv$pipeline_instances.get(uuid)
@@ -1447,24 +970,6 @@ NULL
 #' @name pipeline_instances.get
 NULL
 
-#' pipeline_instances.index is a method defined in Arvados class.
-#' 
-#' @usage arv$pipeline_instances.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return PipelineInstanceList object.
-#' @name pipeline_instances.index
-NULL
-
 #' pipeline_instances.create is a method defined in Arvados class.
 #' 
 #' @usage arv$pipeline_instances.create(pipelineinstance,
@@ -1519,22 +1024,6 @@ NULL
 #' @name pipeline_instances.list
 NULL
 
-#' pipeline_instances.show is a method defined in Arvados class.
-#' 
-#' @usage arv$pipeline_instances.show(uuid)
-#' @param uuid 
-#' @return PipelineInstance object.
-#' @name pipeline_instances.show
-NULL
-
-#' pipeline_instances.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$pipeline_instances.destroy(uuid)
-#' @param uuid 
-#' @return PipelineInstance object.
-#' @name pipeline_instances.destroy
-NULL
-
 #' nodes.get is a method defined in Arvados class.
 #' 
 #' @usage arv$nodes.get(uuid)
@@ -1543,24 +1032,6 @@ NULL
 #' @name nodes.get
 NULL
 
-#' nodes.index is a method defined in Arvados class.
-#' 
-#' @usage arv$nodes.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return NodeList object.
-#' @name nodes.index
-NULL
-
 #' nodes.create is a method defined in Arvados class.
 #' 
 #' @usage arv$nodes.create(node, ensure_unique_name = "false",
@@ -1617,22 +1088,6 @@ NULL
 #' @name nodes.list
 NULL
 
-#' nodes.show is a method defined in Arvados class.
-#' 
-#' @usage arv$nodes.show(uuid)
-#' @param uuid 
-#' @return Node object.
-#' @name nodes.show
-NULL
-
-#' nodes.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$nodes.destroy(uuid)
-#' @param uuid 
-#' @return Node object.
-#' @name nodes.destroy
-NULL
-
 #' repositories.get is a method defined in Arvados class.
 #' 
 #' @usage arv$repositories.get(uuid)
@@ -1641,24 +1096,6 @@ NULL
 #' @name repositories.get
 NULL
 
-#' repositories.index is a method defined in Arvados class.
-#' 
-#' @usage arv$repositories.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return RepositoryList object.
-#' @name repositories.index
-NULL
-
 #' repositories.create is a method defined in Arvados class.
 #' 
 #' @usage arv$repositories.create(repository,
@@ -1712,22 +1149,6 @@ NULL
 #' @name repositories.list
 NULL
 
-#' repositories.show is a method defined in Arvados class.
-#' 
-#' @usage arv$repositories.show(uuid)
-#' @param uuid 
-#' @return Repository object.
-#' @name repositories.show
-NULL
-
-#' repositories.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$repositories.destroy(uuid)
-#' @param uuid 
-#' @return Repository object.
-#' @name repositories.destroy
-NULL
-
 #' specimens.get is a method defined in Arvados class.
 #' 
 #' @usage arv$specimens.get(uuid)
@@ -1736,24 +1157,6 @@ NULL
 #' @name specimens.get
 NULL
 
-#' specimens.index is a method defined in Arvados class.
-#' 
-#' @usage arv$specimens.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return SpecimenList object.
-#' @name specimens.index
-NULL
-
 #' specimens.create is a method defined in Arvados class.
 #' 
 #' @usage arv$specimens.create(specimen,
@@ -1800,22 +1203,6 @@ NULL
 #' @name specimens.list
 NULL
 
-#' specimens.show is a method defined in Arvados class.
-#' 
-#' @usage arv$specimens.show(uuid)
-#' @param uuid 
-#' @return Specimen object.
-#' @name specimens.show
-NULL
-
-#' specimens.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$specimens.destroy(uuid)
-#' @param uuid 
-#' @return Specimen object.
-#' @name specimens.destroy
-NULL
-
 #' logs.get is a method defined in Arvados class.
 #' 
 #' @usage arv$logs.get(uuid)
@@ -1824,24 +1211,6 @@ NULL
 #' @name logs.get
 NULL
 
-#' logs.index is a method defined in Arvados class.
-#' 
-#' @usage arv$logs.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return LogList object.
-#' @name logs.index
-NULL
-
 #' logs.create is a method defined in Arvados class.
 #' 
 #' @usage arv$logs.create(log, ensure_unique_name = "false")
@@ -1885,22 +1254,6 @@ NULL
 #' @name logs.list
 NULL
 
-#' logs.show is a method defined in Arvados class.
-#' 
-#' @usage arv$logs.show(uuid)
-#' @param uuid 
-#' @return Log object.
-#' @name logs.show
-NULL
-
-#' logs.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$logs.destroy(uuid)
-#' @param uuid 
-#' @return Log object.
-#' @name logs.destroy
-NULL
-
 #' traits.get is a method defined in Arvados class.
 #' 
 #' @usage arv$traits.get(uuid)
@@ -1909,24 +1262,6 @@ NULL
 #' @name traits.get
 NULL
 
-#' traits.index is a method defined in Arvados class.
-#' 
-#' @usage arv$traits.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return TraitList object.
-#' @name traits.index
-NULL
-
 #' traits.create is a method defined in Arvados class.
 #' 
 #' @usage arv$traits.create(trait, ensure_unique_name = "false")
@@ -1971,22 +1306,6 @@ NULL
 #' @name traits.list
 NULL
 
-#' traits.show is a method defined in Arvados class.
-#' 
-#' @usage arv$traits.show(uuid)
-#' @param uuid 
-#' @return Trait object.
-#' @name traits.show
-NULL
-
-#' traits.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$traits.destroy(uuid)
-#' @param uuid 
-#' @return Trait object.
-#' @name traits.destroy
-NULL
-
 #' virtual_machines.get is a method defined in Arvados class.
 #' 
 #' @usage arv$virtual_machines.get(uuid)
@@ -1995,25 +1314,7 @@ NULL
 #' @name virtual_machines.get
 NULL
 
-#' virtual_machines.index is a method defined in Arvados class.
-#' 
-#' @usage arv$virtual_machines.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return VirtualMachineList object.
-#' @name virtual_machines.index
-NULL
-
-#' virtual_machines.create is a method defined in Arvados class.
+#' virtual_machines.create is a method defined in Arvados class.
 #' 
 #' @usage arv$virtual_machines.create(virtualmachine,
 #'     ensure_unique_name = "false")
@@ -2074,22 +1375,6 @@ NULL
 #' @name virtual_machines.list
 NULL
 
-#' virtual_machines.show is a method defined in Arvados class.
-#' 
-#' @usage arv$virtual_machines.show(uuid)
-#' @param uuid 
-#' @return VirtualMachine object.
-#' @name virtual_machines.show
-NULL
-
-#' virtual_machines.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$virtual_machines.destroy(uuid)
-#' @param uuid 
-#' @return VirtualMachine object.
-#' @name virtual_machines.destroy
-NULL
-
 #' workflows.get is a method defined in Arvados class.
 #' 
 #' @usage arv$workflows.get(uuid)
@@ -2098,24 +1383,6 @@ NULL
 #' @name workflows.get
 NULL
 
-#' workflows.index is a method defined in Arvados class.
-#' 
-#' @usage arv$workflows.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return WorkflowList object.
-#' @name workflows.index
-NULL
-
 #' workflows.create is a method defined in Arvados class.
 #' 
 #' @usage arv$workflows.create(workflow,
@@ -2162,22 +1429,6 @@ NULL
 #' @name workflows.list
 NULL
 
-#' workflows.show is a method defined in Arvados class.
-#' 
-#' @usage arv$workflows.show(uuid)
-#' @param uuid 
-#' @return Workflow object.
-#' @name workflows.show
-NULL
-
-#' workflows.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$workflows.destroy(uuid)
-#' @param uuid 
-#' @return Workflow object.
-#' @name workflows.destroy
-NULL
-
 #' groups.get is a method defined in Arvados class.
 #' 
 #' @usage arv$groups.get(uuid)
@@ -2186,25 +1437,6 @@ NULL
 #' @name groups.get
 NULL
 
-#' groups.index is a method defined in Arvados class.
-#' 
-#' @usage arv$groups.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact", include_trash = NULL)
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @param include_trash Include items whose is_trashed attribute is true.
-#' @return GroupList object.
-#' @name groups.index
-NULL
-
 #' groups.create is a method defined in Arvados class.
 #' 
 #' @usage arv$groups.create(group, ensure_unique_name = "false")
@@ -2286,22 +1518,6 @@ NULL
 #' @name groups.list
 NULL
 
-#' groups.show is a method defined in Arvados class.
-#' 
-#' @usage arv$groups.show(uuid)
-#' @param uuid 
-#' @return Group object.
-#' @name groups.show
-NULL
-
-#' groups.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$groups.destroy(uuid)
-#' @param uuid 
-#' @return Group object.
-#' @name groups.destroy
-NULL
-
 #' user_agreements.get is a method defined in Arvados class.
 #' 
 #' @usage arv$user_agreements.get(uuid)
@@ -2310,24 +1526,6 @@ NULL
 #' @name user_agreements.get
 NULL
 
-#' user_agreements.index is a method defined in Arvados class.
-#' 
-#' @usage arv$user_agreements.index(filters = NULL,
-#'     where = NULL, order = NULL, select = NULL,
-#'     distinct = NULL, limit = "100", offset = "0",
-#'     count = "exact")
-#' @param filters 
-#' @param where 
-#' @param order 
-#' @param select 
-#' @param distinct 
-#' @param limit 
-#' @param offset 
-#' @param count 
-#' @return UserAgreementList object.
-#' @name user_agreements.index
-NULL
-
 #' user_agreements.create is a method defined in Arvados class.
 #' 
 #' @usage arv$user_agreements.create(useragreement,
@@ -2395,22 +1593,6 @@ NULL
 #' @name user_agreements.new
 NULL
 
-#' user_agreements.show is a method defined in Arvados class.
-#' 
-#' @usage arv$user_agreements.show(uuid)
-#' @param uuid 
-#' @return UserAgreement object.
-#' @name user_agreements.show
-NULL
-
-#' user_agreements.destroy is a method defined in Arvados class.
-#' 
-#' @usage arv$user_agreements.destroy(uuid)
-#' @param uuid 
-#' @return UserAgreement object.
-#' @name user_agreements.destroy
-NULL
-
 #' @export
 Arvados <- R6::R6Class(
 
@@ -2495,30 +1677,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               users.index = function(filters = NULL, where = NULL,
-                       order = NULL, select = NULL, distinct = NULL,
-                       limit = "100", offset = "0", count = "exact")
-               {
-                       endPoint <- stringr::str_interp("users")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                users.create = function(user, ensure_unique_name = "false")
                {
                        endPoint <- stringr::str_interp("users")
@@ -2734,46 +1892,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               users.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("users/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               users.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("users/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                api_client_authorizations.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
@@ -2794,31 +1912,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               api_client_authorizations.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
-               {
-                       endPoint <- stringr::str_interp("api_client_authorizations")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                api_client_authorizations.create = function(apiclientauthorization,
                        ensure_unique_name = "false")
                {
@@ -2954,46 +2047,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               api_client_authorizations.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               api_client_authorizations.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                containers.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("containers/${uuid}")
@@ -3014,31 +2067,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               containers.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
-               {
-                       endPoint <- stringr::str_interp("containers")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                containers.create = function(container, ensure_unique_name = "false")
                {
                        endPoint <- stringr::str_interp("containers")
@@ -3232,9 +2260,9 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               containers.show = function(uuid)
+               api_clients.get = function(uuid)
                {
-                       endPoint <- stringr::str_interp("containers/${uuid}")
+                       endPoint <- stringr::str_interp("api_clients/${uuid}")
                        url <- paste0(private$host, endPoint)
                        headers <- list(Authorization = paste("OAuth2", private$token), 
                                        "Content-Type" = "application/json")
@@ -3252,84 +2280,19 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               containers.destroy = function(uuid)
+               api_clients.create = function(apiclient, ensure_unique_name = "false")
                {
-                       endPoint <- stringr::str_interp("containers/${uuid}")
+                       endPoint <- stringr::str_interp("api_clients")
                        url <- paste0(private$host, endPoint)
                        headers <- list(Authorization = paste("OAuth2", private$token), 
                                        "Content-Type" = "application/json")
-                       queryArgs <- NULL
+                       queryArgs <- list(ensure_unique_name = ensure_unique_name)
                        
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               api_clients.get = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("api_clients/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               api_clients.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
-               {
-                       endPoint <- stringr::str_interp("api_clients")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               api_clients.create = function(apiclient, ensure_unique_name = "false")
-               {
-                       endPoint <- stringr::str_interp("api_clients")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(ensure_unique_name = ensure_unique_name)
-                       
-                       if(length(apiclient) > 0)
-                               body <- jsonlite::toJSON(list(apiclient = apiclient), 
-                                                        auto_unbox = TRUE)
-                       else
-                               body <- NULL
+                       if(length(apiclient) > 0)
+                               body <- jsonlite::toJSON(list(apiclient = apiclient), 
+                                                        auto_unbox = TRUE)
+                       else
+                               body <- NULL
                        
                        response <- private$REST$http$exec("POST", url, headers, body,
                                                           queryArgs, private$numRetries)
@@ -3410,46 +2373,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               api_clients.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("api_clients/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               api_clients.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("api_clients/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                authorized_keys.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("authorized_keys/${uuid}")
@@ -3470,31 +2393,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               authorized_keys.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
-               {
-                       endPoint <- stringr::str_interp("authorized_keys")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                authorized_keys.create = function(authorizedkey,
                        ensure_unique_name = "false")
                {
@@ -3589,46 +2487,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               authorized_keys.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("authorized_keys/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               authorized_keys.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("authorized_keys/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                container_requests.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("container_requests/${uuid}")
@@ -3649,31 +2507,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               container_requests.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
-               {
-                       endPoint <- stringr::str_interp("container_requests")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                container_requests.create = function(containerrequest,
                        ensure_unique_name = "false")
                {
@@ -3768,46 +2601,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               container_requests.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("container_requests/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               container_requests.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("container_requests/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                collections.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("collections/${uuid}")
@@ -3828,32 +2621,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               collections.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact", include_trash = NULL)
-               {
-                       endPoint <- stringr::str_interp("collections")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count,
-                                                         include_trash = include_trash)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                collections.create = function(collection, ensure_unique_name = "false")
                {
                        endPoint <- stringr::str_interp("collections")
@@ -4028,47 +2795,7 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               collections.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("collections/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               collections.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("collections/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               humans.get = function(uuid)
+               humans.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("humans/${uuid}")
                        url <- paste0(private$host, endPoint)
@@ -4088,30 +2815,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               humans.index = function(filters = NULL, where = NULL,
-                       order = NULL, select = NULL, distinct = NULL,
-                       limit = "100", offset = "0", count = "exact")
-               {
-                       endPoint <- stringr::str_interp("humans")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                humans.create = function(human, ensure_unique_name = "false")
                {
                        endPoint <- stringr::str_interp("humans")
@@ -4204,46 +2907,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               humans.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("humans/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               humans.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("humans/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                job_tasks.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("job_tasks/${uuid}")
@@ -4264,31 +2927,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               job_tasks.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
-               {
-                       endPoint <- stringr::str_interp("job_tasks")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                job_tasks.create = function(jobtask, ensure_unique_name = "false")
                {
                        endPoint <- stringr::str_interp("job_tasks")
@@ -4382,46 +3020,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               job_tasks.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("job_tasks/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               job_tasks.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("job_tasks/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                links.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("links/${uuid}")
@@ -4442,30 +3040,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               links.index = function(filters = NULL, where = NULL,
-                       order = NULL, select = NULL, distinct = NULL,
-                       limit = "100", offset = "0", count = "exact")
-               {
-                       endPoint <- stringr::str_interp("links")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                links.create = function(link, ensure_unique_name = "false")
                {
                        endPoint <- stringr::str_interp("links")
@@ -4558,46 +3132,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               links.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("links/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               links.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("links/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                links.get_permissions = function(uuid)
                {
                        endPoint <- stringr::str_interp("permissions/${uuid}")
@@ -4638,30 +3172,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               jobs.index = function(filters = NULL, where = NULL,
-                       order = NULL, select = NULL, distinct = NULL,
-                       limit = "100", offset = "0", count = "exact")
-               {
-                       endPoint <- stringr::str_interp("jobs")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                jobs.create = function(job, ensure_unique_name = "false",
                        find_or_create = "false", filters = NULL,
                        minimum_script_version = NULL, exclude_script_versions = NULL)
@@ -4843,9 +3353,9 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               jobs.show = function(uuid)
+               keep_disks.get = function(uuid)
                {
-                       endPoint <- stringr::str_interp("jobs/${uuid}")
+                       endPoint <- stringr::str_interp("keep_disks/${uuid}")
                        url <- paste0(private$host, endPoint)
                        headers <- list(Authorization = paste("OAuth2", private$token), 
                                        "Content-Type" = "application/json")
@@ -4863,78 +3373,13 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               jobs.destroy = function(uuid)
+               keep_disks.create = function(keepdisk, ensure_unique_name = "false")
                {
-                       endPoint <- stringr::str_interp("jobs/${uuid}")
+                       endPoint <- stringr::str_interp("keep_disks")
                        url <- paste0(private$host, endPoint)
                        headers <- list(Authorization = paste("OAuth2", private$token), 
                                        "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               keep_disks.get = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("keep_disks/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               keep_disks.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
-               {
-                       endPoint <- stringr::str_interp("keep_disks")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               keep_disks.create = function(keepdisk, ensure_unique_name = "false")
-               {
-                       endPoint <- stringr::str_interp("keep_disks")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(ensure_unique_name = ensure_unique_name)
+                       queryArgs <- list(ensure_unique_name = ensure_unique_name)
                        
                        if(length(keepdisk) > 0)
                                body <- jsonlite::toJSON(list(keepdisk = keepdisk), 
@@ -5046,46 +3491,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               keep_disks.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("keep_disks/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               keep_disks.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("keep_disks/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                keep_services.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("keep_services/${uuid}")
@@ -5106,31 +3511,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               keep_services.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
-               {
-                       endPoint <- stringr::str_interp("keep_services")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                keep_services.create = function(keepservice,
                        ensure_unique_name = "false")
                {
@@ -5245,46 +3625,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               keep_services.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("keep_services/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               keep_services.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("keep_services/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                pipeline_templates.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
@@ -5305,31 +3645,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               pipeline_templates.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
-               {
-                       endPoint <- stringr::str_interp("pipeline_templates")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                pipeline_templates.create = function(pipelinetemplate,
                        ensure_unique_name = "false")
                {
@@ -5424,46 +3739,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               pipeline_templates.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               pipeline_templates.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                pipeline_instances.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
@@ -5484,31 +3759,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               pipeline_instances.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
-               {
-                       endPoint <- stringr::str_interp("pipeline_instances")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                pipeline_instances.create = function(pipelineinstance,
                        ensure_unique_name = "false")
                {
@@ -5623,9 +3873,9 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               pipeline_instances.show = function(uuid)
+               nodes.get = function(uuid)
                {
-                       endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
+                       endPoint <- stringr::str_interp("nodes/${uuid}")
                        url <- paste0(private$host, endPoint)
                        headers <- list(Authorization = paste("OAuth2", private$token), 
                                        "Content-Type" = "application/json")
@@ -5643,74 +3893,10 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               pipeline_instances.destroy = function(uuid)
+               nodes.create = function(node, ensure_unique_name = "false",
+                       assign_slot = NULL)
                {
-                       endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               nodes.get = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("nodes/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               nodes.index = function(filters = NULL, where = NULL,
-                       order = NULL, select = NULL, distinct = NULL,
-                       limit = "100", offset = "0", count = "exact")
-               {
-                       endPoint <- stringr::str_interp("nodes")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               nodes.create = function(node, ensure_unique_name = "false",
-                       assign_slot = NULL)
-               {
-                       endPoint <- stringr::str_interp("nodes")
+                       endPoint <- stringr::str_interp("nodes")
                        url <- paste0(private$host, endPoint)
                        headers <- list(Authorization = paste("OAuth2", private$token), 
                                        "Content-Type" = "application/json")
@@ -5821,46 +4007,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               nodes.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("nodes/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               nodes.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("nodes/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                repositories.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("repositories/${uuid}")
@@ -5881,31 +4027,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               repositories.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
-               {
-                       endPoint <- stringr::str_interp("repositories")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                repositories.create = function(repository, ensure_unique_name = "false")
                {
                        endPoint <- stringr::str_interp("repositories")
@@ -6019,46 +4140,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               repositories.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("repositories/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               repositories.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("repositories/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                specimens.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("specimens/${uuid}")
@@ -6079,31 +4160,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               specimens.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
-               {
-                       endPoint <- stringr::str_interp("specimens")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                specimens.create = function(specimen, ensure_unique_name = "false")
                {
                        endPoint <- stringr::str_interp("specimens")
@@ -6197,46 +4253,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               specimens.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("specimens/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               specimens.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("specimens/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                logs.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("logs/${uuid}")
@@ -6257,30 +4273,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               logs.index = function(filters = NULL, where = NULL,
-                       order = NULL, select = NULL, distinct = NULL,
-                       limit = "100", offset = "0", count = "exact")
-               {
-                       endPoint <- stringr::str_interp("logs")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                logs.create = function(log, ensure_unique_name = "false")
                {
                        endPoint <- stringr::str_interp("logs")
@@ -6373,46 +4365,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               logs.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("logs/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               logs.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("logs/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                traits.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("traits/${uuid}")
@@ -6433,30 +4385,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               traits.index = function(filters = NULL, where = NULL,
-                       order = NULL, select = NULL, distinct = NULL,
-                       limit = "100", offset = "0", count = "exact")
-               {
-                       endPoint <- stringr::str_interp("traits")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                traits.create = function(trait, ensure_unique_name = "false")
                {
                        endPoint <- stringr::str_interp("traits")
@@ -6471,75 +4399,7 @@ Arvados <- R6::R6Class(
                        else
                                body <- NULL
                        
-                       response <- private$REST$http$exec("POST", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               traits.update = function(trait, uuid)
-               {
-                       endPoint <- stringr::str_interp("traits/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       if(length(trait) > 0)
-                               body <- jsonlite::toJSON(list(trait = trait), 
-                                                        auto_unbox = TRUE)
-                       else
-                               body <- NULL
-                       
-                       response <- private$REST$http$exec("PUT", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               traits.delete = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("traits/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               traits.list = function(filters = NULL, where = NULL,
-                       order = NULL, select = NULL, distinct = NULL,
-                       limit = "100", offset = "0", count = "exact")
-               {
-                       endPoint <- stringr::str_interp("traits")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
+                       response <- private$REST$http$exec("POST", url, headers, body,
                                                           queryArgs, private$numRetries)
                        resource <- private$REST$httpParser$parseJSONResponse(response)
                        
@@ -6549,7 +4409,7 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               traits.show = function(uuid)
+               traits.update = function(trait, uuid)
                {
                        endPoint <- stringr::str_interp("traits/${uuid}")
                        url <- paste0(private$host, endPoint)
@@ -6557,9 +4417,13 @@ Arvados <- R6::R6Class(
                                        "Content-Type" = "application/json")
                        queryArgs <- NULL
                        
-                       body <- NULL
+                       if(length(trait) > 0)
+                               body <- jsonlite::toJSON(list(trait = trait), 
+                                                        auto_unbox = TRUE)
+                       else
+                               body <- NULL
                        
-                       response <- private$REST$http$exec("GET", url, headers, body,
+                       response <- private$REST$http$exec("PUT", url, headers, body,
                                                           queryArgs, private$numRetries)
                        resource <- private$REST$httpParser$parseJSONResponse(response)
                        
@@ -6569,7 +4433,7 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               traits.destroy = function(uuid)
+               traits.delete = function(uuid)
                {
                        endPoint <- stringr::str_interp("traits/${uuid}")
                        url <- paste0(private$host, endPoint)
@@ -6589,13 +4453,17 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               virtual_machines.get = function(uuid)
+               traits.list = function(filters = NULL, where = NULL,
+                       order = NULL, select = NULL, distinct = NULL,
+                       limit = "100", offset = "0", count = "exact")
                {
-                       endPoint <- stringr::str_interp("virtual_machines/${uuid}")
+                       endPoint <- stringr::str_interp("traits")
                        url <- paste0(private$host, endPoint)
                        headers <- list(Authorization = paste("OAuth2", private$token), 
                                        "Content-Type" = "application/json")
-                       queryArgs <- NULL
+                       queryArgs <- list(filters = filters, where = where,
+                                                         order = order, select = select, distinct = distinct,
+                                                         limit = limit, offset = offset, count = count)
                        
                        body <- NULL
                        
@@ -6609,18 +4477,13 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               virtual_machines.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
+               virtual_machines.get = function(uuid)
                {
-                       endPoint <- stringr::str_interp("virtual_machines")
+                       endPoint <- stringr::str_interp("virtual_machines/${uuid}")
                        url <- paste0(private$host, endPoint)
                        headers <- list(Authorization = paste("OAuth2", private$token), 
                                        "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
+                       queryArgs <- NULL
                        
                        body <- NULL
                        
@@ -6768,46 +4631,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               virtual_machines.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("virtual_machines/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               virtual_machines.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("virtual_machines/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                workflows.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("workflows/${uuid}")
@@ -6828,31 +4651,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               workflows.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
-               {
-                       endPoint <- stringr::str_interp("workflows")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                workflows.create = function(workflow, ensure_unique_name = "false")
                {
                        endPoint <- stringr::str_interp("workflows")
@@ -6946,46 +4744,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               workflows.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("workflows/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               workflows.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("workflows/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                groups.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("groups/${uuid}")
@@ -7006,32 +4764,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               groups.index = function(filters = NULL, where = NULL,
-                       order = NULL, select = NULL, distinct = NULL,
-                       limit = "100", offset = "0", count = "exact",
-                       include_trash = NULL)
-               {
-                       endPoint <- stringr::str_interp("groups")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count,
-                                                         include_trash = include_trash)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                groups.create = function(group, ensure_unique_name = "false")
                {
                        endPoint <- stringr::str_interp("groups")
@@ -7192,46 +4924,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               groups.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("groups/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               groups.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("groups/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                user_agreements.get = function(uuid)
                {
                        endPoint <- stringr::str_interp("user_agreements/${uuid}")
@@ -7252,31 +4944,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               user_agreements.index = function(filters = NULL,
-                       where = NULL, order = NULL, select = NULL,
-                       distinct = NULL, limit = "100", offset = "0",
-                       count = "exact")
-               {
-                       endPoint <- stringr::str_interp("user_agreements")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- list(filters = filters, where = where,
-                                                         order = order, select = select, distinct = distinct,
-                                                         limit = limit, offset = offset, count = count)
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                user_agreements.create = function(useragreement,
                        ensure_unique_name = "false")
                {
@@ -7431,46 +5098,6 @@ Arvados <- R6::R6Class(
                        resource
                },
 
-               user_agreements.show = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("user_agreements/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("GET", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
-               user_agreements.destroy = function(uuid)
-               {
-                       endPoint <- stringr::str_interp("user_agreements/${uuid}")
-                       url <- paste0(private$host, endPoint)
-                       headers <- list(Authorization = paste("OAuth2", private$token), 
-                                       "Content-Type" = "application/json")
-                       queryArgs <- NULL
-                       
-                       body <- NULL
-                       
-                       response <- private$REST$http$exec("DELETE", url, headers, body,
-                                                          queryArgs, private$numRetries)
-                       resource <- private$REST$httpParser$parseJSONResponse(response)
-                       
-                       if(!is.null(resource$errors))
-                               stop(resource$errors)
-                       
-                       resource
-               },
-
                getHostName = function() private$host,
                getToken = function() private$token,
                setRESTService = function(newREST) private$REST <- newREST,