Merge branch 'master' into 2352-remove-attrs

[arvados.git] / sdk / cli / bin / arv-run-pipeline-instance

diff --git a/sdk/cli/bin/arv-run-pipeline-instance b/sdk/cli/bin/arv-run-pipeline-instance
index 7ddea30cf76ce1ebd27c9083e6d6ecef1a1776a8..b86b217194ee16f0dc0498201583a8ffa0fcfc5e 100755 (executable)
--- a/sdk/cli/bin/arv-run-pipeline-instance
+++ b/sdk/cli/bin/arv-run-pipeline-instance
@@ -312,19 +312,19 @@ class JobCache
       []
     end
   end
-  def self.create(attributes)
+  def self.create(job, create_params)
     @cache ||= {}
     result = $client.execute(:api_method => $arvados.jobs.create,
                              :parameters => {
                                :api_token => ENV['ARVADOS_API_TOKEN'],
-                               :job => attributes.to_json
-                             },
+                               :job => job.to_json
+                             }.merge(create_params),
                              :authenticated => false)
     j = JSON.parse result.body, :symbolize_names => true
     if j.is_a? Hash and j[:uuid]
       @cache[j[:uuid]] = j
     else
-      debuglog "create job: #{j[:errors] rescue nil} with attribute #{attributes}", 0
+      debuglog "create job: #{j[:errors] rescue nil} with attributes #{job}", 0
       nil
     end
   end
@@ -413,15 +413,24 @@ class WhRunPipelineInstance
   end
 
   def setup_instance
-    @instance ||= PipelineInstance.
-      create(:components => @components,
+    if $options[:submit]
+      @instance ||= PipelineInstance.
+        create(:components => @components,
+              :pipeline_template_uuid => @template[:uuid],
+              :state => 'New')
+    else
+      @instance ||= PipelineInstance.
+        create(:components => @components,
              :pipeline_template_uuid => @template[:uuid],
-             :active => true)
+             :state => 'RunningOnClient')
+    end
     self
   end
 
   def run
     moretodo = true
+    interrupted = false
+
     while moretodo
       moretodo = false
       @components.each do |cname, c|
@@ -437,15 +446,27 @@ class WhRunPipelineInstance
           # No job yet associated with this component and is component inputs
           # are fully specified (any output_of script_parameters are resolved
           # to real value)
-          job = JobCache.create({:script => c[:script],
-                            :script_parameters => c[:script_parameters],
-                            :script_version => c[:script_version],
-                            :repository => c[:repository],
-                            :minimum_script_version => c[:minimum_script_version],
-                            :exclude_script_versions => c[:exclude_minimum_script_versions],
-                            :nondeterministic => c[:nondeterministic],
-                            :no_reuse => @options[:no_reuse],
-                            :output_is_persistent => c[:output_is_persistent] || false})
+          job = JobCache.create({
+            :script => c[:script],
+            :script_parameters => c[:script_parameters],
+            :script_version => c[:script_version],
+            :repository => c[:repository],
+            :nondeterministic => c[:nondeterministic],
+            :output_is_persistent => c[:output_is_persistent] || false,
+            # TODO: Delete the following three attributes when
+            # supporting pre-20140418 API servers is no longer
+            # important. New API servers take these as flags that
+            # control behavior of create, rather than job attributes.
+            :minimum_script_version => c[:minimum_script_version],
+            :exclude_script_versions => c[:exclude_minimum_script_versions],
+            :no_reuse => @options[:no_reuse] || c[:nondeterministic],
+          }, {
+            # This is the right place to put these attributes when
+            # dealing with new API servers.
+            :minimum_script_version => c[:minimum_script_version],
+            :exclude_script_versions => c[:exclude_minimum_script_versions],
+            :find_or_create => !(@options[:no_reuse] || c[:nondeterministic]),
+          })
           if job
             debuglog "component #{cname} new job #{job[:uuid]}"
             c[:job] = job
@@ -520,7 +541,6 @@ class WhRunPipelineInstance
         end
       end
       @instance[:components] = @components
-      @instance[:active] = moretodo
       report_status
 
       if @options[:no_wait]
@@ -532,7 +552,8 @@ class WhRunPipelineInstance
           sleep 10
         rescue Interrupt
           debuglog "interrupt", 0
-          abort
+          interrupted = true
+          break
         end
       end
     end
@@ -553,17 +574,30 @@ class WhRunPipelineInstance
       end
     end
 
-    if ended == @components.length or failed > 0
-      @instance[:active] = false
-      @instance[:success] = (succeeded == @components.length)
+    success = (succeeded == @components.length)
+
+    if interrupted
+     if success
+        @instance[:state] = 'Complete'
+     else
+        @instance[:state] = 'Paused'
+      end
+    else
+      if ended == @components.length or failed > 0
+        @instance[:state] = success ? 'Complete' : 'Failed'
+      end
     end
 
+    # set components_summary
+    components_summary = {"todo" => @components.length - ended, "done" => succeeded, "failed" => failed}
+    @instance[:components_summary] = components_summary
+
     @instance.save
   end
 
   def cleanup
-    if @instance
-      @instance[:active] = false
+    if @instance and @instance[:state] == 'RunningOnClient'
+      @instance[:state] = 'Paused'
       @instance.save
     end
   end