+<%
+ collections = [current_obj.outputs, current_obj.docker_image].flatten.compact.uniq
+ collections_pdhs = collections.select {|x| !CollectionsHelper.match(x).nil?}.uniq.compact
+ collections_uuids = collections - collections_pdhs
+ preload_collections_for_objects collections_uuids if collections_uuids.any?
+ preload_for_pdhs collections_pdhs if collections_pdhs.any?
+
+ preload_objects_for_dataclass(Repository, [current_obj.repository], :name) if current_obj.repository
+%>
+
<div class="container">
<div class="row">
<div class="col-md-5">
No <%= current_obj.title %> has been submitted yet.
<% else %>
<table>
- <% keys = [:uuid, :modified_by_user_uuid, :created_at, :started_at, :finished_at, :container_uuid, :priority] %>
- <% keys << :outputs if @object.uuid == current_obj.uuid %>
+ <% keys = [:uuid, :modified_by_user_uuid, :created_at, :started_at, :finished_at, :container_uuid] %>
+ <% keys << :log_collection if @object.uuid != current_obj.uuid %>
+ <% keys << :outputs %>
<% keys.each do |k| %>
- <% val = current_obj.send(k) if current_obj.respond_to?(k) %>
- <% has_val = val %>
- <% has_val = val.andand.any? if k == :outputs %>
+ <%
+ val = current_obj.send(k) if current_obj.respond_to?(k)
+ if k == :outputs
+ has_val = val.andand.any?
+ elsif k == :log_collection and current_obj.state_label == "Running"
+ has_val = true
+ else
+ has_val = val
+ end
+ %>
<% if has_val %>
<tr>
<td style="padding-right: 1em">
<% else %>
<%= render partial: 'work_units/show_outputs', locals: {id: current_obj.uuid, outputs: val, align:""} %>
<% end %>
+ <% elsif k == :log_collection %>
+ <%= render partial: 'work_units/show_log_link', locals: {wu: current_obj} %>
<% else %>
<%= val %>
<% end %>
</div>
<div class="col-md-6">
<table>
- <% # link to repo tree/file only if the repo is readable
- # and the commit is a sha1...
- repo =
- (/^[0-9a-f]{40}$/ =~ current_obj.script_version and
- Repository.where(name: current_obj.repository).first)
-
- # ...and the api server provides an http:// or https:// url
+ <% # link to repo tree/file only if the repo is readable and the commit is a sha1
+ repo = (/^[0-9a-f]{40}$/ =~ current_obj.script_version and
+ current_obj.repository and
+ object_for_dataclass(Repository, current_obj.repository, :name))
repo = nil unless repo.andand.http_fetch_url
%>
- <% [:script, :repository, :script_version, :supplied_script_version, :nondeterministic,
- :command, :cwd, :environment, :mounts, :output_path].each do |k| %>
+ <% [:priority, :script, :repository, :script_version, :supplied_script_version, :nondeterministic,
+ :runtime_constraints, :requesting_container_uuid].each do |k| %>
<% val = current_obj.send(k) if current_obj.respond_to?(k) %>
<% if val %>
- <tr>
+ <tr valign="top">
<td style="padding-right: 1em">
<%= k.to_s %>:
</td>
<%= link_to val, show_repository_blob_path(id: repo.uuid, commit: current_obj.script_version, path: 'crunch_scripts/'+current_obj.script) %>
<% elsif repo and k == :script_version %>
<%= link_to val, show_repository_commit_path(id: repo.uuid, commit: current_obj.script_version) %>
+ <% elsif k == :runtime_constraints and val.any? %>
+ <%= render partial: 'work_units/show_table_data', locals: {id: current_obj.uuid, name: k, data_map: val} %>
+ <% elsif k.to_s.end_with? 'uuid' %>
+ <%= link_to_arvados_object_if_readable(val, val, friendly_name: true) %>
<% else %>
<%= val %>
<% end %>
</tr>
<% end %>
<% end %>
+
+ <%
+ mounts = current_obj.send(:mounts) if current_obj.respond_to?(:mounts)
+ mount_wf = mounts.andand[:"/var/lib/cwl/workflow.json"]
+ mount_wf = mount_wf[5..-1] if mount_wf.andand.is_a?(String) and mount_wf.start_with?('keep:')
+ mount_wf_cls = resource_class_for_uuid(mount_wf) if mount_wf
+ %>
+ <tr>
+ <% if mount_wf_cls == Collection %>
+ <td style="padding-right: 1em">
+ workflow.json:
+ </td>
+ <td>
+ <%= link_to_if_arvados_object mount_wf, friendly_name: true %>
+ </td>
+ <% end %>
+ </tr>
+
<% if current_obj.runtime_constraints.andand[:docker_image] and current_obj.docker_image %>
<tr>
<td style="padding-right: 1em">
<% end %>
</table>
</div>
+
+ <div class="col-md-12">
+ <table style="width:100%;">
+ <col width="15%" />
+ <col width="85%" />
+ <% [:command].each do |k| %>
+ <% val = current_obj.send(k) if current_obj.respond_to?(k) %>
+ <% if val %>
+ <tr>
+ <td valign="top">
+ <%= k.to_s %>:
+ </td>
+ <td>
+ <% if k == :command %>
+ <div style="max-height:200px; overflow-y:auto;">
+ <%=val%>
+ </div>
+ <% else %>
+ <%= val %>
+ <% end %>
+ </td>
+ </tr>
+ <% end %>
+ <% end %>
+
+ <%
+ mounts = current_obj.send(:mounts) if current_obj.respond_to?(:mounts)
+ input_obj = mounts.andand[:"/var/lib/cwl/cwl.input.json"].andand[:content]
+ mnt_inputs = JSON.pretty_generate(input_obj) if input_obj
+ %>
+ <% if mnt_inputs %>
+ <tr>
+ <td valign="top">
+ cwl.input.json:
+ </td>
+ <td>
+ <div style="max-height:200px; overflow:auto;">
+ <% mnt_inputs.each_line do |l| %>
+ <% text_part = l %>
+ <% match = l.match /(.*)(\"keep:.*?\")/ %>
+ <% if match and match.size == 3 %>
+ <% text_part = match[1] %>
+ <% loc_part = match[2][6..-2] %>
+ <% end %>
+ <span style="white-space: pre-wrap; margin: none;"><%= text_part %><%= if loc_part then link_to_arvados_object_if_readable(loc_part, loc_part, friendly_name: true) end %> <% if loc_part then %> <br/> <% end %></span>
+ <% end %>
+ </div>
+ </td>
+ </tr>
+ <% end %>
+ </table>
+ </div>
+
</div>
<% if current_obj.parameters and !current_obj.parameters.empty? %>