Merge branch '15942-cancel-unsatisfiable'

[arvados.git] / apps / workbench / app / helpers / provenance_helper.rb

diff --git a/apps/workbench/app/helpers/provenance_helper.rb b/apps/workbench/app/helpers/provenance_helper.rb
index 89d9ee6ceb2ddefebc499aa9f4ba0d5bac570172..cef5cc7ee816db5e906537e6da643b33223466f7 100644 (file)
--- a/apps/workbench/app/helpers/provenance_helper.rb
+++ b/apps/workbench/app/helpers/provenance_helper.rb
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: AGPL-3.0
+
 module ProvenanceHelper
 
   class GenerateGraph
@@ -37,9 +41,15 @@ module ProvenanceHelper
           return "\"#{uuid}\" [label=\"(empty collection)\"];\n"
         end
 
-        href = url_for ({:controller => Collection.to_s.tableize,
-                          :action => :show,
-                          :id => uuid.to_s })
+        if describe_opts[:col_uuid]
+          href = url_for ({:controller => Collection.to_s.tableize,
+                           :action => :show,
+                           :id => describe_opts[:col_uuid].to_s })
+        else
+          href = url_for ({:controller => Collection.to_s.tableize,
+                           :action => :show,
+                           :id => uuid.to_s })
+        end
 
         return "\"#{uuid}\" [label=\"#{encode_quotes(describe_opts[:label] || (@pdata[uuid] and @pdata[uuid][:name]) || uuid)}\",shape=box,href=\"#{href}\",#{bgcolor}];\n"
       else
@@ -133,7 +143,87 @@ module ProvenanceHelper
         gr += edge(uuid, job[:output], {label: "output" })
       end
 
-      gr += edge(uuid, job[:log], {label: "log"}) if job[:log] and !edge_opts[:no_log]
+      if job[:log] and !edge_opts[:no_log]
+        gr += describe_node(job[:log])
+        gr += edge(uuid, job[:log], {label: "log"})
+      end
+
+      gr
+    end
+
+    def cr_edges cont, edge_opts={}
+      uuid = cont[:uuid]
+      gr = ""
+
+      gr += describe_node(cont[:uuid], {href: {controller: 'container_requests',
+                                             id: cont[:uuid]},
+                                        shape: 'oval',
+                                        label: cont[:name]})
+
+      ProvenanceHelper::find_collections cont[:mounts] do |collection_hash, collection_uuid, key|
+        if @opts[:pdh_to_uuid] and @opts[:pdh_to_uuid][collection_hash]
+          collection_uuid = @opts[:pdh_to_uuid][collection_hash].uuid
+          collection_hash = nil
+        end
+        if collection_uuid and @pdata[collection_uuid]
+          gr += describe_node(collection_uuid)
+          gr += edge(collection_uuid, uuid, {:label => key})
+        elsif collection_hash and @pdata[collection_hash]
+          gr += describe_node(collection_hash)
+          gr += edge(collection_hash, uuid, {:label => key})
+        end
+      end
+
+      if cont[:container_image] and !@opts[:no_docker] and @pdata[cont[:container_image]]
+        gr += describe_node(cont[:container_image], {label: cont[:container_image]})
+        gr += edge(cont[:container_image], uuid, {label: "docker_image"})
+      end
+
+      if cont[:output_uuid] and !edge_opts[:no_output] and @pdata[cont[:output_uuid]]
+        gr += describe_node(cont[:output_uuid])
+        gr += edge(uuid, cont[:output_uuid], {label: "output" })
+      end
+
+      if cont[:log_uuid] and !edge_opts[:no_log] and @pdata[cont[:log_uuid]]
+        gr += describe_node(cont[:log_uuid])
+        gr += edge(uuid, cont[:log_uuid], {label: "log"})
+      end
+
+      gr
+    end
+
+    def container_edges cont, edge_opts={}
+      uuid = cont[:uuid]
+      gr = ""
+
+      gr += describe_node(cont[:uuid], {href: {controller: 'containers',
+                                             id: cont[:uuid]},
+                                      shape: 'oval'})
+
+      ProvenanceHelper::find_collections cont[:mounts] do |collection_hash, collection_uuid, key|
+        if collection_uuid and @pdata[collection_uuid]
+          gr += describe_node(collection_uuid)
+          gr += edge(collection_uuid, uuid, {:label => key})
+        elsif collection_hash and @pdata[collection_hash]
+          gr += describe_node(collection_hash)
+          gr += edge(collection_hash, uuid, {:label => key})
+        end
+      end
+
+      if cont[:container_image] and !@opts[:no_docker] and @pdata[cont[:container_image]]
+        gr += describe_node(cont[:container_image], {label: cont[:container_image]})
+        gr += edge(cont[:container_image], uuid, {label: "docker_image"})
+      end
+
+      if cont[:output] and !edge_opts[:no_output] and @pdata[cont[:output]]
+        gr += describe_node(cont[:output])
+        gr += edge(uuid, cont[:output], {label: "output" })
+      end
+
+      if cont[:log] and !edge_opts[:no_log] and @pdata[cont[:log]]
+        gr += describe_node(cont[:log])
+        gr += edge(uuid, cont[:log], {label: "log"})
+      end
 
       gr
     end
@@ -181,6 +271,12 @@ module ProvenanceHelper
         if rsc == Job
           job = @pdata[uuid]
           gr += job_edges job if job
+        elsif rsc == ContainerRequest
+          cr = @pdata[uuid]
+          gr += cr_edges cr if cr
+        elsif rsc == Container
+          cr = @pdata[uuid]
+          gr += container_edges cr if cr
         end
       end
 
@@ -218,7 +314,7 @@ module ProvenanceHelper
 
         label = "#{v[0][:script]}"
 
-        if label == "run-command"
+        if label == "run-command" and v[0][:script_parameters][:command].is_a? Array
           label = v[0][:script_parameters][:command].join(' ')
         end
 
@@ -234,7 +330,7 @@ module ProvenanceHelper
     end
 
     def encode_quotes value
-      value.andand.to_s.gsub("\"", "\\\"").gsub("\n", "\\n")
+      value.to_s.gsub("\"", "\\\"").gsub("\n", "\\n")
     end
   end
 
@@ -255,9 +351,8 @@ module ProvenanceHelper
 node [fontsize=10,fontname=\"Helvetica,Arial,sans-serif\"];
 edge [fontsize=10,fontname=\"Helvetica,Arial,sans-serif\"];
 """
-
-    if opts[:direction] == :bottom_up
-      gr += "edge [dir=back];"
+    if ["LR", "RL"].include? opts[:direction]
+      gr += "rankdir=#{opts[:direction]};"
     end
 
     begin
@@ -301,7 +396,9 @@ edge [fontsize=10,fontname=\"Helvetica,Arial,sans-serif\"];
     svg = svg.sub(/<svg /, "<svg id=\"#{svgId}\" ")
   end
 
-  # returns hash, uuid
+  # yields hash, uuid
+  # Position indicates whether it is a content hash or arvados uuid.
+  # One will hold a value, the other will always be nil.
   def self.find_collections(sp, key=nil, &b)
     case sp
     when ArvadosBase
@@ -324,4 +421,17 @@ edge [fontsize=10,fontname=\"Helvetica,Arial,sans-serif\"];
       end
     end
   end
+
+  def self.cr_input_pdhs cr
+    pdhs = []
+    input_obj = cr[:mounts].andand[:"/var/lib/cwl/cwl.input.json"].andand[:content] || cr[:mounts]
+    if input_obj
+      find_collections input_obj do |col_hash, col_uuid, key|
+        if col_hash
+          pdhs << col_hash
+        end
+      end
+    end
+    pdhs
+  end
 end