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Merge pull request #1 from arvados/master
[arvados.git]
/
sdk
/
cwl
/
arvados_cwl
/
arvworkflow.py
diff --git
a/sdk/cwl/arvados_cwl/arvworkflow.py
b/sdk/cwl/arvados_cwl/arvworkflow.py
index c6bcd04776920186d9973bdf662c1fe060b9b8c2..604ad39de78877b96121fae730eb12ea0da080d6 100644
(file)
--- a/
sdk/cwl/arvados_cwl/arvworkflow.py
+++ b/
sdk/cwl/arvados_cwl/arvworkflow.py
@@
-295,6
+295,12
@@
class ArvadosWorkflow(Workflow):
self.loadingContext.metadata = self.loadingContext.metadata.copy()
self.loadingContext.metadata["http://commonwl.org/cwltool#original_cwlVersion"] = "v1.0"
self.loadingContext.metadata = self.loadingContext.metadata.copy()
self.loadingContext.metadata["http://commonwl.org/cwltool#original_cwlVersion"] = "v1.0"
+ if len(job_res_reqs) == 1:
+ # RAM request needs to be at least 128 MiB or the workflow
+ # runner itself won't run reliably.
+ if job_res_reqs[0].get("ramMin", 1024) < 128:
+ job_res_reqs[0]["ramMin"] = 128
+
wf_runner = cmap({
"class": "CommandLineTool",
"baseCommand": "cwltool",
wf_runner = cmap({
"class": "CommandLineTool",
"baseCommand": "cwltool",