Merge branch '17785-federated-token-regression' into main. Closes #17785

[arvados.git] / sdk / python / arvados / commands / put.py

diff --git a/sdk/python/arvados/commands/put.py b/sdk/python/arvados/commands/put.py
index daea046a79d959f0e68d435881e8c854da57aaa1..be7cd629c98cfbac0ff36be2ce10c4de2c30cf2e 100644 (file)
--- a/sdk/python/arvados/commands/put.py
+++ b/sdk/python/arvados/commands/put.py
@@ -576,6 +576,9 @@ class ArvPutUploadJob(object):
                     files.sort()
                     for f in files:
                         filepath = os.path.join(root, f)
+                        if not os.path.isfile(filepath):
+                            self.logger.warning("Skipping non-regular file '{}'".format(filepath))
+                            continue
                         # Add its size to the total bytes count (if applicable)
                         if self.follow_links or (not os.path.islink(filepath)):
                             if self.bytes_expected is not None:
@@ -925,7 +928,7 @@ class ArvPutUploadJob(object):
             self._local_collection = arvados.collection.Collection(
                 self._state['manifest'],
                 replication_desired=self.replication_desired,
-                storage_classes_desired=(self.storage_classes or ['default']),
+                storage_classes_desired=self.storage_classes,
                 put_threads=self.put_threads,
                 api_client=self._api_client,
                 num_retries=self.num_retries)