+
+ {
+ i = 0
+ cr.ArvMountPoint = ""
+ cr.Container.RuntimeConstraints.KeepCacheRAM = 512
+ cr.Container.Mounts = map[string]arvados.Mount{
+ "/keepinp": {Kind: "collection", PortableDataHash: "59389a8f9ee9d399be35462a0f92541c+53"},
+ "/keepout": {Kind: "collection", Writable: true},
+ }
+ cr.OutputPath = "/keepout"
+
+ os.MkdirAll(realTemp+"/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53", os.ModePerm)
+ os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm)
+
+ err := cr.SetupMounts()
+ c.Check(err, IsNil)
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ sort.StringSlice(cr.Binds).Sort()
+ c.Check(cr.Binds, DeepEquals, []string{realTemp + "/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53:/keepinp:ro",
+ realTemp + "/keep1/tmp0:/keepout"})
+ cr.CleanupDirs()
+ checkEmpty()
+ }
+
+ for _, test := range []struct {
+ in interface{}
+ out string
+ }{
+ {in: "foo", out: `"foo"`},
+ {in: nil, out: `null`},
+ {in: map[string]int{"foo": 123}, out: `{"foo":123}`},
+ } {
+ i = 0
+ cr.ArvMountPoint = ""
+ cr.Container.Mounts = map[string]arvados.Mount{
+ "/mnt/test.json": {Kind: "json", Content: test.in},
+ }
+ err := cr.SetupMounts()
+ c.Check(err, IsNil)
+ sort.StringSlice(cr.Binds).Sort()
+ c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2/mountdata.json:/mnt/test.json:ro"})
+ content, err := ioutil.ReadFile(realTemp + "/2/mountdata.json")
+ c.Check(err, IsNil)
+ c.Check(content, DeepEquals, []byte(test.out))
+ cr.CleanupDirs()
+ checkEmpty()
+ }
+
+ // Read-only mount points are allowed underneath output_dir mount point
+ {
+ i = 0
+ cr.ArvMountPoint = ""
+ cr.Container.Mounts = make(map[string]arvados.Mount)
+ cr.Container.Mounts = map[string]arvados.Mount{
+ "/tmp": {Kind: "tmp"},
+ "/tmp/foo": {Kind: "collection"},
+ }
+ cr.OutputPath = "/tmp"
+
+ os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm)
+
+ err := cr.SetupMounts()
+ c.Check(err, IsNil)
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/tmp", realTemp + "/keep1/tmp0:/tmp/foo:ro"})
+ cr.CleanupDirs()
+ checkEmpty()
+ }
+
+ // Writable mount points are not allowed underneath output_dir mount point
+ {
+ i = 0
+ cr.ArvMountPoint = ""
+ cr.Container.Mounts = make(map[string]arvados.Mount)
+ cr.Container.Mounts = map[string]arvados.Mount{
+ "/tmp": {Kind: "tmp"},
+ "/tmp/foo": {Kind: "collection", Writable: true},
+ }
+ cr.OutputPath = "/tmp"
+
+ err := cr.SetupMounts()
+ c.Check(err, NotNil)
+ c.Check(err, ErrorMatches, `Writable mount points are not permitted underneath the output_path.*`)
+ cr.CleanupDirs()
+ checkEmpty()
+ }
+
+ // Only mount points of kind 'collection' are allowed underneath output_dir mount point
+ {
+ i = 0
+ cr.ArvMountPoint = ""
+ cr.Container.Mounts = make(map[string]arvados.Mount)
+ cr.Container.Mounts = map[string]arvados.Mount{
+ "/tmp": {Kind: "tmp"},
+ "/tmp/foo": {Kind: "json"},
+ }
+ cr.OutputPath = "/tmp"
+
+ err := cr.SetupMounts()
+ c.Check(err, NotNil)
+ c.Check(err, ErrorMatches, `Only mount points of kind 'collection' are supported underneath the output_path.*`)
+ cr.CleanupDirs()
+ checkEmpty()
+ }
+
+ // Only mount point of kind 'collection' is allowed for stdin
+ {
+ i = 0
+ cr.ArvMountPoint = ""
+ cr.Container.Mounts = make(map[string]arvados.Mount)
+ cr.Container.Mounts = map[string]arvados.Mount{
+ "stdin": {Kind: "tmp"},
+ }
+
+ err := cr.SetupMounts()
+ c.Check(err, NotNil)
+ c.Check(err, ErrorMatches, `Unsupported mount kind 'tmp' for stdin.*`)
+ cr.CleanupDirs()
+ checkEmpty()
+ }
+}
+
+func (s *TestSuite) TestStdout(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ api, _, _ := FullRunHelper(c, helperRecord, nil, 0, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ c.Check(api.CalledWith("collection.manifest_text", "./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out\n"), NotNil)
+}
+
+// Used by the TestStdoutWithWrongPath*()
+func StdoutErrorRunHelper(c *C, record string, fn func(t *TestDockerClient)) (api *ArvTestClient, cr *ContainerRunner, err error) {
+ rec := arvados.Container{}
+ err = json.Unmarshal([]byte(record), &rec)
+ c.Check(err, IsNil)
+
+ docker := NewTestDockerClient(0)
+ docker.fn = fn
+ docker.ImageRemove(nil, hwImageId, dockertypes.ImageRemoveOptions{})
+
+ api = &ArvTestClient{Container: rec}
+ cr = NewContainerRunner(api, &KeepTestClient{}, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ am := &ArvMountCmdLine{}
+ cr.RunArvMount = am.ArvMountTest
+
+ err = cr.Run()
+ return
+}
+
+func (s *TestSuite) TestStdoutWithWrongPath(c *C) {
+ _, _, err := StdoutErrorRunHelper(c, `{
+ "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "file", "path":"/tmpa.out"} },
+ "output_path": "/tmp"
+}`, func(t *TestDockerClient) {})
+
+ c.Check(err, NotNil)
+ c.Check(strings.Contains(err.Error(), "Stdout path does not start with OutputPath"), Equals, true)
+}
+
+func (s *TestSuite) TestStdoutWithWrongKindTmp(c *C) {
+ _, _, err := StdoutErrorRunHelper(c, `{
+ "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "tmp", "path":"/tmp/a.out"} },
+ "output_path": "/tmp"
+}`, func(t *TestDockerClient) {})
+
+ c.Check(err, NotNil)
+ c.Check(strings.Contains(err.Error(), "Unsupported mount kind 'tmp' for stdout"), Equals, true)
+}
+
+func (s *TestSuite) TestStdoutWithWrongKindCollection(c *C) {
+ _, _, err := StdoutErrorRunHelper(c, `{
+ "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "collection", "path":"/tmp/a.out"} },
+ "output_path": "/tmp"
+}`, func(t *TestDockerClient) {})
+
+ c.Check(err, NotNil)
+ c.Check(strings.Contains(err.Error(), "Unsupported mount kind 'collection' for stdout"), Equals, true)
+}
+
+func (s *TestSuite) TestFullRunWithAPI(c *C) {
+ os.Setenv("ARVADOS_API_HOST", "test.arvados.org")
+ defer os.Unsetenv("ARVADOS_API_HOST")
+ api, _, _ := FullRunHelper(c, `{
+ "command": ["/bin/sh", "-c", "echo $ARVADOS_API_HOST"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {"API": true}
+}`, nil, 0, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, t.env[1][17:]+"\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "test.arvados.org\n"), Equals, true)
+ c.Check(api.CalledWith("container.output", "d41d8cd98f00b204e9800998ecf8427e+0"), NotNil)
+}
+
+func (s *TestSuite) TestFullRunSetOutput(c *C) {
+ os.Setenv("ARVADOS_API_HOST", "test.arvados.org")
+ defer os.Unsetenv("ARVADOS_API_HOST")
+ api, _, _ := FullRunHelper(c, `{
+ "command": ["/bin/sh", "-c", "echo $ARVADOS_API_HOST"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {"API": true}
+}`, nil, 0, func(t *TestDockerClient) {
+ t.api.Container.Output = "d4ab34d3d4f8a72f5c4973051ae69fab+122"
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ c.Check(api.CalledWith("container.output", "d4ab34d3d4f8a72f5c4973051ae69fab+122"), NotNil)
+}
+
+func (s *TestSuite) TestStdoutWithExcludeFromOutputMountPointUnderOutputDir(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"},
+ "/tmp/foo": {"kind": "collection",
+ "portable_data_hash": "a3e8f74c6f101eae01fa08bfb4e49b3a+54",
+ "exclude_from_output": true
+ },
+ "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{"a3e8f74c6f101eae01fa08bfb4e49b3a+54"}
+
+ api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ c.Check(api.CalledWith("collection.manifest_text", "./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out\n"), NotNil)
+}
+
+func (s *TestSuite) TestStdoutWithMultipleMountPointsUnderOutputDir(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"},
+ "/tmp/foo/bar": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/file2_in_main.txt"},
+ "/tmp/foo/sub1": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/subdir1"},
+ "/tmp/foo/sub1file2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/subdir1/file2_in_subdir1.txt"},
+ "/tmp/foo/baz/sub2file2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/subdir1/subdir2/file2_in_subdir2.txt"},
+ "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{
+ "a0def87f80dd594d4675809e83bd4f15+367/file2_in_main.txt",
+ "a0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt",
+ "a0def87f80dd594d4675809e83bd4f15+367/subdir1/subdir2/file2_in_subdir2.txt",
+ }
+
+ api, runner, realtemp := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(runner.Binds, DeepEquals, []string{realtemp + "/2:/tmp",
+ realtemp + "/keep1/by_id/a0def87f80dd594d4675809e83bd4f15+367/file2_in_main.txt:/tmp/foo/bar:ro",
+ realtemp + "/keep1/by_id/a0def87f80dd594d4675809e83bd4f15+367/subdir1/subdir2/file2_in_subdir2.txt:/tmp/foo/baz/sub2file2:ro",
+ realtemp + "/keep1/by_id/a0def87f80dd594d4675809e83bd4f15+367/subdir1:/tmp/foo/sub1:ro",
+ realtemp + "/keep1/by_id/a0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt:/tmp/foo/sub1file2:ro",
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ for _, v := range api.Content {
+ if v["collection"] != nil {
+ c.Check(v["ensure_unique_name"], Equals, true)
+ collection := v["collection"].(arvadosclient.Dict)
+ if strings.Index(collection["name"].(string), "output") == 0 {
+ manifest := collection["manifest_text"].(string)
+
+ c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out
+./foo 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 9:18:bar 9:18:sub1file2
+./foo/baz 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 9:18:sub2file2
+./foo/sub1 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt
+./foo/sub1/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt
+`)
+ }
+ }
+ }
+}
+
+func (s *TestSuite) TestStdoutWithMountPointsUnderOutputDirDenormalizedManifest(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"},
+ "/tmp/foo/bar": {"kind": "collection", "portable_data_hash": "b0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt"},
+ "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{
+ "b0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt",
+ }
+
+ api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ for _, v := range api.Content {
+ if v["collection"] != nil {
+ collection := v["collection"].(arvadosclient.Dict)
+ if strings.Index(collection["name"].(string), "output") == 0 {
+ manifest := collection["manifest_text"].(string)
+
+ c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out
+./foo 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 10:17:bar
+`)
+ }
+ }
+ }
+}
+
+func (s *TestSuite) TestOutputSymlinkToInput(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"},
+ "/keep/foo/sub1file2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path": "/subdir1/file2_in_subdir1.txt"},
+ "/keep/foo2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{
+ "a0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt",
+ }
+
+ api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ os.Symlink("/keep/foo/sub1file2", t.realTemp+"/2/baz")
+ os.Symlink("/keep/foo2/subdir1/file2_in_subdir1.txt", t.realTemp+"/2/baz2")
+ os.Symlink("/keep/foo2/subdir1", t.realTemp+"/2/baz3")
+ os.Mkdir(t.realTemp+"/2/baz4", 0700)
+ os.Symlink("/keep/foo2/subdir1/file2_in_subdir1.txt", t.realTemp+"/2/baz4/baz5")
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ for _, v := range api.Content {
+ if v["collection"] != nil {
+ collection := v["collection"].(arvadosclient.Dict)
+ if strings.Index(collection["name"].(string), "output") == 0 {
+ manifest := collection["manifest_text"].(string)
+ c.Check(manifest, Equals, `. 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 9:18:baz 9:18:baz2
+./baz3 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt
+./baz3/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt
+./baz4 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 9:18:baz5
+`)
+ }
+ }
+ }
+}
+
+func (s *TestSuite) TestOutputError(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{}
+
+ api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ os.Symlink("/etc/hosts", t.realTemp+"/2/baz")
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.state", "Cancelled"), NotNil)
+}
+
+func (s *TestSuite) TestStdinCollectionMountPoint(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"},
+ "stdin": {"kind": "collection", "portable_data_hash": "b0def87f80dd594d4675809e83bd4f15+367", "path": "/file1_in_main.txt"},
+ "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{
+ "b0def87f80dd594d4675809e83bd4f15+367/file1_in_main.txt",
+ }
+
+ api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ for _, v := range api.Content {
+ if v["collection"] != nil {
+ collection := v["collection"].(arvadosclient.Dict)
+ if strings.Index(collection["name"].(string), "output") == 0 {
+ manifest := collection["manifest_text"].(string)
+ c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out
+`)
+ }
+ }
+ }
+}
+
+func (s *TestSuite) TestStdinJsonMountPoint(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"},
+ "stdin": {"kind": "json", "content": "foo"},
+ "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ api, _, _ := FullRunHelper(c, helperRecord, nil, 0, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ for _, v := range api.Content {
+ if v["collection"] != nil {
+ collection := v["collection"].(arvadosclient.Dict)
+ if strings.Index(collection["name"].(string), "output") == 0 {
+ manifest := collection["manifest_text"].(string)
+ c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out
+`)
+ }
+ }
+ }
+}
+
+func (s *TestSuite) TestStderrMount(c *C) {
+ api, _, _ := FullRunHelper(c, `{
+ "command": ["/bin/sh", "-c", "echo hello;exit 1"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"},
+ "stdout": {"kind": "file", "path": "/tmp/a/out.txt"},
+ "stderr": {"kind": "file", "path": "/tmp/b/err.txt"}},
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+}`, nil, 1, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, "hello\n"))
+ t.logWriter.Write(dockerLog(2, "oops\n"))
+ t.logWriter.Close()
+ })
+
+ final := api.CalledWith("container.state", "Complete")
+ c.Assert(final, NotNil)
+ c.Check(final["container"].(arvadosclient.Dict)["exit_code"], Equals, 1)
+ c.Check(final["container"].(arvadosclient.Dict)["log"], NotNil)
+
+ c.Check(api.CalledWith("collection.manifest_text", "./a b1946ac92492d2347c6235b4d2611184+6 0:6:out.txt\n./b 38af5c54926b620264ab1501150cf189+5 0:5:err.txt\n"), NotNil)