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11807: Migrate old records in jobs table from YAML to JSON.
[arvados.git]
/
doc
/
_includes
/
_tutorial_bwa_sortsam_pipeline.liquid
diff --git
a/doc/_includes/_tutorial_bwa_sortsam_pipeline.liquid
b/doc/_includes/_tutorial_bwa_sortsam_pipeline.liquid
index 413e51f9c057565647f829506506b4fd58aa7c8d..8a9e52abe7889e986dc1b9002f3bffc313219294 100644
(file)
--- a/
doc/_includes/_tutorial_bwa_sortsam_pipeline.liquid
+++ b/
doc/_includes/_tutorial_bwa_sortsam_pipeline.liquid
@@
-12,7
+12,7
@@
"-t",
"$(node.cores)",
"-R",
"-t",
"$(node.cores)",
"-R",
- "@RG\\
tID:group_id\\tPL:illumina
\\tSM:sample_id",
+ "@RG\\
\tID:group_id\\\tPL:illumina\
\\tSM:sample_id",
"$(glob $(dir $(reference_collection))/*.fasta)",
"$(glob $(dir $(sample))/*_1.fastq)",
"$(glob $(dir $(sample))/*_2.fastq)"
"$(glob $(dir $(reference_collection))/*.fasta)",
"$(glob $(dir $(sample))/*_1.fastq)",
"$(glob $(dir $(sample))/*_2.fastq)"