gr
end
+ def cr_edges cont, edge_opts={}
+ uuid = cont[:uuid]
+ gr = ""
+
+ gr += describe_node(cont[:uuid], {href: {controller: 'container_requests',
+ id: cont[:uuid]},
+ shape: 'oval',
+ label: cont[:name]})
+
+ ProvenanceHelper::find_collections cont[:mounts] do |collection_hash, collection_uuid, key|
+ if @opts[:pdh_to_uuid] and @opts[:pdh_to_uuid][collection_hash]
+ collection_uuid = @opts[:pdh_to_uuid][collection_hash].uuid
+ collection_hash = nil
+ end
+ if collection_uuid and @pdata[collection_uuid]
+ gr += describe_node(collection_uuid)
+ gr += edge(collection_uuid, uuid, {:label => key})
+ elsif collection_hash and @pdata[collection_hash]
+ gr += describe_node(collection_hash)
+ gr += edge(collection_hash, uuid, {:label => key})
+ end
+ end
+
+ if cont[:container_image] and !@opts[:no_docker] and @pdata[cont[:container_image]]
+ gr += describe_node(cont[:container_image], {label: cont[:container_image]})
+ gr += edge(cont[:container_image], uuid, {label: "docker_image"})
+ end
+
+ if cont[:output_uuid] and !edge_opts[:no_output] and @pdata[cont[:output_uuid]]
+ gr += describe_node(cont[:output_uuid])
+ gr += edge(uuid, cont[:output_uuid], {label: "output" })
+ end
+
+ if cont[:log_uuid] and !edge_opts[:no_log] and @pdata[cont[:log_uuid]]
+ gr += describe_node(cont[:log_uuid])
+ gr += edge(uuid, cont[:log_uuid], {label: "log"})
+ end
+
+ gr
+ end
+
+ def container_edges cont, edge_opts={}
+ uuid = cont[:uuid]
+ gr = ""
+
+ gr += describe_node(cont[:uuid], {href: {controller: 'containers',
+ id: cont[:uuid]},
+ shape: 'oval'})
+
+ ProvenanceHelper::find_collections cont[:mounts] do |collection_hash, collection_uuid, key|
+ if collection_uuid and @pdata[collection_uuid]
+ gr += describe_node(collection_uuid)
+ gr += edge(collection_uuid, uuid, {:label => key})
+ elsif collection_hash and @pdata[collection_hash]
+ gr += describe_node(collection_hash)
+ gr += edge(collection_hash, uuid, {:label => key})
+ end
+ end
+
+ if cont[:container_image] and !@opts[:no_docker] and @pdata[cont[:container_image]]
+ gr += describe_node(cont[:container_image], {label: cont[:container_image]})
+ gr += edge(cont[:container_image], uuid, {label: "docker_image"})
+ end
+
+ if cont[:output] and !edge_opts[:no_output] and @pdata[cont[:output]]
+ gr += describe_node(cont[:output])
+ gr += edge(uuid, cont[:output], {label: "output" })
+ end
+
+ if cont[:log] and !edge_opts[:no_log] and @pdata[cont[:log]]
+ gr += describe_node(cont[:log])
+ gr += edge(uuid, cont[:log], {label: "log"})
+ end
+
+ gr
+ end
+
def generate_provenance_edges(uuid)
gr = ""
m = GenerateGraph::collection_uuid(uuid)
gr += job_edges job if job
elsif rsc == ContainerRequest
cr = @pdata[uuid]
- if cr
- gr += describe_node(cr[:uuid], {href: {controller: 'container_requests',
- id: cr[:uuid]},
- label: cr[:name],
- shape: 'oval'})
- # Connect child CRs
- children = @opts[:cr_children_of].andand[cr[:uuid]]
- if children
- children.each do |child|
- gr += edge(child[:uuid], cr[:uuid], {label: 'child'})
- end
- end
- # Output collection node
- if cr[:output_uuid] and @opts[:output_collections][cr[:output_uuid]]
- c = @opts[:output_collections][cr[:output_uuid]]
- gr += describe_node(c[:portable_data_hash],
- {
- label: c[:name],
- col_uuid: c[:uuid],
- })
- gr += edge(cr[:uuid],
- c[:portable_data_hash],
- {label: 'output'})
- end
- # Input collection nodes
- output_pdhs = @opts[:output_collections].values.collect{|c|
- c[:portable_data_hash]}
- ProvenanceHelper::cr_input_pdhs(cr).each do |pdh|
- if not output_pdhs.include?(pdh)
- # Search for collections on the same project first
- cols = @opts[:input_collections][pdh].andand.select{|c|
- c[:owner_uuid] == cr[:owner_uuid]}
- if not cols or cols.empty?
- # Search for any collection with this PDH
- cols = @opts[:input_collections][pdh]
- end
- names = cols.collect{|x| x[:name]}.uniq
- input_name = names.first
- if names.length > 1
- input_name += " + #{names.length - 1} more"
- end
- gr += describe_node(pdh, {label: input_name})
- end
- gr += edge(pdh, cr[:uuid], {label: 'input'})
- end
- end
+ gr += cr_edges cr if cr
+ elsif rsc == Container
+ cr = @pdata[uuid]
+ gr += container_edges cr if cr
end
end
node [fontsize=10,fontname=\"Helvetica,Arial,sans-serif\"];
edge [fontsize=10,fontname=\"Helvetica,Arial,sans-serif\"];
"""
-
- if opts[:direction] == :bottom_up
- gr += "edge [dir=back];"
+ if ["LR", "RL"].include? opts[:direction]
+ gr += "rankdir=#{opts[:direction]};"
end
begin