end
def render_markup(markup)
- raw RedCloth.new(markup.to_s).to_html(:refs_arvados, :textile) if markup
+ allowed_tags = Rails::Html::Sanitizer.white_list_sanitizer.allowed_tags + %w(table tbody th tr td col colgroup caption thead tfoot)
+ sanitize(raw(RedCloth.new(markup.to_s).to_html(:refs_arvados, :textile)), tags: allowed_tags) if markup
end
def human_readable_bytes_html(n)
end
return h(n)
- #raw = n.to_s
- #cooked = ''
- #while raw.length > 3
- # cooked = ',' + raw[-3..-1] + cooked
- # raw = raw[0..-4]
- #end
- #cooked = raw + cooked
end
def resource_class_for_uuid(attrvalue, opts={})
lt
end
- def get_cwl_inputs(workflow)
- if workflow[:inputs]
- return workflow[:inputs]
+ def get_cwl_main(workflow)
+ if workflow[:"$graph"].nil?
+ return workflow
else
workflow[:"$graph"].each do |tool|
if tool[:id] == "#main"
- return tool[:inputs]
+ return tool
end
end
end
end
+ def get_cwl_inputs(workflow)
+ get_cwl_main(workflow)[:inputs]
+ end
+
+
def cwl_shortname(id)
if id[0] == "#"
id = id[1..-1]
end
# Keep locators are expected to be of the form \"...<pdh/file_path>\"
- JSON_KEEP_LOCATOR_REGEXP = /(.*)(([0-9a-f]{32}\+\d+)(.*)\"(.*))/
+ JSON_KEEP_LOCATOR_REGEXP = /([0-9a-f]{32}\+\d+[^'"]*?)(?=['"]|\z|$)/
def keep_locator_in_json str
- JSON_KEEP_LOCATOR_REGEXP.match str
+ # Return a list of all matches
+ str.scan(JSON_KEEP_LOCATOR_REGEXP).flatten
end
private