# Add the arvados signing key
cat /tmp/1078ECD7.asc | $SUDO apt-key add -
-# Add the debian keys
-wait_for_apt_locks && $SUDO DEBIAN_FRONTEND=noninteractive apt-get install --yes debian-keyring debian-archive-keyring
+# Add the debian keys (but don't abort if we can't find them, e.g. on Ubuntu where we don't need them)
+wait_for_apt_locks && $SUDO DEBIAN_FRONTEND=noninteractive apt-get install --yes debian-keyring debian-archive-keyring 2>/dev/null || true
# Fix locale
$SUDO /bin/sed -ri 's/# en_US.UTF-8 UTF-8/en_US.UTF-8 UTF-8/' /etc/locale.gen
libcurl4-openssl-dev \
lvm2 \
cryptsetup \
- xfsprogs \
- squashfs-tools
+ xfsprogs
# Install the Arvados packages we need
wait_for_apt_locks && $SUDO DEBIAN_FRONTEND=noninteractive apt-get -qq --yes install \
dockerversion=5:20.10.13~3-0
if [[ "$DIST" =~ ^debian ]]; then
family="debian"
- if [ "$DIST" == "debian10" ]; then
- distro="buster"
- elif [ "$DIST" == "debian11" ]; then
+ if [ "$DIST" == "debian11" ]; then
distro="bullseye"
+ elif [ "$DIST" == "debian12" ]; then
+ distro="bookworm"
fi
elif [[ "$DIST" =~ ^ubuntu ]]; then
family="ubuntu"
- if [ "$DIST" == "ubuntu1804" ]; then
- distro="bionic"
- elif [ "$DIST" == "ubuntu2004" ]; then
+ if [ "$DIST" == "ubuntu2004" ]; then
distro="focal"
+ elif [ "$DIST" == "ubuntu2204" ]; then
+ distro="jammy"
fi
else
echo "Unsupported distribution $DIST"
# and the BootProbeCommand might be "docker ps -q"
$SUDO systemctl disable docker
-# Get Go and build singularity
-goversion=1.17.1
-mkdir -p /var/lib/arvados
-rm -rf /var/lib/arvados/go/
-curl -s https://storage.googleapis.com/golang/go${goversion}.linux-amd64.tar.gz | tar -C /var/lib/arvados -xzf -
-ln -sf /var/lib/arvados/go/bin/* /usr/local/bin/
-
-singularityversion=3.7.4
-curl -Ls https://github.com/sylabs/singularity/archive/refs/tags/v${singularityversion}.tar.gz | tar -C /var/lib/arvados -xzf -
-cd /var/lib/arvados/singularity-${singularityversion}
-
-# build dependencies for singularity
-wait_for_apt_locks && $SUDO DEBIAN_FRONTEND=noninteractive apt-get -qq --yes install \
- make build-essential libssl-dev uuid-dev cryptsetup
-
-echo $singularityversion > VERSION
-./mconfig --prefix=/var/lib/arvados
-make -C ./builddir
-make -C ./builddir install
-ln -sf /var/lib/arvados/bin/* /usr/local/bin/
-
-# set `mksquashfs mem` in the singularity config file if it is configured
-if [ "$MKSQUASHFS_MEM" != "" ]; then
- echo "mksquashfs mem = ${MKSQUASHFS_MEM}" >> /var/lib/arvados/etc/singularity/singularity.conf
-fi
-
-# Print singularity version installed
-singularity --version
-
# Remove unattended-upgrades if it is installed
wait_for_apt_locks && $SUDO DEBIAN_FRONTEND=noninteractive apt-get -qq --yes remove unattended-upgrades --purge
$SUDO mkdir -p /etc/arvados/docker-cleaner
$SUDO echo -e "{\n \"Quota\": \"10G\",\n \"RemoveStoppedContainers\": \"always\"\n}" > /etc/arvados/docker-cleaner/docker-cleaner.json
-# Enable cgroup accounting
-$SUDO sed -i 's/GRUB_CMDLINE_LINUX=""/GRUB_CMDLINE_LINUX="cgroup_enable=memory swapaccount=1"/g' /etc/default/grub
+# Enable cgroup accounting (forcing cgroups v1)
+$SUDO echo 'GRUB_CMDLINE_LINUX="$GRUB_CMDLINE_LINUX cgroup_enable=memory swapaccount=1 systemd.unified_cgroup_hierarchy=0"' >> /etc/default/grub
$SUDO update-grub
# Make sure user_allow_other is set in fuse.conf
unzip -q /tmp/awscliv2.zip -d /tmp && $SUDO /tmp/aws/install
# Pinned to v2.4.5 because we apply a patch below
#export EBS_AUTOSCALE_VERSION=$(curl --silent "https://api.github.com/repos/awslabs/amazon-ebs-autoscale/releases/latest" | jq -r .tag_name)
- export EBS_AUTOSCALE_VERSION="v2.4.5"
- cd /opt && $SUDO git clone https://github.com/awslabs/amazon-ebs-autoscale.git
+ export EBS_AUTOSCALE_VERSION="ee323f0751c2b6f733692e805b51b9bf3c251bac"
+ cd /opt && $SUDO git clone https://github.com/arvados/amazon-ebs-autoscale.git
cd /opt/amazon-ebs-autoscale && $SUDO git checkout $EBS_AUTOSCALE_VERSION
- $SUDO patch -p1 < /tmp/create-ebs-volume-nvme.patch
-
- # This script really requires bash and the shebang line is wrong
- $SUDO sed -i 's|^#!/bin/sh|#!/bin/bash|' /opt/amazon-ebs-autoscale/bin/ebs-autoscale
# Set up the cloud-init script that makes use of the AWS EBS autoscaler
$SUDO mv /tmp/usr-local-bin-ensure-encrypted-partitions-aws-ebs-autoscale.sh /usr/local/bin/ensure-encrypted-partitions.sh
# Install CUDA
$SUDO apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/$DIST/x86_64/7fa2af80.pub
+ $SUDO apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/$DIST/x86_64/3bf863cc.pub
$SUDO apt-get -y install software-properties-common
$SUDO add-apt-repository "deb https://developer.download.nvidia.com/compute/cuda/repos/$DIST/x86_64/ /"
- # Ubuntu 18.04's add-apt-repository does not understand 'contrib'
- $SUDO add-apt-repository contrib || true
+ $SUDO add-apt-repository contrib
$SUDO apt-get update
$SUDO apt-get -y install cuda
$SUDO systemctl disable nvidia-persistenced.service
fi
+# Get Go and build singularity
+mkdir -p /var/lib/arvados
+rm -rf /var/lib/arvados/go/
+curl -s https://storage.googleapis.com/golang/go${GOVERSION}.linux-amd64.tar.gz | tar -C /var/lib/arvados -xzf -
+ln -sf /var/lib/arvados/go/bin/* /usr/local/bin/
+
+singularityversion=3.10.4
+cd /var/lib/arvados
+git clone --recurse-submodules https://github.com/sylabs/singularity
+cd singularity
+git checkout v${singularityversion}
+
+# build dependencies for singularity
+wait_for_apt_locks && $SUDO DEBIAN_FRONTEND=noninteractive apt-get -qq --yes install \
+ make build-essential libssl-dev uuid-dev cryptsetup \
+ squashfs-tools libglib2.0-dev libseccomp-dev
+
+
+echo $singularityversion > VERSION
+./mconfig --prefix=/var/lib/arvados
+make -C ./builddir
+make -C ./builddir install
+ln -sf /var/lib/arvados/bin/* /usr/local/bin/
+
+# set `mksquashfs mem` in the singularity config file if it is configured
+if [ "$MKSQUASHFS_MEM" != "" ]; then
+ echo "mksquashfs mem = ${MKSQUASHFS_MEM}" >> /var/lib/arvados/etc/singularity/singularity.conf
+fi
+
+# Print singularity version installed
+singularity --version
+
$SUDO apt-get clean