class ApplicationController < ActionController::Base
+ include ArvadosApiClientHelper
+
respond_to :html, :json, :js
protect_from_forgery
ERROR_ACTIONS = [:render_error, :render_not_found]
around_filter :thread_clear
- around_filter(:thread_with_mandatory_api_token,
- except: [:index, :show] + ERROR_ACTIONS)
+ around_filter :thread_with_mandatory_api_token, except: ERROR_ACTIONS
around_filter :thread_with_optional_api_token
before_filter :check_user_agreements, except: ERROR_ACTIONS
before_filter :check_user_notifications, except: ERROR_ACTIONS
- around_filter :using_reader_tokens, only: [:index, :show]
before_filter :find_object_by_uuid, except: [:index] + ERROR_ACTIONS
- before_filter :check_my_folders, :except => ERROR_ACTIONS
theme :select_theme
begin
end
def update
- updates = params[@object.class.to_s.underscore.singularize.to_sym]
- updates.keys.each do |attr|
+ @updates ||= params[@object.class.to_s.underscore.singularize.to_sym]
+ @updates.keys.each do |attr|
if @object.send(attr).is_a? Hash
- if updates[attr].is_a? String
- updates[attr] = Oj.load updates[attr]
+ if @updates[attr].is_a? String
+ @updates[attr] = Oj.load @updates[attr]
end
if params[:merge] || params["merge_#{attr}".to_sym]
# Merge provided Hash with current Hash, instead of
# replacing.
- updates[attr] = @object.send(attr).with_indifferent_access.
- deep_merge(updates[attr].with_indifferent_access)
+ @updates[attr] = @object.send(attr).with_indifferent_access.
+ deep_merge(@updates[attr].with_indifferent_access)
end
end
end
- if @object.update_attributes updates
+ if @object.update_attributes @updates
show
else
self.render_error status: 422
respond_to do |f|
f.html {
if request.method == 'GET'
- redirect_to $arvados_api_client.arvados_login_url(return_to: request.url)
+ redirect_to arvados_api_client.arvados_login_url(return_to: request.url)
else
flash[:error] = "Either you are not logged in, or your session has timed out. I can't automatically log you in and re-attempt this request."
redirect_to :back
false # For convenience to return from callbacks
end
- def using_reader_tokens(login_optional=false)
- if params[:reader_tokens].is_a?(Array) and params[:reader_tokens].any?
- Thread.current[:reader_tokens] = params[:reader_tokens]
- end
- begin
- yield
- rescue ArvadosApiClient::NotLoggedInException
- if login_optional
- raise
- else
- return redirect_to_login
- end
- ensure
- Thread.current[:reader_tokens] = nil
- end
- end
-
def using_specific_api_token(api_token)
start_values = {}
[:arvados_api_token, :user].each do |key|
}
}
- def check_my_folders
- @my_top_level_folders = lambda do
- @top_level_folders ||= Group.
- filter([['group_class','=','folder'],
- ['owner_uuid','=',current_user.uuid]]).
- sort_by { |x| x.name || '' }
- end
- end
-
def check_user_notifications
@notification_count = 0
@notifications = []
@notification_count = ''
end
end
+
+ helper_method :my_folders
+ def my_folders
+ return @my_folders if @my_folders
+ @my_folders = []
+ root_of = {}
+ Group.filter([['group_class','=','folder']]).each do |g|
+ root_of[g.uuid] = g.owner_uuid
+ @my_folders << g
+ end
+ done = false
+ while not done
+ done = true
+ root_of = root_of.each_with_object({}) do |(child, parent), h|
+ if root_of[parent]
+ h[child] = root_of[parent]
+ done = false
+ else
+ h[child] = parent
+ end
+ end
+ end
+ @my_folders = @my_folders.select do |g|
+ root_of[g.uuid] == current_user.uuid
+ end
+ end
+
+ # helper method to get links for given object or uuid
+ helper_method :links_for_object
+ def links_for_object object_or_uuid
+ uuid = object_or_uuid.is_a?(String) ? object_or_uuid : object_or_uuid.uuid
+ preload_links_for_objects([object_or_uuid])
+ @all_links_for[uuid]
+ end
+
+ # helper method to preload links for given objects and uuids
+ helper_method :preload_links_for_objects
+ def preload_links_for_objects objects_and_uuids
+ uuids = objects_and_uuids.collect { |x| x.is_a?(String) ? x : x.uuid }
+ @all_links_for ||= {}
+ if not uuids.select { |x| @all_links_for[x].nil? }.any?
+ # already preloaded for all of these uuids
+ return
+ end
+ uuids.each do |x|
+ @all_links_for[x] = []
+ end
+ # TODO: make sure we get every page of results from API server
+ Link.filter([['head_uuid','in',uuids]]).each do |link|
+ @all_links_for[link.head_uuid] << link
+ end
+ end
+
+ # helper method to get a certain number of objects of a specific type
+ # this can be used to replace any uses of: "dataclass.limit(n)"
+ helper_method :get_objects_of_type
+ def get_objects_of_type dataclass, size
+ # if the objects_map_for has a value for this dataclass, and the size used
+ # to retrieve those objects is greater than equal to size, return it
+ size_key = "#{dataclass}_size"
+ if @objects_map_for && @objects_map_for[dataclass] && @objects_map_for[size_key] &&
+ (@objects_map_for[size_key] >= size)
+ return @objects_map_for[dataclass]
+ end
+
+ @objects_map_for = {}
+ @objects_map_for[dataclass] = dataclass.limit(size)
+ @objects_map_for[size_key] = size
+
+ return @objects_map_for[dataclass]
+ end
+
+ # helper method to get collections for the given uuid
+ helper_method :get_collections
+ def get_collections uuid
+ preload_collections([uuid])
+ @all_collections_for[uuid]
+ end
+
+ # helper method to preload collections for the given uuids
+ helper_method :preload_collections
+ def preload_collections uuids
+ @all_collections_for ||= {}
+ if not uuids.select { |x| @all_collections_for[x].nil? }.any?
+ # already preloaded for all of these uuids
+ return
+ end
+
+ uuids.each do |x|
+ @all_collections_for[x] = []
+ end
+
+ # TODO: make sure we get every page of results from API server
+ Collection.where(uuid: uuids).each do |collection|
+ @all_collections_for[collection.uuid] << collection
+ end
+ end
+
+ # helper method to get log collections for the given log
+ helper_method :get_log_collections
+ def get_log_collections log
+ fixup = /([a-f0-9]{32}\+\d+)(\+?.*)/.match(log)
+ uuid = fixup[1]
+ preload_log_collections([uuid])
+ @all_log_collections_for[uuid]
+ end
+
+ # helper method to preload collections for the given uuids
+ helper_method :preload_log_collections
+ def preload_log_collections logs
+ uuids = []
+ logs.each do |log|
+ fixup = /([a-f0-9]{32}\+\d+)(\+?.*)/.match(log)
+ uuids << fixup[1]
+ end
+
+ @all_log_collections_for ||= {}
+ if not uuids.select { |x| @all_log_collections_for[x].nil? }.any?
+ # already preloaded for all of these uuids
+ return
+ end
+
+ uuids.each do |x|
+ @all_log_collections_for[x] = []
+ end
+
+ # TODO: make sure we get every page of results from API server
+ Collection.where(uuid: uuids).each do |collection|
+ @all_log_collections_for[collection.uuid] << collection
+ end
+ end
+
end