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10576: Add retries to arvcontainer. Add command line options to documentation.
[arvados.git]
/
sdk
/
cwl
/
arvados_cwl
/
arvtool.py
diff --git
a/sdk/cwl/arvados_cwl/arvtool.py
b/sdk/cwl/arvados_cwl/arvtool.py
index 7107ba0a301ff9a80cf03386f78817ec021b2fd9..987ce8967aef2934d6d0f17bf3316e9eb85d70cf 100644
(file)
--- a/
sdk/cwl/arvados_cwl/arvtool.py
+++ b/
sdk/cwl/arvados_cwl/arvtool.py
@@
-37,4
+37,6
@@
class ArvadosCommandTool(CommandLineTool):
elif self.work_api == "jobs":
kwargs["outdir"] = "$(task.outdir)"
kwargs["docker_outdir"] = "$(task.outdir)"
elif self.work_api == "jobs":
kwargs["outdir"] = "$(task.outdir)"
kwargs["docker_outdir"] = "$(task.outdir)"
+ kwargs["tmpdir"] = "$(task.tmpdir)"
+ kwargs["docker_tmpdir"] = "$(task.tmpdir)"
return super(ArvadosCommandTool, self).job(joborder, output_callback, **kwargs)
return super(ArvadosCommandTool, self).job(joborder, output_callback, **kwargs)