"bufio"
"bytes"
"context"
+ _ "embed"
"errors"
"flag"
"fmt"
var Command cmd.Handler = &installCommand{}
-const devtestDatabasePassword = "insecure_arvados_test"
+const goversion = "1.17.7"
+
+const (
+ rubyversion = "2.7.5"
+ bundlerversion = "2.2.19"
+ singularityversion = "3.7.4"
+ pjsversion = "1.9.8"
+ geckoversion = "0.24.0"
+ gradleversion = "5.3.1"
+ nodejsversion = "v12.22.11"
+ devtestDatabasePassword = "insecure_arvados_test"
+ workbench2version = "5e020488f67b5bc919796e0dc8b0b9f3b3ff23b0"
+)
+
+//go:embed arvados.service
+var arvadosServiceFile []byte
type installCommand struct {
ClusterType string
"default-jdk-headless",
"default-jre-headless",
"gettext",
- "iceweasel",
"libattr1-dev",
"libcrypt-ssleay-perl",
"libfuse-dev",
"make",
"net-tools",
"pandoc",
- "perl-modules",
"pkg-config",
"postgresql",
"postgresql-contrib",
"wget",
"xvfb",
)
+ if test {
+ if osv.Debian && osv.Major <= 10 {
+ pkgs = append(pkgs, "iceweasel")
+ } else {
+ pkgs = append(pkgs, "firefox")
+ }
+ }
if dev || test {
- pkgs = append(pkgs,
- "squashfs-tools", // for singularity
- )
+ pkgs = append(pkgs, "squashfs-tools") // for singularity
}
switch {
+ case osv.Debian && osv.Major >= 11:
+ pkgs = append(pkgs, "libcurl4", "perl-modules-5.32")
case osv.Debian && osv.Major >= 10:
- pkgs = append(pkgs, "libcurl4")
+ pkgs = append(pkgs, "libcurl4", "perl-modules")
default:
- pkgs = append(pkgs, "libcurl3")
+ pkgs = append(pkgs, "libcurl3", "perl-modules")
}
cmd := exec.CommandContext(ctx, "apt-get")
if inst.EatMyData {
os.Mkdir("/var/lib/arvados", 0755)
os.Mkdir("/var/lib/arvados/tmp", 0700)
if prod || pkg {
- os.Mkdir("/var/lib/arvados/wwwtmp", 0700)
u, er := user.Lookup("www-data")
if er != nil {
err = fmt.Errorf("user.Lookup(%q): %w", "www-data", er)
}
uid, _ := strconv.Atoi(u.Uid)
gid, _ := strconv.Atoi(u.Gid)
+ os.Mkdir("/var/lib/arvados/wwwtmp", 0700)
err = os.Chown("/var/lib/arvados/wwwtmp", uid, gid)
if err != nil {
return 1
}
}
- rubyversion := "2.7.2"
rubymajorversion := rubyversion[:strings.LastIndex(rubyversion, ".")]
if haverubyversion, err := exec.Command("/var/lib/arvados/bin/ruby", "-v").CombinedOutput(); err == nil && bytes.HasPrefix(haverubyversion, []byte("ruby "+rubyversion)) {
logger.Print("ruby " + rubyversion + " already installed")
}
if !prod {
- goversion := "1.17.1"
if havegoversion, err := exec.Command("/usr/local/bin/go", "version").CombinedOutput(); err == nil && bytes.HasPrefix(havegoversion, []byte("go version go"+goversion+" ")) {
logger.Print("go " + goversion + " already installed")
} else {
cd /tmp
rm -rf /var/lib/arvados/go/
wget --progress=dot:giga -O- https://storage.googleapis.com/golang/go`+goversion+`.linux-amd64.tar.gz | tar -C /var/lib/arvados -xzf -
-ln -sf /var/lib/arvados/go/bin/* /usr/local/bin/
+ln -sfv /var/lib/arvados/go/bin/* /usr/local/bin/
`, stdout, stderr)
if err != nil {
return 1
}
if !prod && !pkg {
- pjsversion := "1.9.8"
if havepjsversion, err := exec.Command("/usr/local/bin/phantomjs", "--version").CombinedOutput(); err == nil && string(havepjsversion) == "1.9.8\n" {
logger.Print("phantomjs " + pjsversion + " already installed")
} else {
err = inst.runBash(`
PJS=phantomjs-`+pjsversion+`-linux-x86_64
-wget --progress=dot:giga -O- https://bitbucket.org/ariya/phantomjs/downloads/$PJS.tar.bz2 | tar -C /var/lib/arvados -xjf -
-ln -sf /var/lib/arvados/$PJS/bin/phantomjs /usr/local/bin/
+wget --progress=dot:giga -O- https://cache.arvados.org/$PJS.tar.bz2 | tar -C /var/lib/arvados -xjf -
+ln -sfv /var/lib/arvados/$PJS/bin/phantomjs /usr/local/bin/
`, stdout, stderr)
if err != nil {
return 1
}
}
- geckoversion := "0.24.0"
if havegeckoversion, err := exec.Command("/usr/local/bin/geckodriver", "--version").CombinedOutput(); err == nil && strings.Contains(string(havegeckoversion), " "+geckoversion+" ") {
logger.Print("geckodriver " + geckoversion + " already installed")
} else {
err = inst.runBash(`
GD=v`+geckoversion+`
wget --progress=dot:giga -O- https://github.com/mozilla/geckodriver/releases/download/$GD/geckodriver-$GD-linux64.tar.gz | tar -C /var/lib/arvados/bin -xzf - geckodriver
-ln -sf /var/lib/arvados/bin/geckodriver /usr/local/bin/
-`, stdout, stderr)
- if err != nil {
- return 1
- }
- }
-
- nodejsversion := "v12.22.2"
- if havenodejsversion, err := exec.Command("/usr/local/bin/node", "--version").CombinedOutput(); err == nil && string(havenodejsversion) == nodejsversion+"\n" {
- logger.Print("nodejs " + nodejsversion + " already installed")
- } else {
- err = inst.runBash(`
-NJS=`+nodejsversion+`
-wget --progress=dot:giga -O- https://nodejs.org/dist/${NJS}/node-${NJS}-linux-x64.tar.xz | sudo tar -C /var/lib/arvados -xJf -
-ln -sf /var/lib/arvados/node-${NJS}-linux-x64/bin/{node,npm} /usr/local/bin/
+ln -sfv /var/lib/arvados/bin/geckodriver /usr/local/bin/
`, stdout, stderr)
if err != nil {
return 1
}
}
- gradleversion := "5.3.1"
if havegradleversion, err := exec.Command("/usr/local/bin/gradle", "--version").CombinedOutput(); err == nil && strings.Contains(string(havegradleversion), "Gradle "+gradleversion+"\n") {
logger.Print("gradle " + gradleversion + " already installed")
} else {
trap "rm ${zip}" ERR
wget --progress=dot:giga -O${zip} https://services.gradle.org/distributions/gradle-${G}-bin.zip
unzip -o -d /var/lib/arvados ${zip}
-ln -sf /var/lib/arvados/gradle-${G}/bin/gradle /usr/local/bin/
+ln -sfv /var/lib/arvados/gradle-${G}/bin/gradle /usr/local/bin/
rm ${zip}
`, stdout, stderr)
if err != nil {
}
}
- singularityversion := "3.7.4"
if havesingularityversion, err := exec.Command("/var/lib/arvados/bin/singularity", "--version").CombinedOutput(); err == nil && strings.Contains(string(havesingularityversion), singularityversion) {
logger.Print("singularity " + singularityversion + " already installed")
} else if dev || test {
}
}
+ if !prod {
+ if havenodejsversion, err := exec.Command("/usr/local/bin/node", "--version").CombinedOutput(); err == nil && string(havenodejsversion) == nodejsversion+"\n" {
+ logger.Print("nodejs " + nodejsversion + " already installed")
+ } else {
+ err = inst.runBash(`
+NJS=`+nodejsversion+`
+wget --progress=dot:giga -O- https://nodejs.org/dist/${NJS}/node-${NJS}-linux-x64.tar.xz | sudo tar -C /var/lib/arvados -xJf -
+ln -sfv /var/lib/arvados/node-${NJS}-linux-x64/bin/{node,npm} /usr/local/bin/
+`, stdout, stderr)
+ if err != nil {
+ return 1
+ }
+ }
+
+ if haveyarnversion, err := exec.Command("/usr/local/bin/yarn", "--version").CombinedOutput(); err == nil && len(haveyarnversion) > 0 {
+ logger.Print("yarn " + strings.TrimSpace(string(haveyarnversion)) + " already installed")
+ } else {
+ err = inst.runBash(`
+npm install -g yarn
+ln -sfv /var/lib/arvados/node-`+nodejsversion+`-linux-x64/bin/{yarn,yarnpkg} /usr/local/bin/
+`, stdout, stderr)
+ if err != nil {
+ return 1
+ }
+ }
+
+ if havewb2version, err := exec.Command("git", "--git-dir=/var/lib/arvados/arvados-workbench2/.git", "log", "-n1", "--format=%H").CombinedOutput(); err == nil && string(havewb2version) == workbench2version+"\n" {
+ logger.Print("workbench2 repo is already at " + workbench2version)
+ } else {
+ err = inst.runBash(`
+V=`+workbench2version+`
+cd /var/lib/arvados
+if [[ ! -e arvados-workbench2 ]]; then
+ git clone https://git.arvados.org/arvados-workbench2.git
+ cd arvados-workbench2
+ git checkout $V
+else
+ cd arvados-workbench2
+ if ! git checkout $V; then
+ git fetch
+ git checkout yarn.lock
+ git checkout $V
+ fi
+fi
+rm -rf build
+`, stdout, stderr)
+ if err != nil {
+ return 1
+ }
+ }
+
+ if err = inst.runBash(`
+cd /var/lib/arvados/arvados-workbench2
+yarn install
+`, stdout, stderr); err != nil {
+ return 1
+ }
+ }
+
if prod || pkg {
+ // Install Go programs to /var/lib/arvados/bin/
+ for _, srcdir := range []string{
+ "cmd/arvados-client",
+ "cmd/arvados-server",
+ "services/crunch-dispatch-local",
+ "services/crunch-dispatch-slurm",
+ "services/health",
+ "services/keep-balance",
+ "services/keepstore",
+ "services/ws",
+ } {
+ fmt.Fprintf(stderr, "building %s...\n", srcdir)
+ cmd := exec.Command("go", "install", "-ldflags", "-X git.arvados.org/arvados.git/lib/cmd.version="+inst.PackageVersion+" -X main.version="+inst.PackageVersion+" -s -w")
+ cmd.Env = append(cmd.Env, os.Environ()...)
+ cmd.Env = append(cmd.Env, "GOBIN=/var/lib/arvados/bin")
+ cmd.Dir = filepath.Join(inst.SourcePath, srcdir)
+ cmd.Stdout = stdout
+ cmd.Stderr = stderr
+ err = cmd.Run()
+ if err != nil {
+ return 1
+ }
+ }
+
+ // Symlink user-facing Go programs /usr/bin/x ->
+ // /var/lib/arvados/bin/x
+ for _, prog := range []string{"arvados-client", "arvados-server"} {
+ err = os.Remove("/usr/bin/" + prog)
+ if err != nil && !errors.Is(err, os.ErrNotExist) {
+ return 1
+ }
+ err = os.Symlink("/var/lib/arvados/bin/"+prog, "/usr/bin/"+prog)
+ if err != nil {
+ return 1
+ }
+ }
+
+ // Copy assets from source tree to /var/lib/arvados/share
+ cmd := exec.Command("install", "-v", "-t", "/var/lib/arvados/share", filepath.Join(inst.SourcePath, "sdk/python/tests/nginx.conf"))
+ cmd.Stdout = stdout
+ cmd.Stderr = stderr
+ err = cmd.Run()
+ if err != nil {
+ return 1
+ }
+
// Install Rails apps to /var/lib/arvados/{railsapi,workbench1}/
for dstdir, srcdir := range map[string]string{
"railsapi": "services/api",
"-a", "--no-owner", "--no-group", "--delete-after", "--delete-excluded",
"--exclude", "/coverage",
"--exclude", "/log",
+ "--exclude", "/node_modules",
"--exclude", "/tmp",
+ "--exclude", "/public/assets",
"--exclude", "/vendor",
"--exclude", "/config/environments",
"./", "/var/lib/arvados/"+dstdir+"/")
return 1
}
for _, cmdline := range [][]string{
- {"mkdir", "-p", "log", "tmp", ".bundle", "/var/www/.gem", "/var/www/.bundle", "/var/www/.passenger"},
+ {"mkdir", "-p", "log", "public/assets", "tmp", "vendor", ".bundle", "/var/www/.bundle", "/var/www/.gem", "/var/www/.npm", "/var/www/.passenger"},
{"touch", "log/production.log"},
- {"chown", "-R", "--from=root", "www-data:www-data", "/var/www/.gem", "/var/www/.bundle", "/var/www/.passenger", "log", "tmp", ".bundle", "Gemfile.lock", "config.ru", "config/environment.rb"},
- {"sudo", "-u", "www-data", "/var/lib/arvados/bin/gem", "install", "--user", "--conservative", "--no-document", "bundler:2.2.19"},
- {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "install", "--deployment", "--jobs", "8", "--path", "/var/www/.gem"},
+ {"chown", "-R", "--from=root", "www-data:www-data", "/var/www/.bundle", "/var/www/.gem", "/var/www/.npm", "/var/www/.passenger", "log", "tmp", "vendor", ".bundle", "Gemfile.lock", "config.ru", "config/environment.rb"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/gem", "install", "--user", "--conservative", "--no-document", "bundler:" + bundlerversion},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "install", "--deployment", "--jobs", "8", "--path", "/var/www/.gem", "--without", "development test diagnostics performance"},
+
+ {"chown", "www-data:www-data", ".", "public/assets"},
+ // {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "system", "true"},
+ {"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "/var/lib/arvados/bin/bundle", "exec", "rake", "npm:install"},
+ {"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "/var/lib/arvados/bin/bundle", "exec", "rake", "assets:precompile"},
+ {"chown", "root:root", "."},
+ {"chown", "-R", "root:root", "public/assets", "vendor"},
+
{"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "build-native-support"},
{"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "install-standalone-runtime"},
} {
+ if cmdline[len(cmdline)-2] == "rake" && dstdir != "workbench1" {
+ continue
+ }
cmd = exec.Command(cmdline[0], cmdline[1:]...)
cmd.Dir = "/var/lib/arvados/" + dstdir
cmd.Stdout = stdout
}
}
- // Install Go programs to /var/lib/arvados/bin/
- for _, srcdir := range []string{
- "cmd/arvados-client",
- "cmd/arvados-server",
- "services/arv-git-httpd",
- "services/crunch-dispatch-local",
- "services/crunch-dispatch-slurm",
- "services/health",
- "services/keep-balance",
- "services/keep-web",
- "services/keepproxy",
- "services/keepstore",
- "services/ws",
- } {
- fmt.Fprintf(stderr, "building %s...\n", srcdir)
- cmd := exec.Command("go", "install", "-ldflags", "-X git.arvados.org/arvados.git/lib/cmd.version="+inst.PackageVersion+" -X main.version="+inst.PackageVersion)
- cmd.Env = append(cmd.Env, os.Environ()...)
- cmd.Env = append(cmd.Env, "GOBIN=/var/lib/arvados/bin")
- cmd.Dir = filepath.Join(inst.SourcePath, srcdir)
- cmd.Stdout = stdout
- cmd.Stderr = stderr
- err = cmd.Run()
- if err != nil {
- return 1
- }
+ // Install workbench2 app to /var/lib/arvados/workbench2/
+ if err = inst.runBash(`
+cd /var/lib/arvados/arvados-workbench2
+VERSION="`+inst.PackageVersion+`" BUILD_NUMBER=1 GIT_COMMIT="`+workbench2version[:9]+`" yarn build
+rsync -a --delete-after build/ /var/lib/arvados/workbench2/
+`, stdout, stderr); err != nil {
+ return 1
}
- // Copy assets from source tree to /var/lib/arvados/share
- cmd := exec.Command("install", "-v", "-t", "/var/lib/arvados/share", filepath.Join(inst.SourcePath, "sdk/python/tests/nginx.conf"))
- cmd.Stdout = stdout
- cmd.Stderr = stderr
- err = cmd.Run()
+ err = os.WriteFile("/lib/systemd/system/arvados.service", arvadosServiceFile, 0777)
+ if err != nil {
+ return 1
+ }
+ // This is equivalent to "systemd enable", but does
+ // not depend on the systemctl program being
+ // available.
+ symlink := "/etc/systemd/system/multi-user.target.wants/arvados.service"
+ err = os.Remove(symlink)
+ if err != nil && !errors.Is(err, os.ErrNotExist) {
+ return 1
+ }
+ err = os.Symlink("/lib/systemd/system/arvados.service", symlink)
if err != nil {
return 1
}
projects / arvados.git / blobdiff