+
+ // Install python SDK and arv-mount in
+ // /var/lib/arvados/lib/python.
+ //
+ // setup.py writes a file in the source directory in
+ // order to include the version number in the package
+ // itself. We don't want to write to the source tree
+ // (in "arvados-package" context it's mounted
+ // readonly) so we run setup.py in a temporary copy of
+ // the source dir.
+ if err = inst.runBash(`
+v=/var/lib/arvados/lib/python
+tmp=/var/lib/arvados/tmp/python
+python3 -m venv "$v"
+. "$v/bin/activate"
+pip3 install --no-cache-dir 'setuptools>=68' 'pip>=20'
+export ARVADOS_BUILDING_VERSION="`+inst.PackageVersion+`"
+for src in "`+inst.SourcePath+`/sdk/python" "`+inst.SourcePath+`/services/fuse"; do
+ rsync -a --delete-after "$src/" "$tmp/"
+ env -C "$tmp" python3 setup.py build
+ pip3 install "$tmp"
+ rm -rf "$tmp"
+done
+`, stdout, stderr); err != nil {
+ return 1
+ }
+
+ // Install RailsAPI to /var/lib/arvados/railsapi/
+ fmt.Fprintln(stderr, "building railsapi...")
+ cmd = exec.Command("rsync",
+ "-a", "--no-owner", "--no-group", "--delete-after", "--delete-excluded",
+ "--exclude", "/coverage",
+ "--exclude", "/log",
+ "--exclude", "/node_modules",
+ "--exclude", "/tmp",
+ "--exclude", "/public/assets",
+ "--exclude", "/vendor",
+ "--exclude", "/config/environments",
+ "./", "/var/lib/arvados/railsapi/")
+ cmd.Dir = filepath.Join(inst.SourcePath, "services", "api")
+ cmd.Stdout = stdout
+ cmd.Stderr = stderr
+ err = cmd.Run()
+ if err != nil {
+ return 1
+ }
+ for _, cmdline := range [][]string{
+ {"mkdir", "-p", "log", "public/assets", "tmp", "vendor", ".bundle", "/var/www/.bundle", "/var/www/.gem", "/var/www/.npm", "/var/www/.passenger"},
+ {"touch", "log/production.log"},
+ {"chown", "-R", "--from=root", "www-data:www-data", "/var/www/.bundle", "/var/www/.gem", "/var/www/.npm", "/var/www/.passenger", "log", "tmp", "vendor", ".bundle", "Gemfile.lock", "config.ru", "config/environment.rb"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/gem", "install", "--user", "--conservative", "--no-document", "bundler:" + inst.BundlerVersion},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "deployment", "true"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "path", "/var/www/.gem"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "without", "development test diagnostics performance"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "install", "--jobs", fmt.Sprintf("%d", runtime.NumCPU())},
+
+ {"chown", "www-data:www-data", ".", "public/assets"},
+ // {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "system", "true"},
+ {"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "PATH=/var/lib/arvados/bin:" + os.Getenv("PATH"), "/var/lib/arvados/bin/bundle", "exec", "rake", "npm:install"},
+ {"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "PATH=/var/lib/arvados/bin:" + os.Getenv("PATH"), "/var/lib/arvados/bin/bundle", "exec", "rake", "assets:precompile"},
+ {"chown", "root:root", "."},
+ {"chown", "-R", "root:root", "public/assets", "vendor"},
+
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "build-native-support"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "install-standalone-runtime"},
+ } {
+ if cmdline[len(cmdline)-2] == "rake" {
+ continue
+ }
+ cmd = exec.Command(cmdline[0], cmdline[1:]...)
+ cmd.Dir = "/var/lib/arvados/railsapi"
+ cmd.Stdout = stdout
+ cmd.Stderr = stderr
+ fmt.Fprintf(stderr, "... %s\n", cmd.Args)
+ err = cmd.Run()
+ if err != nil {
+ return 1
+ }
+ }
+ cmd = exec.Command("sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "validate-install")
+ cmd.Dir = "/var/lib/arvados/railsapi"
+ cmd.Stdout = stdout
+ cmd.Stderr = stderr
+ err = cmd.Run()
+ if err != nil && !strings.Contains(err.Error(), "exit status 2") {
+ // Exit code 2 indicates there were warnings (like
+ // "other passenger installations have been detected",
+ // which we can't expect to avoid) but no errors.
+ // Other non-zero exit codes (1, 9) indicate errors.
+ return 1
+ }
+
+ // Install workbench2 app to
+ // /var/lib/arvados/workbench2/.
+ //
+ // We copy the source tree from the (possibly
+ // readonly) source tree into a temp dir because `yarn
+ // build` writes to {source-tree}/build/. When we
+ // upgrade to react-scripts >= 4.0.2 we may be able to
+ // build from the source dir and write directly to the
+ // final destination (using
+ // YARN_INSTALL_STATE_PATH=/dev/null
+ // BUILD_PATH=/var/lib/arvados/workbench2) instead of
+ // using two rsync steps here.
+ if err = inst.runBash(`
+src="`+inst.SourcePath+`/services/workbench2"
+tmp=/var/lib/arvados/tmp/workbench2
+trap "rm -r ${tmp}" ERR EXIT
+dst=/var/lib/arvados/workbench2
+rsync -a --delete-after "$src/" "$tmp/"
+env -C "$tmp" VERSION="`+inst.PackageVersion+`" BUILD_NUMBER=1 GIT_COMMIT="`+inst.Commit[:9]+`" yarn build
+rsync -a --delete-after "$tmp/build/" "$dst/"
+`, stdout, stderr); err != nil {
+ return 1
+ }
+
+ // Install arvados-cli gem (binaries go in
+ // /var/lib/arvados/bin)
+ if err = inst.runBash(`
+/var/lib/arvados/bin/gem install --conservative --no-document arvados-cli
+`, stdout, stderr); err != nil {
+ return 1
+ }
+
+ err = os.WriteFile("/lib/systemd/system/arvados.service", arvadosServiceFile, 0777)
+ if err != nil {
+ return 1
+ }
+ if prod {
+ // (fpm will do this for us in the pkg case)
+ // This is equivalent to "systemd enable", but
+ // does not depend on the systemctl program
+ // being available:
+ symlink := "/etc/systemd/system/multi-user.target.wants/arvados.service"
+ err = os.Remove(symlink)
+ if err != nil && !errors.Is(err, os.ErrNotExist) {
+ return 1
+ }
+ err = os.Symlink("/lib/systemd/system/arvados.service", symlink)
+ if err != nil {
+ return 1
+ }
+ }
+
+ // Add symlinks in /usr/bin for user-facing programs
+ for _, srcdst := range [][]string{
+ // go
+ {"bin/arvados-client"},
+ {"bin/arvados-client", "arv"},
+ {"bin/arvados-server"},
+ // sdk/cli
+ {"bin/arv", "arv-ruby"},
+ {"bin/arv-tag"},
+ // sdk/python
+ {"lib/python/bin/arv-copy"},
+ {"lib/python/bin/arv-federation-migrate"},
+ {"lib/python/bin/arv-get"},
+ {"lib/python/bin/arv-keepdocker"},
+ {"lib/python/bin/arv-ls"},
+ {"lib/python/bin/arv-migrate-docker19"},
+ {"lib/python/bin/arv-normalize"},
+ {"lib/python/bin/arv-put"},
+ {"lib/python/bin/arv-ws"},
+ // services/fuse
+ {"lib/python/bin/arv-mount"},
+ } {
+ src := "/var/lib/arvados/" + srcdst[0]
+ if _, err = os.Stat(src); err != nil {
+ return 1
+ }
+ dst := srcdst[len(srcdst)-1]
+ _, dst = filepath.Split(dst)
+ dst = "/usr/bin/" + dst
+ err = os.Remove(dst)
+ if err != nil && !errors.Is(err, os.ErrNotExist) {
+ return 1
+ }
+ err = os.Symlink(src, dst)
+ if err != nil {
+ return 1
+ }
+ }