+// Copyright (C) The Arvados Authors. All rights reserved.
+//
+// SPDX-License-Identifier: AGPL-3.0
+
package main
import (
"fmt"
"io"
"io/ioutil"
- "log"
"net"
"os"
"os/exec"
"git.curoverse.com/arvados.git/sdk/go/arvados"
"git.curoverse.com/arvados.git/sdk/go/arvadosclient"
- "git.curoverse.com/arvados.git/sdk/go/keepclient"
+ "git.curoverse.com/arvados.git/sdk/go/arvadostest"
"git.curoverse.com/arvados.git/sdk/go/manifest"
dockertypes "github.com/docker/docker/api/types"
Logs map[string]*bytes.Buffer
sync.Mutex
WasSetRunning bool
+ callraw bool
}
type KeepTestClient struct {
var otherManifest = ". 68a84f561b1d1708c6baff5e019a9ab3+46+Ae5d0af96944a3690becb1decdf60cc1c937f556d@5693216f 0:46:md5sum.txt\n"
var otherPDH = "a3e8f74c6f101eae01fa08bfb4e49b3a+54"
-var normalizedManifestWithSubdirs = ". 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 0:9:file1_in_main.txt 9:18:file2_in_main.txt 0:27:zzzzz-8i9sb-bcdefghijkdhvnk.log.txt\n./subdir1 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt\n./subdir1/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt\n"
+var normalizedManifestWithSubdirs = `. 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 0:9:file1_in_main.txt 9:18:file2_in_main.txt 0:27:zzzzz-8i9sb-bcdefghijkdhvnk.log.txt
+./subdir1 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt
+./subdir1/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt
+`
+
var normalizedWithSubdirsPDH = "a0def87f80dd594d4675809e83bd4f15+367"
var denormalizedManifestWithSubdirs = ". 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 0:9:file1_in_main.txt 9:18:file2_in_main.txt 0:27:zzzzz-8i9sb-bcdefghijkdhvnk.log.txt 0:10:subdir1/file1_in_subdir1.txt 10:17:subdir1/file2_in_subdir1.txt\n"
t := &TestDockerClient{}
t.logReader, t.logWriter = io.Pipe()
t.finish = exitCode
- t.stop = make(chan bool)
+ t.stop = make(chan bool, 1)
t.cwd = "/"
return t
}
}
func (t *TestDockerClient) ContainerStart(ctx context.Context, container string, options dockertypes.ContainerStartOptions) error {
+ if t.finish == 3 {
+ return errors.New(`Error response from daemon: oci runtime error: container_linux.go:247: starting container process caused "process_linux.go:359: container init caused \"rootfs_linux.go:54: mounting \\\"/tmp/keep453790790/by_id/99999999999999999999999999999999+99999/myGenome\\\" to rootfs \\\"/tmp/docker/overlay2/9999999999999999999999999999999999999999999999999999999999999999/merged\\\" at \\\"/tmp/docker/overlay2/9999999999999999999999999999999999999999999999999999999999999999/merged/keep/99999999999999999999999999999999+99999/myGenome\\\" caused \\\"no such file or directory\\\"\""`)
+ }
+ if t.finish == 4 {
+ return errors.New(`panic: standard_init_linux.go:175: exec user process caused "no such file or directory"`)
+ }
+ if t.finish == 5 {
+ return errors.New(`Error response from daemon: Cannot start container 41f26cbc43bcc1280f4323efb1830a394ba8660c9d1c2b564ba42bf7f7694845: [8] System error: no such file or directory`)
+ }
+ if t.finish == 6 {
+ return errors.New(`Error response from daemon: Cannot start container 58099cd76c834f3dc2a4fb76c8028f049ae6d4fdf0ec373e1f2cfea030670c2d: [8] System error: exec: "foobar": executable file not found in $PATH`)
+ }
+
if container == "abcde" {
- go t.fn(t)
+ // t.fn gets executed in ContainerWait
return nil
} else {
return errors.New("Invalid container id")
return nil
}
-func (t *TestDockerClient) ContainerWait(ctx context.Context, container string) (int64, error) {
- return int64(t.finish), nil
+func (t *TestDockerClient) ContainerWait(ctx context.Context, container string, condition dockercontainer.WaitCondition) (<-chan dockercontainer.ContainerWaitOKBody, <-chan error) {
+ body := make(chan dockercontainer.ContainerWaitOKBody)
+ err := make(chan error)
+ go func() {
+ t.fn(t)
+ body <- dockercontainer.ContainerWaitOKBody{StatusCode: int64(t.finish)}
+ close(body)
+ close(err)
+ }()
+ return body, err
}
func (t *TestDockerClient) ImageInspectWithRaw(ctx context.Context, image string) (dockertypes.ImageInspect, []byte, error) {
+ if t.finish == 2 {
+ return dockertypes.ImageInspect{}, nil, fmt.Errorf("Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?")
+ }
+
if t.imageLoaded == image {
return dockertypes.ImageInspect{}, nil, nil
} else {
}
func (t *TestDockerClient) ImageLoad(ctx context.Context, input io.Reader, quiet bool) (dockertypes.ImageLoadResponse, error) {
+ if t.finish == 2 {
+ return dockertypes.ImageLoadResponse{}, fmt.Errorf("Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?")
+ }
_, err := io.Copy(ioutil.Discard, input)
if err != nil {
return dockertypes.ImageLoadResponse{}, err
func (client *ArvTestClient) CallRaw(method, resourceType, uuid, action string,
parameters arvadosclient.Dict) (reader io.ReadCloser, err error) {
- j := []byte(`{
- "command": ["sleep", "1"],
- "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
- "cwd": ".",
- "environment": {},
- "mounts": {"/tmp": {"kind": "tmp"} },
- "output_path": "/tmp",
- "priority": 1,
- "runtime_constraints": {}
- }`)
- return ioutil.NopCloser(bytes.NewReader(j)), nil
+ var j []byte
+ if method == "GET" && resourceType == "containers" && action == "" && !client.callraw {
+ j, err = json.Marshal(client.Container)
+ } else {
+ j = []byte(`{
+ "command": ["sleep", "1"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"}, "/json": {"kind": "json", "content": {"number": 123456789123456789}}},
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`)
+ }
+ return ioutil.NopCloser(bytes.NewReader(j)), err
}
func (client *ArvTestClient) Get(resourceType string, uuid string, parameters arvadosclient.Dict, output interface{}) error {
return fmt.Sprintf("%s+%d", hash, len(buf)), len(buf), nil
}
+func (*KeepTestClient) ClearBlockCache() {
+}
+
type FileWrapper struct {
io.ReadCloser
- len uint64
+ len int64
}
-func (fw FileWrapper) Len() uint64 {
- return fw.len
+func (fw FileWrapper) Readdir(n int) ([]os.FileInfo, error) {
+ return nil, errors.New("not implemented")
}
func (fw FileWrapper) Seek(int64, int) (int64, error) {
return 0, errors.New("not implemented")
}
-func (client *KeepTestClient) ManifestFileReader(m manifest.Manifest, filename string) (keepclient.Reader, error) {
+func (fw FileWrapper) Size() int64 {
+ return fw.len
+}
+
+func (fw FileWrapper) Stat() (os.FileInfo, error) {
+ return nil, errors.New("not implemented")
+}
+
+func (fw FileWrapper) Truncate(int64) error {
+ return errors.New("not implemented")
+}
+
+func (fw FileWrapper) Write([]byte) (int, error) {
+ return 0, errors.New("not implemented")
+}
+
+func (client *KeepTestClient) ManifestFileReader(m manifest.Manifest, filename string) (arvados.File, error) {
if filename == hwImageId+".tar" {
rdr := ioutil.NopCloser(&bytes.Buffer{})
client.Called = true
return "", 0, errors.New("KeepError")
}
-func (KeepErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (keepclient.Reader, error) {
+func (KeepErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (arvados.File, error) {
return nil, errors.New("KeepError")
}
+func (KeepErrorTestClient) ClearBlockCache() {
+}
+
type KeepReadErrorTestClient struct{}
func (KeepReadErrorTestClient) PutHB(hash string, buf []byte) (string, int, error) {
return "", 0, nil
}
-type ErrorReader struct{}
-
-func (ErrorReader) Read(p []byte) (n int, err error) {
- return 0, errors.New("ErrorReader")
+func (KeepReadErrorTestClient) ClearBlockCache() {
}
-func (ErrorReader) Close() error {
- return nil
+type ErrorReader struct {
+ FileWrapper
}
-func (ErrorReader) Len() uint64 {
- return 0
+func (ErrorReader) Read(p []byte) (n int, err error) {
+ return 0, errors.New("ErrorReader")
}
func (ErrorReader) Seek(int64, int) (int64, error) {
return 0, errors.New("ErrorReader")
}
-func (KeepReadErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (keepclient.Reader, error) {
+func (KeepReadErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (arvados.File, error) {
return ErrorReader{}, nil
}
}
err = cr.Run()
- c.Check(err, IsNil)
- c.Check(api.WasSetRunning, Equals, true)
-
- c.Check(api.Content[api.Calls-1]["container"].(arvadosclient.Dict)["log"], NotNil)
+ if api.CalledWith("container.state", "Complete") != nil {
+ c.Check(err, IsNil)
+ }
+ if exitCode != 2 {
+ c.Check(api.WasSetRunning, Equals, true)
+ c.Check(api.Content[api.Calls-2]["container"].(arvadosclient.Dict)["log"], NotNil)
+ }
if err != nil {
for k, v := range api.Logs {
c.Check(api.CalledWith("container.log", nil), NotNil)
c.Check(api.CalledWith("container.state", "Cancelled"), NotNil)
- c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "foo\n"), Equals, true)
+ c.Check(api.Logs["stdout"].String(), Matches, "(?ms).*foo\n$")
}
func (s *TestSuite) TestFullRunSetEnv(c *C) {
cr.Container.Mounts = make(map[string]arvados.Mount)
cr.Container.Mounts["/tmp"] = arvados.Mount{Kind: "tmp"}
cr.OutputPath = "/tmp"
-
+ cr.statInterval = 5 * time.Second
err := cr.SetupMounts()
c.Check(err, IsNil)
- c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
+ "--read-write", "--crunchstat-interval=5",
+ "--mount-by-pdh", "by_id", realTemp + "/keep1"})
c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/tmp"})
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, IsNil)
- c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
+ "--read-write", "--crunchstat-interval=5",
+ "--mount-by-pdh", "by_id", realTemp + "/keep1"})
c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/out", realTemp + "/3:/tmp"})
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, IsNil)
- c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
+ "--read-write", "--crunchstat-interval=5",
+ "--mount-by-pdh", "by_id", realTemp + "/keep1"})
c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/tmp", stubCertPath + ":/etc/arvados/ca-certificates.crt:ro"})
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
err := cr.SetupMounts()
c.Check(err, IsNil)
- c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
+ "--read-write", "--crunchstat-interval=5",
+ "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
c.Check(cr.Binds, DeepEquals, []string{realTemp + "/keep1/tmp0:/keeptmp"})
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, IsNil)
- c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
+ "--read-write", "--crunchstat-interval=5",
+ "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
sort.StringSlice(cr.Binds).Sort()
c.Check(cr.Binds, DeepEquals, []string{realTemp + "/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53:/keepinp:ro",
realTemp + "/keep1/tmp0:/keepout"})
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, IsNil)
- c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
+ "--read-write", "--crunchstat-interval=5",
+ "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
sort.StringSlice(cr.Binds).Sort()
c.Check(cr.Binds, DeepEquals, []string{realTemp + "/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53:/keepinp:ro",
realTemp + "/keep1/tmp0:/keepout"})
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
}{
{in: "foo", out: `"foo"`},
{in: nil, out: `null`},
- {in: map[string]int{"foo": 123}, out: `{"foo":123}`},
+ {in: map[string]int64{"foo": 123456789123456789}, out: `{"foo":123456789123456789}`},
} {
i = 0
cr.ArvMountPoint = ""
content, err := ioutil.ReadFile(realTemp + "/2/mountdata.json")
c.Check(err, IsNil)
c.Check(content, DeepEquals, []byte(test.out))
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, IsNil)
- c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other",
+ "--read-write", "--crunchstat-interval=5",
+ "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/tmp", realTemp + "/keep1/tmp0:/tmp/foo:ro"})
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, NotNil)
c.Check(err, ErrorMatches, `Writable mount points are not permitted underneath the output_path.*`)
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, NotNil)
c.Check(err, ErrorMatches, `Only mount points of kind 'collection' are supported underneath the output_path.*`)
+ os.RemoveAll(cr.ArvMountPoint)
cr.CleanupDirs()
checkEmpty()
}
err := cr.SetupMounts()
c.Check(err, NotNil)
c.Check(err, ErrorMatches, `Unsupported mount kind 'tmp' for stdin.*`)
+ os.RemoveAll(cr.ArvMountPoint)
+ cr.CleanupDirs()
+ checkEmpty()
+ }
+
+ // git_tree mounts
+ {
+ i = 0
+ cr.ArvMountPoint = ""
+ (*GitMountSuite)(nil).useTestGitServer(c)
+ cr.token = arvadostest.ActiveToken
+ cr.Container.Mounts = make(map[string]arvados.Mount)
+ cr.Container.Mounts = map[string]arvados.Mount{
+ "/tip": {
+ Kind: "git_tree",
+ UUID: arvadostest.Repository2UUID,
+ Commit: "fd3531f42995344f36c30b79f55f27b502f3d344",
+ Path: "/",
+ },
+ "/non-tip": {
+ Kind: "git_tree",
+ UUID: arvadostest.Repository2UUID,
+ Commit: "5ebfab0522851df01fec11ec55a6d0f4877b542e",
+ Path: "/",
+ },
+ }
+ cr.OutputPath = "/tmp"
+
+ err := cr.SetupMounts()
+ c.Check(err, IsNil)
+
+ // dirMap[mountpoint] == tmpdir
+ dirMap := make(map[string]string)
+ for _, bind := range cr.Binds {
+ tokens := strings.Split(bind, ":")
+ dirMap[tokens[1]] = tokens[0]
+
+ if cr.Container.Mounts[tokens[1]].Writable {
+ c.Check(len(tokens), Equals, 2)
+ } else {
+ c.Check(len(tokens), Equals, 3)
+ c.Check(tokens[2], Equals, "ro")
+ }
+ }
+
+ data, err := ioutil.ReadFile(dirMap["/tip"] + "/dir1/dir2/file with mode 0644")
+ c.Check(err, IsNil)
+ c.Check(string(data), Equals, "\000\001\002\003")
+ _, err = ioutil.ReadFile(dirMap["/tip"] + "/file only on testbranch")
+ c.Check(err, FitsTypeOf, &os.PathError{})
+ c.Check(os.IsNotExist(err), Equals, true)
+
+ data, err = ioutil.ReadFile(dirMap["/non-tip"] + "/dir1/dir2/file with mode 0644")
+ c.Check(err, IsNil)
+ c.Check(string(data), Equals, "\000\001\002\003")
+ data, err = ioutil.ReadFile(dirMap["/non-tip"] + "/file only on testbranch")
+ c.Check(err, IsNil)
+ c.Check(string(data), Equals, "testfile\n")
+
cr.CleanupDirs()
checkEmpty()
}
}
api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
- log.Printf("realtemp is %v", t.realTemp)
os.Symlink("/keep/foo/sub1file2", t.realTemp+"/2/baz")
os.Symlink("/keep/foo2/subdir1/file2_in_subdir1.txt", t.realTemp+"/2/baz2")
+ os.Symlink("/keep/foo2/subdir1", t.realTemp+"/2/baz3")
+ os.Mkdir(t.realTemp+"/2/baz4", 0700)
+ os.Symlink("/keep/foo2/subdir1/file2_in_subdir1.txt", t.realTemp+"/2/baz4/baz5")
t.logWriter.Close()
})
if strings.Index(collection["name"].(string), "output") == 0 {
manifest := collection["manifest_text"].(string)
c.Check(manifest, Equals, `. 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 9:18:baz 9:18:baz2
+./baz3 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt
+./baz3/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt
+./baz4 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 9:18:baz5
+`)
+ }
+ }
+ }
+}
+
+func (s *TestSuite) TestOutputError(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{}
+
+ api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ os.Symlink("/etc/hosts", t.realTemp+"/2/baz")
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.state", "Cancelled"), NotNil)
+}
+
+func (s *TestSuite) TestOutputSymlinkToOutput(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{}
+
+ api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ rf, _ := os.Create(t.realTemp + "/2/realfile")
+ rf.Write([]byte("foo"))
+ rf.Close()
+
+ os.Mkdir(t.realTemp+"/2/realdir", 0700)
+ rf, _ = os.Create(t.realTemp + "/2/realdir/subfile")
+ rf.Write([]byte("bar"))
+ rf.Close()
+
+ os.Symlink("/tmp/realfile", t.realTemp+"/2/file1")
+ os.Symlink("realfile", t.realTemp+"/2/file2")
+ os.Symlink("/tmp/file1", t.realTemp+"/2/file3")
+ os.Symlink("file2", t.realTemp+"/2/file4")
+ os.Symlink("realdir", t.realTemp+"/2/dir1")
+ os.Symlink("/tmp/realdir", t.realTemp+"/2/dir2")
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ for _, v := range api.Content {
+ if v["collection"] != nil {
+ collection := v["collection"].(arvadosclient.Dict)
+ if strings.Index(collection["name"].(string), "output") == 0 {
+ manifest := collection["manifest_text"].(string)
+ c.Check(manifest, Equals,
+ `. 7a2c86e102dcc231bd232aad99686dfa+15 0:3:file1 3:3:file2 6:3:file3 9:3:file4 12:3:realfile
+./dir1 37b51d194a7513e45b56f6524f2d51f2+3 0:3:subfile
+./dir2 37b51d194a7513e45b56f6524f2d51f2+3 0:3:subfile
+./realdir 37b51d194a7513e45b56f6524f2d51f2+3 0:3:subfile
`)
}
}
c.Check(api.CalledWith("collection.manifest_text", "./a b1946ac92492d2347c6235b4d2611184+6 0:6:out.txt\n./b 38af5c54926b620264ab1501150cf189+5 0:5:err.txt\n"), NotNil)
}
+
+func (s *TestSuite) TestNumberRoundTrip(c *C) {
+ cr := NewContainerRunner(&ArvTestClient{callraw: true}, &KeepTestClient{}, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ cr.fetchContainerRecord()
+
+ jsondata, err := json.Marshal(cr.Container.Mounts["/json"].Content)
+
+ c.Check(err, IsNil)
+ c.Check(string(jsondata), Equals, `{"number":123456789123456789}`)
+}
+
+func (s *TestSuite) TestEvalSymlinks(c *C) {
+ cr := NewContainerRunner(&ArvTestClient{callraw: true}, &KeepTestClient{}, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+
+ realTemp, err := ioutil.TempDir("", "crunchrun_test-")
+ c.Assert(err, IsNil)
+ defer os.RemoveAll(realTemp)
+
+ cr.HostOutputDir = realTemp
+
+ // Absolute path outside output dir
+ os.Symlink("/etc/passwd", realTemp+"/p1")
+
+ // Relative outside output dir
+ os.Symlink("../zip", realTemp+"/p2")
+
+ // Circular references
+ os.Symlink("p4", realTemp+"/p3")
+ os.Symlink("p5", realTemp+"/p4")
+ os.Symlink("p3", realTemp+"/p5")
+
+ // Target doesn't exist
+ os.Symlink("p99", realTemp+"/p6")
+
+ for _, v := range []string{"p1", "p2", "p3", "p4", "p5"} {
+ info, err := os.Lstat(realTemp + "/" + v)
+ _, _, _, err = cr.derefOutputSymlink(realTemp+"/"+v, info)
+ c.Assert(err, NotNil)
+ }
+}
+
+func (s *TestSuite) TestEvalSymlinkDir(c *C) {
+ cr := NewContainerRunner(&ArvTestClient{callraw: true}, &KeepTestClient{}, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+
+ realTemp, err := ioutil.TempDir("", "crunchrun_test-")
+ c.Assert(err, IsNil)
+ defer os.RemoveAll(realTemp)
+
+ cr.HostOutputDir = realTemp
+
+ // Absolute path outside output dir
+ os.Symlink(".", realTemp+"/loop")
+
+ v := "loop"
+ info, err := os.Lstat(realTemp + "/" + v)
+ _, err = cr.UploadOutputFile(realTemp+"/"+v, info, err, []string{}, nil, "", "", 0)
+ c.Assert(err, NotNil)
+}
+
+func (s *TestSuite) TestFullBrokenDocker1(c *C) {
+ tf, err := ioutil.TempFile("", "brokenNodeHook-")
+ c.Assert(err, IsNil)
+ defer os.Remove(tf.Name())
+
+ tf.Write([]byte(`#!/bin/sh
+exec echo killme
+`))
+ tf.Close()
+ os.Chmod(tf.Name(), 0700)
+
+ ech := tf.Name()
+ brokenNodeHook = &ech
+
+ api, _, _ := FullRunHelper(c, `{
+ "command": ["echo", "hello world"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+}`, nil, 2, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, "hello world\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.state", "Queued"), NotNil)
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*unable to run containers.*")
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*Running broken node hook.*")
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*killme.*")
+
+}
+
+func (s *TestSuite) TestFullBrokenDocker2(c *C) {
+ ech := ""
+ brokenNodeHook = &ech
+
+ api, _, _ := FullRunHelper(c, `{
+ "command": ["echo", "hello world"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+}`, nil, 2, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, "hello world\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.state", "Queued"), NotNil)
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*unable to run containers.*")
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*No broken node hook.*")
+}
+
+func (s *TestSuite) TestFullBrokenDocker3(c *C) {
+ ech := ""
+ brokenNodeHook = &ech
+
+ api, _, _ := FullRunHelper(c, `{
+ "command": ["echo", "hello world"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+}`, nil, 3, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, "hello world\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.state", "Cancelled"), NotNil)
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*unable to run containers.*")
+}
+
+func (s *TestSuite) TestBadCommand1(c *C) {
+ ech := ""
+ brokenNodeHook = &ech
+
+ api, _, _ := FullRunHelper(c, `{
+ "command": ["echo", "hello world"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+}`, nil, 4, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, "hello world\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.state", "Cancelled"), NotNil)
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*Possible causes:.*is missing.*")
+}
+
+func (s *TestSuite) TestBadCommand2(c *C) {
+ ech := ""
+ brokenNodeHook = &ech
+
+ api, _, _ := FullRunHelper(c, `{
+ "command": ["echo", "hello world"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+}`, nil, 5, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, "hello world\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.state", "Cancelled"), NotNil)
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*Possible causes:.*is missing.*")
+}
+
+func (s *TestSuite) TestBadCommand3(c *C) {
+ ech := ""
+ brokenNodeHook = &ech
+
+ api, _, _ := FullRunHelper(c, `{
+ "command": ["echo", "hello world"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+}`, nil, 6, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, "hello world\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.state", "Cancelled"), NotNil)
+ c.Check(api.Logs["crunch-run"].String(), Matches, "(?ms).*Possible causes:.*is missing.*")
+}
projects / arvados.git / blobdiff