- <% end %>
- <% end %>
- <% end %>
- </ul>
-
- <ul class="nav navbar-nav navbar-right">
-
- <li>
- <a><i class="rotating loading glyphicon glyphicon-refresh"></i></a>
- </li>
-
- <% if current_user %>
- <!-- XXX placeholder for this when search is implemented
- <li>
- <form class="navbar-form" role="search">
- <div class="input-group" style="width: 220px">
- <input type="text" class="form-control" placeholder="search">
- <span class="input-group-addon"><span class="glyphicon glyphicon-search"></span></span>
- </div>
- </form>
- </li>
- -->
-
- <li class="dropdown notification-menu">
- <a href="#" class="dropdown-toggle" data-toggle="dropdown" id="collections-menu">
- <span class="glyphicon glyphicon-paperclip"></span>
- <span class="badge" id="persistent-selection-count"></span>
- <span class="caret"></span>
- </a>
- <ul class="dropdown-menu" role="menu" id="persistent-selection-list">
- <%= form_tag '/actions' do %>
- <div id="selection-form-content"></div>
- <% end %>
- </ul>
- </li>
-
- <% if current_user.is_active %>
- <li class="dropdown notification-menu">
- <a href="#" class="dropdown-toggle" data-toggle="dropdown" id="notifications-menu">
- <span class="glyphicon glyphicon-envelope"></span>
- <span class="badge badge-alert notification-count"><%= @notification_count %></span>
- <span class="caret"></span>
- </a>
- <ul class="dropdown-menu" role="menu">
- <% if (@notifications || []).length > 0 %>
- <% @notifications.each_with_index do |n, i| %>
- <% if i > 0 %><li class="divider"></li><% end %>
- <li class="notification"><%= n.call(self) %></li>
- <% end %>
- <% else %>
- <li class="notification empty">No notifications.</li>
+
+ <li class="dropdown">
+ <a href="/folders">
+ <i class="fa fa-lg fa-folder-o fa-fw"></i> Folders
+ </a></li>
+ <li><a href="/collections">
+ <i class="fa fa-lg fa-briefcase fa-fw"></i> Collections (data files)
+ </a></li>
+ <li><a href="/jobs">
+ <i class="fa fa-lg fa-tasks fa-fw"></i> Jobs
+ </a></li>
+ <li><a href="/pipeline_instances">
+ <i class="fa fa-lg fa-tasks fa-fw"></i> Pipeline instances
+ </a></li>
+ <li><a href="/pipeline_templates">
+ <i class="fa fa-lg fa-gears fa-fw"></i> Pipeline templates
+ </a></li>
+ <li> </li>
+ <li><a href="/repositories">
+ <i class="fa fa-lg fa-code-fork fa-fw"></i> Repositories
+ </a></li>
+ <li><a href="/virtual_machines">
+ <i class="fa fa-lg fa-terminal fa-fw"></i> Virtual machines
+ </a></li>
+ <li><a href="/humans">
+ <i class="fa fa-lg fa-male fa-fw"></i> Humans
+ </a></li>
+ <li><a href="/specimens">
+ <i class="fa fa-lg fa-flask fa-fw"></i> Specimens
+ </a></li>
+ <li><a href="/traits">
+ <i class="fa fa-lg fa-clipboard fa-fw"></i> Traits
+ </a></li>
+ <li><a href="/links">
+ <i class="fa fa-lg fa-arrows-h fa-fw"></i> Links
+ </a></li>
+ <% if current_user.andand.is_admin %>
+ <li><a href="/users">
+ <i class="fa fa-lg fa-user fa-fw"></i> Users
+ </a></li>