Make sure examples work, lots of wordsmithing and reorganizing for clarity.

[arvados.git] / tools / copy-tutorial / copy-tutorial.sh

diff --git a/tools/copy-tutorial/copy-tutorial.sh b/tools/copy-tutorial/copy-tutorial.sh
new file mode 100755 (executable)
index 0000000..bdc75da
--- /dev/null
+++ b/tools/copy-tutorial/copy-tutorial.sh
@@ -0,0 +1,25 @@
+#!/bin/sh
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: AGPL-3.0
+
+set -e
+
+if test -z "$1"  ; then
+  echo "$0: Copies Arvados tutorial resources from public data cluster (jutro)"
+  echo "Usage: copy-tutorial.sh <dest>"
+  echo "<dest> is destination cluster configuration that can be found in ~/.config/arvados"
+  exit
+fi
+
+echo "Copying from public data cluster (jutro) to $1"
+
+for a in $(cat $HOME/.config/arvados/$1.conf) ; do export $a ; done
+
+project_uuid=$(arv --format=uuid group create --group '{"name":"User guide resources", "group_class": "project"}')
+
+# Bwa-mem workflow
+arv-copy --src jutro --dst $1 --project-uuid=$project_uuid f141fc27e7cfa7f7b6d208df5e0ee01b+59
+arv-copy --src jutro --dst $1 --project-uuid=$project_uuid jutro-7fd4e-mkmmq53m1ze6apx
+
+echo "Data copied to \"User guide resources\" at $project_uuid"