class CollectionsController < ApplicationController
- skip_around_filter(:thread_with_mandatory_api_token,
+ skip_around_filter(:require_thread_api_token,
only: [:show_file, :show_file_links])
skip_before_filter(:find_object_by_uuid,
only: [:provenance, :show_file, :show_file_links])
+ # We depend on show_file to display the user agreement:
+ skip_before_filter :check_user_agreements, only: [:show_file]
RELATION_LIMIT = 5
def show_pane_list
- %w(Files Attributes Metadata Provenance_graph Used_by JSON API)
+ %w(Files Provenance_graph Used_by Advanced)
end
def set_persistent
end
end
+ def choose
+ params[:limit] ||= 40
+
+ @filters += [['link_class','=','name'],
+ ['head_uuid','is_a','arvados#collection']]
+
+ @objects = Link
+ find_objects_for_index
+
+ @name_links = @objects
+
+ @objects = Collection.
+ filter([['uuid','in',@name_links.collect(&:head_uuid)]])
+ preload_links_for_objects @objects.to_a
+ super
+ end
+
def index
if params[:search].andand.length.andand > 0
tags = Link.where(any: ['contains', params[:search]])
info[:links] << link
end
@request_url = request.url
+
+ render_index
end
def show_file_links
Thread.current[:reader_tokens] = [params[:reader_token]]
- find_object_by_uuid
+ return if false.equal?(find_object_by_uuid)
render layout: false
end
end
def sharing_scopes
- ["GET /arvados/v1/collections/#{@object.uuid}", "GET /arvados/v1/keep_services"]
+ ["GET /arvados/v1/collections/#{@object.uuid}", "GET /arvados/v1/collections/#{@object.uuid}/", "GET /arvados/v1/keep_services/accessible"]
end
def search_scopes
end
@output_of = jobs_with.call(output: @object.uuid)
@log_of = jobs_with.call(log: @object.uuid)
- folder_links = Link.limit(RELATION_LIMIT).order("modified_at DESC")
+ @project_links = Link.limit(RELATION_LIMIT).order("modified_at DESC")
.where(head_uuid: @object.uuid, link_class: 'name').results
- folder_hash = Group.where(uuid: folder_links.map(&:tail_uuid)).to_hash
- @folders = folder_links.map { |link| folder_hash[link.tail_uuid] }
+ project_hash = Group.where(uuid: @project_links.map(&:tail_uuid)).to_hash
+ @projects = project_hash.values
@permissions = Link.limit(RELATION_LIMIT).order("modified_at DESC")
.where(head_uuid: @object.uuid, link_class: 'permission',
name: 'can_read').results
.results.any?
@search_sharing = search_scopes
end
- @prov_svg = ProvenanceHelper::create_provenance_graph(@object.provenance, "provenance_svg",
- {:request => request,
- :direction => :bottom_up,
- :combine_jobs => :script_only}) rescue nil
- @used_by_svg = ProvenanceHelper::create_provenance_graph(@object.used_by, "used_by_svg",
- {:request => request,
- :direction => :top_down,
- :combine_jobs => :script_only,
- :pdata_only => true}) rescue nil
+
+ if params["tab_pane"] == "Provenance_graph"
+ @prov_svg = ProvenanceHelper::create_provenance_graph(@object.provenance, "provenance_svg",
+ {:request => request,
+ :direction => :bottom_up,
+ :combine_jobs => :script_only}) rescue nil
+ end
+ if params["tab_pane"] == "Used_by"
+ @used_by_svg = ProvenanceHelper::create_provenance_graph(@object.used_by, "used_by_svg",
+ {:request => request,
+ :direction => :top_down,
+ :combine_jobs => :script_only,
+ :pdata_only => true}) rescue nil
+ end
+ super
end
def sharing_popup
helper_method :download_link
def download_link
- collections_url + "/download/#{@object.uuid}/#{@search_sharing.first.api_token}"
+ collections_url + "/download/#{@object.uuid}/#{@search_sharing.first.api_token}/"
end
def share
# error we encounter, and return nil.
most_specific_error = [401]
token_list.each do |api_token|
- using_specific_api_token(api_token) do
- begin
+ begin
+ using_specific_api_token(api_token) do
yield
return api_token
- rescue ArvadosApiClient::NotLoggedInException => error
- status = 401
- rescue => error
- status = (error.message =~ /\[API: (\d+)\]$/) ? $1.to_i : nil
- raise unless [401, 403, 404].include?(status)
end
- if status >= most_specific_error.first
- most_specific_error = [status, error]
+ rescue ArvadosApiClient::ApiError => error
+ if error.api_status >= most_specific_error.first
+ most_specific_error = [error.api_status, error]
end
end
end