+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
import logging
import re
import copy
import ruamel.yaml as yaml
import arvados.collection
+from arvados.errors import ApiError
from .arvdocker import arv_docker_get_image
from .runner import Runner, arvados_jobs_image, packed_workflow, upload_workflow_collection, trim_anonymous_location
if not self.arvrunner.ignore_docker_for_reuse:
filters.append(["docker_image_locator", "in docker", runtime_constraints["docker_image"]])
+ enable_reuse = kwargs.get("enable_reuse", True)
+ if enable_reuse:
+ reuse_req, _ = get_feature(self, "http://arvados.org/cwl#ReuseRequirement")
+ if reuse_req:
+ enable_reuse = reuse_req["enableReuse"]
+
try:
with Perf(metrics, "create %s" % self.name):
response = self.arvrunner.api.jobs().create(
"runtime_constraints": runtime_constraints
},
filters=filters,
- find_or_create=kwargs.get("enable_reuse", True)
+ find_or_create=enable_reuse
).execute(num_retries=self.arvrunner.num_retries)
self.arvrunner.processes[response["uuid"]] = self
if response["state"] == "Complete":
logger.info("%s reused job %s", self.arvrunner.label(self), response["uuid"])
+ # Give read permission to the desired project on reused jobs
+ if response["owner_uuid"] != self.arvrunner.project_uuid:
+ try:
+ self.arvrunner.api.links().create(body={
+ 'link_class': 'permission',
+ 'name': 'can_read',
+ 'tail_uuid': self.arvrunner.project_uuid,
+ 'head_uuid': response["uuid"],
+ }).execute(num_retries=self.arvrunner.num_retries)
+ except ApiError as e:
+ # The user might not have "manage" access on the job: log
+ # a message and continue.
+ logger.info("Creating read permission on job %s: %s",
+ response["uuid"],
+ e)
+
with Perf(metrics, "done %s" % self.name):
self.done(response)
else:
find_or_create=self.enable_reuse
).execute(num_retries=self.arvrunner.num_retries)
- if self.enable_reuse:
- reused_collections = [('Output', job['output']), ('Log', job['log'])]
- for col_type, pdh in [(n, p) for n, p in reused_collections if p]:
- # When reusing jobs, copy its output/log collection to the desired project
- c = arvados.collection.Collection(pdh,
- api_client=self.arvrunner.api,
- keep_client=self.arvrunner.keep_client,
- num_retries=self.arvrunner.num_retries)
- c.save_new(name="{} of {}".format(col_type, self.name),
- owner_uuid=self.arvrunner.project_uuid,
- ensure_unique_name=True,
- num_retries=self.arvrunner.num_retries)
- logger.info("Copied reused job's %s to collection %s",
- col_type.lower(),
- c.manifest_locator())
-
for k,v in job_spec["script_parameters"].items():
if v is False or v is None or isinstance(v, dict):
job_spec["script_parameters"][k] = {"value": v}