@@ -6,7+6,7 @@ title: "Writing a multi-step pipeline"
A pipeline in Arvados is a collection of crunch scripts, in which the output from one script may be used as the input to another script.
A pipeline in Arvados is a collection of crunch scripts, in which the output from one script may be used as the input to another script.
-*This tutorial assumes that you are "logged into an Arvados VM instance":{{site.baseurl}}/user/getting_started/ssh-access.html#login, and have a "working environment.":{{site.baseurl}}/user/getting_started/check-environment.html*
+{% include 'tutorial_expectations' %}
This tutorial uses *@you@* to denote your username. Replace *@you@* with your user name in all the following examples.
This tutorial uses *@you@* to denote your username. Replace *@you@* with your user name in all the following examples.
@@ -16,7+16,7 @@ Our second script will filter the output of @hash.py@ and only include hashes th
<notextile> {% code '0_filter_py' as python %} </notextile>
<notextile> {% code '0_filter_py' as python %} </notextile>
* @"output_of"@ indicates that the @output@ of the @do_hash@ component should be used as the @"input"@ of @do_filter@. Arvados uses these dependencies between jobs to automatically determine the correct order to run them.
* @"output_of"@ indicates that the @output@ of the @do_hash@ component should be used as the @"input"@ of @do_filter@. Arvados uses these dependencies between jobs to automatically determine the correct order to run them.
-(Your shell should automatically fill in @$USER@ with your login name. The JSON that gets saved should have @"repository"@ pointed at your personal git repository.)
+(Your shell should automatically fill in @$USER@ with your login name. The JSON that gets saved should have @"repository"@ pointed at your personal Git repository.)
Now, use @arv pipeline_template create@ to register your pipeline template in Arvados:
Now, use @arv pipeline_template create@ to register your pipeline template in Arvados:
@@ -75,6+75,6 @@ Now, use @arv pipeline_template create@ to register your pipeline template in Ar
</code></pre>
</notextile>
</code></pre>
</notextile>
-Your new pipeline template will appear on the Workbench "Compute %(rarr)→% Pipeline templates":https://{{ site.arvados_workbench_host }}/pipeline_instances page.
+Your new pipeline template will appear on the Workbench "Compute %(rarr)→% Pipeline templates":https://{{ site.arvados_workbench_host }}/pipeline_templates page.
For more information and examples for writing pipelines, see the "pipeline template reference":{{site.baseurl}}/api/schema/PipelineTemplate.html
For more information and examples for writing pipelines, see the "pipeline template reference":{{site.baseurl}}/api/schema/PipelineTemplate.html