# --progress/--no-progress/--batch-progress and --resume/--no-resume.
arg_parser = argparse.ArgumentParser(
description="Upload or list Docker images in Arvados",
- parents=[keepdocker_parser, arv_put.run_opts])
+ parents=[keepdocker_parser, arv_put.run_opts, arv_cmd.retry_opt])
class DockerError(Exception):
pass
image_file = open(file_path, 'w+b' if need_save else 'rb')
return image_file, need_save
-def make_link(link_class, link_name, **link_attrs):
+def make_link(api_client, num_retries, link_class, link_name, **link_attrs):
link_attrs.update({'link_class': link_class, 'name': link_name})
- return arvados.api('v1').links().create(body=link_attrs).execute()
+ return api_client.links().create(body=link_attrs).execute(
+ num_retries=num_retries)
def ptimestamp(t):
s = t.split(".")
t = s[0] + s[1][-1:]
return datetime.datetime.strptime(t, "%Y-%m-%dT%H:%M:%SZ")
-def list_images_in_arv():
- existing_links = arvados.api('v1').links().list(filters=[['link_class', 'in', ['docker_image_hash', 'docker_image_repo+tag']]]).execute()['items']
+def list_images_in_arv(api_client, num_retries):
+ existing_links = api_client.links().list(
+ filters=[['link_class', 'in', ['docker_image_hash', 'docker_image_repo+tag']]]
+ ).execute(num_retries=num_retries)['items']
images = {}
for link in existing_links:
collection_uuid = link["head_uuid"]
def main(arguments=None):
args = arg_parser.parse_args(arguments)
+ api = arvados.api('v1')
if args.image is None or args.image == 'images':
- list_images_in_arv()
+ list_images_in_arv(api, args.retries)
sys.exit(0)
# Pull the image if requested, unless the image is specified as a hash
else:
collection_name = args.name
- api = arvados.api('v1')
-
if not args.force:
# Check if this image is already in Arvados.
# Project where everything should be owned
- parent_project_uuid = args.project_uuid if args.project_uuid else api.users().current().execute()['uuid']
+ if args.project_uuid:
+ parent_project_uuid = args.project_uuid
+ else:
+ parent_project_uuid = api.users().current().execute(
+ num_retries=args.retries)['uuid']
# Find image hash tags
existing_links = api.links().list(
filters=[['link_class', '=', 'docker_image_hash'],
- ['name', '=', image_hash]]).execute()['items']
+ ['name', '=', image_hash]]
+ ).execute(num_retries=args.retries)['items']
if existing_links:
# get readable collections
collections = api.collections().list(
filters=[['uuid', 'in', [link['head_uuid'] for link in existing_links]]],
- select=["uuid", "owner_uuid", "name", "manifest_text"]).execute()['items']
+ select=["uuid", "owner_uuid", "name", "manifest_text"]
+ ).execute(num_retries=args.retries)['items']
if collections:
# check for repo+tag links on these collections
existing_repo_tag = (api.links().list(
filters=[['link_class', '=', 'docker_image_repo+tag'],
['name', '=', image_repo_tag],
- ['head_uuid', 'in', collections]]).execute()['items']) if image_repo_tag else []
+ ['head_uuid', 'in', collections]]
+ ).execute(num_retries=args.retries)['items']) if image_repo_tag else []
# Filter on elements owned by the parent project
owned_col = [c for c in collections if c['owner_uuid'] == parent_project_uuid]
coll_uuid = owned_col[0]['uuid']
else:
# create new collection owned by the project
- coll_uuid = api.collections().create(body={"manifest_text": collections[0]['manifest_text'],
- "name": collection_name,
- "owner_uuid": parent_project_uuid},
- ensure_unique_name=True).execute()['uuid']
+ coll_uuid = api.collections().create(
+ body={"manifest_text": collections[0]['manifest_text'],
+ "name": collection_name,
+ "owner_uuid": parent_project_uuid},
+ ensure_unique_name=True
+ ).execute(num_retries=args.retries)['uuid']
link_base = {'owner_uuid': parent_project_uuid,
'head_uuid': coll_uuid }
if not owned_img:
# create image link owned by the project
- make_link('docker_image_hash', image_hash, **link_base)
+ make_link(api, args.retries,
+ 'docker_image_hash', image_hash, **link_base)
if not owned_rep and image_repo_tag:
# create repo+tag link owned by the project
- make_link('docker_image_repo+tag', image_repo_tag, **link_base)
+ make_link(api, args.retries, 'docker_image_repo+tag',
+ image_repo_tag, **link_base)
print(coll_uuid)
if args.project_uuid is not None:
link_base['owner_uuid'] = args.project_uuid
- make_link('docker_image_hash', image_hash, **link_base)
+ make_link(api, args.retries, 'docker_image_hash', image_hash, **link_base)
if image_repo_tag:
- make_link('docker_image_repo+tag', image_repo_tag,
- **link_base)
+ make_link(api, args.retries,
+ 'docker_image_repo+tag', image_repo_tag, **link_base)
# Clean up.
image_file.close()
projects / arvados.git / blobdiff