+require "arvados/keep"
+
class CollectionsController < ApplicationController
include ActionController::Live
usable_token = find_usable_token(tokens) do
coll = Collection.find(params[:uuid])
end
+
+ file_name = params[:file].andand.sub(/^(\.\/|\/|)/, './')
if usable_token.nil?
return # Response already rendered.
- elsif params[:file].nil? or not coll.manifest.has_file?(params[:file])
+ elsif file_name.nil? or not coll.manifest.has_file?(file_name)
return render_not_found
end
end
end
+ def find_object_by_uuid
+ if not Keep::Locator.parse params[:id]
+ super
+ end
+ end
+
def show
return super if !@object
if current_user
- jobs_with = lambda do |conds|
- Job.limit(RELATION_LIMIT).where(conds)
- .results.sort_by { |j| j.finished_at || j.created_at }
- end
- @output_of = jobs_with.call(output: @object.portable_data_hash)
- @log_of = jobs_with.call(log: @object.portable_data_hash)
- @project_links = Link.limit(RELATION_LIMIT).order("modified_at DESC")
- .where(head_uuid: @object.uuid, link_class: 'name').results
- project_hash = Group.where(uuid: @project_links.map(&:tail_uuid)).to_hash
- @projects = project_hash.values
-
- if @object.uuid.match /[0-9a-f]{32}/
- @same_pdh = Collection.filter([["portable_data_hash", "=", @object.portable_data_hash]])
- owners = @same_pdh.map {|s| s.owner_uuid}.to_a
+ if Keep::Locator.parse params["uuid"]
+ @same_pdh = Collection.filter([["portable_data_hash", "=", @object.portable_data_hash]]).limit(1000)
+ if @same_pdh.results.size == 1
+ redirect_to collection_path(@same_pdh[0]["uuid"])
+ return
+ end
+ owners = @same_pdh.map(&:owner_uuid).to_a.uniq
preload_objects_for_dataclass Group, owners
preload_objects_for_dataclass User, owners
+ render 'hash_matches'
+ return
+ else
+ jobs_with = lambda do |conds|
+ Job.limit(RELATION_LIMIT).where(conds)
+ .results.sort_by { |j| j.finished_at || j.created_at }
+ end
+ @output_of = jobs_with.call(output: @object.portable_data_hash)
+ @log_of = jobs_with.call(log: @object.portable_data_hash)
+ @project_links = Link.limit(RELATION_LIMIT).order("modified_at DESC")
+ .where(head_uuid: @object.uuid, link_class: 'name').results
+ project_hash = Group.where(uuid: @project_links.map(&:tail_uuid)).to_hash
+ @projects = project_hash.values
+
+ @permissions = Link.limit(RELATION_LIMIT).order("modified_at DESC")
+ .where(head_uuid: @object.uuid, link_class: 'permission',
+ name: 'can_read').results
+ @logs = Log.limit(RELATION_LIMIT).order("created_at DESC")
+ .where(object_uuid: @object.uuid).results
+ @is_persistent = Link.limit(1)
+ .where(head_uuid: @object.uuid, tail_uuid: current_user.uuid,
+ link_class: 'resources', name: 'wants')
+ .results.any?
+ @search_sharing = search_scopes
+
+ if params["tab_pane"] == "Provenance_graph"
+ @prov_svg = ProvenanceHelper::create_provenance_graph(@object.provenance, "provenance_svg",
+ {:request => request,
+ :direction => :bottom_up,
+ :combine_jobs => :script_only}) rescue nil
+ end
+ if params["tab_pane"] == "Used_by"
+ @used_by_svg = ProvenanceHelper::create_provenance_graph(@object.used_by, "used_by_svg",
+ {:request => request,
+ :direction => :top_down,
+ :combine_jobs => :script_only,
+ :pdata_only => true}) rescue nil
+ end
end
-
- @permissions = Link.limit(RELATION_LIMIT).order("modified_at DESC")
- .where(head_uuid: @object.uuid, link_class: 'permission',
- name: 'can_read').results
- @logs = Log.limit(RELATION_LIMIT).order("created_at DESC")
- .where(object_uuid: @object.uuid).results
- @is_persistent = Link.limit(1)
- .where(head_uuid: @object.uuid, tail_uuid: current_user.uuid,
- link_class: 'resources', name: 'wants')
- .results.any?
- @search_sharing = search_scopes
- end
-
- if params["tab_pane"] == "Provenance_graph"
- @prov_svg = ProvenanceHelper::create_provenance_graph(@object.provenance, "provenance_svg",
- {:request => request,
- :direction => :bottom_up,
- :combine_jobs => :script_only}) rescue nil
- end
- if params["tab_pane"] == "Used_by"
- @used_by_svg = ProvenanceHelper::create_provenance_graph(@object.used_by, "used_by_svg",
- {:request => request,
- :direction => :top_down,
- :combine_jobs => :script_only,
- :pdata_only => true}) rescue nil
end
super
end
most_specific_error = [401]
token_list.each do |api_token|
begin
- using_specific_api_token(api_token) do
+ # We can't load the corresponding user, because the token may not
+ # be scoped for that.
+ using_specific_api_token(api_token, load_user: false) do
yield
return api_token
end
env['ARVADOS_API_HOST_INSECURE'] = "true" if Rails.configuration.arvados_insecure_https
bytesleft = @opts[:maxbytes].andand.to_i || 2**16
- IO.popen([env, 'arv-get', "#{@opts[:uuid]}/#{@opts[:file]}"],
- 'rb') do |io|
- while bytesleft > 0 && (buf = io.read(bytesleft)) != nil
- # shrink the bytesleft count, if we were given a
- # maximum byte count to read
- if @opts.include? :maxbytes
- bytesleft = bytesleft - buf.length
- end
- yield buf
+ io = IO.popen([env, 'arv-get', "#{@opts[:uuid]}/#{@opts[:file]}"], 'rb')
+ while bytesleft > 0 && (buf = io.read([bytesleft, 2**16].min)) != nil
+ # shrink the bytesleft count, if we were given a maximum byte
+ # count to read
+ if @opts.include? :maxbytes
+ bytesleft = bytesleft - buf.length
end
+ yield buf
end
+ io.close
+ # "If ios is opened by IO.popen, close sets $?."
+ # http://www.ruby-doc.org/core-2.1.3/IO.html#method-i-close
Rails.logger.warn("#{@opts[:uuid]}/#{@opts[:file]}: #{$?}") if $? != 0
end
end
projects / arvados.git / blobdiff