20660: Add devtools::check to run_test.R

[arvados.git] / sdk / R / man / Arvados.Rd

diff --git a/sdk/R/man/Arvados.Rd b/sdk/R/man/Arvados.Rd
index d028d0a07856392e0d43bcf8752130f4539490ef..924bfeae9befad890ca358bfacc85a80442e8b69 100644 (file)
--- a/sdk/R/man/Arvados.Rd
+++ b/sdk/R/man/Arvados.Rd
@@ -18,260 +18,316 @@ arv <- Arvados$new(authToken = "ARVADOS_API_TOKEN", hostName = "ARVADOS_API_HOST
 ## Method `Arvados$project_exist`\r
 ## ------------------------------------------------\r
 \r
-arv$project_exist(uuid = projectUUID)\r
+\dontrun{\r
+arv$project_exist(uuid = "projectUUID")\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$project_get`\r
 ## ------------------------------------------------\r
 \r
-project <- arv$project_get(uuid = projectUUID)\r
+\dontrun{\r
+project <- arv$project_get(uuid = 'projectUUID')\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$project_create`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 Properties <- list() # should contain a list of new properties to be added\r
 new_project <- arv$project_create(name = "project name", description = "project description", owner_uuid = "project UUID", properties = NULL, ensureUniqueName = "false")\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$project_properties_set`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 Properties <- list() # should contain a list of new properties to be added\r
 arv$project_properties_set(Properties, uuid)\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$project_properties_append`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 newProperties <- list() # should contain a list of new properties to be added\r
 arv$project_properties_append(properties = newProperties, uuid)\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$project_properties_get`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 arv$project_properties_get(projectUUID)\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$project_properties_delete`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 Properties <- list() # should contain a list of new properties to be added\r
 arv$project_properties_delete(Properties,  projectUUID)\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$project_update`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 newProperties <- list() # should contain a list of new properties to be added\r
 arv$project_update(name = "new project name", properties = newProperties, uuid = projectUUID)\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$project_list`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 listOfprojects <- arv$project_list(list(list("owner_uuid", "=", projectUUID))) # Sample query which show projects within the project of a given UUID\r
+}\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$project_delete`\r
+## ------------------------------------------------\r
+\r
+\dontrun{\r
+arv$project_delete(uuid = 'projectUUID')\r
+}\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$collections_get`\r
+## ------------------------------------------------\r
+\r
+\dontrun{\r
+collection <- arv$collections_get(uuid = collectionUUID)\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$collections_create`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 Properties <- list() # should contain a list of new properties to be added\r
 arv$collections_create(name = "collectionTitle", description = "collectionDescription", ownerUUID = "collectionOwner", properties = Properties)\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$collections_update`\r
 ## ------------------------------------------------\r
 \r
-collection <- arv$collections_create(name = "newCollectionTitle", description = "newCollectionDescription", ownerUUID = "collectionOwner", properties = NULL)\r
+\dontrun{\r
+collection <- arv$collections_update(name = "newCollectionTitle", description = "newCollectionDescription", ownerUUID = "collectionOwner", properties = NULL, uuid = "collectionUUID")\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$collections_delete`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 arv$collection_delete(collectionUUID)\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$collections_provenance`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 collection <- arv$collections_provenance(collectionUUID)\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$collections_trash`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 arv$collections_trash(collectionUUID)\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$collections_untrash`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 arv$collections_untrash(collectionUUID)\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$collections_list`\r
 ## ------------------------------------------------\r
 \r
-collectionList <- arv$collections.list(list(list("name", "=", "Example")))\r
+\dontrun{\r
+collectionList <- arv$collections_list(list(list("name", "=", "Example")))\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$project_permission_give`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 arv$project_permission_give(type = "can_read", uuid = objectUUID, user = userUUID)\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$project_permission_refuse`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 arv$project_permission_refuse(type = "can_read", uuid = objectUUID, user = userUUID)\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$project_permission_update`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 arv$project_permission_update(typeOld = "can_read", typeNew = "can_write", uuid = objectUUID, user = userUUID)\r
+}\r
 \r
 ## ------------------------------------------------\r
 ## Method `Arvados$project_permission_check`\r
 ## ------------------------------------------------\r
 \r
+\dontrun{\r
 arv$project_permission_check(type = "can_read", uuid = objectUUID, user = userUUID)\r
 }\r
+}\r
 \section{Methods}{\r
 \subsection{Public methods}{\r
 \itemize{\r
-\item \href{#method-new}{\code{Arvados$new()}}\r
-\item \href{#method-project_exist}{\code{Arvados$project_exist()}}\r
-\item \href{#method-project_get}{\code{Arvados$project_get()}}\r
-\item \href{#method-project_create}{\code{Arvados$project_create()}}\r
-\item \href{#method-project_properties_set}{\code{Arvados$project_properties_set()}}\r
-\item \href{#method-project_properties_append}{\code{Arvados$project_properties_append()}}\r
-\item \href{#method-project_properties_get}{\code{Arvados$project_properties_get()}}\r
-\item \href{#method-project_properties_delete}{\code{Arvados$project_properties_delete()}}\r
-\item \href{#method-project_update}{\code{Arvados$project_update()}}\r
-\item \href{#method-project_list}{\code{Arvados$project_list()}}\r
-\item \href{#method-project_delete}{\code{Arvados$project_delete()}}\r
-\item \href{#method-api_clients_get}{\code{Arvados$api_clients_get()}}\r
-\item \href{#method-api_clients_create}{\code{Arvados$api_clients_create()}}\r
-\item \href{#method-api_clients_update}{\code{Arvados$api_clients_update()}}\r
-\item \href{#method-api_clients_delete}{\code{Arvados$api_clients_delete()}}\r
-\item \href{#method-api_clients_list}{\code{Arvados$api_clients_list()}}\r
-\item \href{#method-api_client_authorizations_get}{\code{Arvados$api_client_authorizations_get()}}\r
-\item \href{#method-api_client_authorizations_create}{\code{Arvados$api_client_authorizations_create()}}\r
-\item \href{#method-api_client_authorizations_update}{\code{Arvados$api_client_authorizations_update()}}\r
-\item \href{#method-api_client_authorizations_delete}{\code{Arvados$api_client_authorizations_delete()}}\r
-\item \href{#method-api_client_authorizations_create_system_auth}{\code{Arvados$api_client_authorizations_create_system_auth()}}\r
-\item \href{#method-api_client_authorizations_current}{\code{Arvados$api_client_authorizations_current()}}\r
-\item \href{#method-api_client_authorizations_list}{\code{Arvados$api_client_authorizations_list()}}\r
-\item \href{#method-authorized_keys_get}{\code{Arvados$authorized_keys_get()}}\r
-\item \href{#method-authorized_keys_create}{\code{Arvados$authorized_keys_create()}}\r
-\item \href{#method-authorized_keys_update}{\code{Arvados$authorized_keys_update()}}\r
-\item \href{#method-authorized_keys_delete}{\code{Arvados$authorized_keys_delete()}}\r
-\item \href{#method-authorized_keys_list}{\code{Arvados$authorized_keys_list()}}\r
-\item \href{#method-collections_get}{\code{Arvados$collections_get()}}\r
-\item \href{#method-collections_create}{\code{Arvados$collections_create()}}\r
-\item \href{#method-collections_update}{\code{Arvados$collections_update()}}\r
-\item \href{#method-collections_delete}{\code{Arvados$collections_delete()}}\r
-\item \href{#method-collections_provenance}{\code{Arvados$collections_provenance()}}\r
-\item \href{#method-collections_used_by}{\code{Arvados$collections_used_by()}}\r
-\item \href{#method-collections_trash}{\code{Arvados$collections_trash()}}\r
-\item \href{#method-collections_untrash}{\code{Arvados$collections_untrash()}}\r
-\item \href{#method-collections_list}{\code{Arvados$collections_list()}}\r
-\item \href{#method-containers_get}{\code{Arvados$containers_get()}}\r
-\item \href{#method-containers_create}{\code{Arvados$containers_create()}}\r
-\item \href{#method-containers_update}{\code{Arvados$containers_update()}}\r
-\item \href{#method-containers_delete}{\code{Arvados$containers_delete()}}\r
-\item \href{#method-containers_auth}{\code{Arvados$containers_auth()}}\r
-\item \href{#method-containers_lock}{\code{Arvados$containers_lock()}}\r
-\item \href{#method-containers_unlock}{\code{Arvados$containers_unlock()}}\r
-\item \href{#method-containers_secret_mounts}{\code{Arvados$containers_secret_mounts()}}\r
-\item \href{#method-containers_current}{\code{Arvados$containers_current()}}\r
-\item \href{#method-containers_list}{\code{Arvados$containers_list()}}\r
-\item \href{#method-container_requests_get}{\code{Arvados$container_requests_get()}}\r
-\item \href{#method-container_requests_create}{\code{Arvados$container_requests_create()}}\r
-\item \href{#method-container_requests_update}{\code{Arvados$container_requests_update()}}\r
-\item \href{#method-container_requests_delete}{\code{Arvados$container_requests_delete()}}\r
-\item \href{#method-container_requests_list}{\code{Arvados$container_requests_list()}}\r
-\item \href{#method-groups_get}{\code{Arvados$groups_get()}}\r
-\item \href{#method-groups_create}{\code{Arvados$groups_create()}}\r
-\item \href{#method-groups_update}{\code{Arvados$groups_update()}}\r
-\item \href{#method-groups_delete}{\code{Arvados$groups_delete()}}\r
-\item \href{#method-groups_contents}{\code{Arvados$groups_contents()}}\r
-\item \href{#method-groups_shared}{\code{Arvados$groups_shared()}}\r
-\item \href{#method-groups_trash}{\code{Arvados$groups_trash()}}\r
-\item \href{#method-groups_untrash}{\code{Arvados$groups_untrash()}}\r
-\item \href{#method-groups_list}{\code{Arvados$groups_list()}}\r
-\item \href{#method-keep_services_get}{\code{Arvados$keep_services_get()}}\r
-\item \href{#method-keep_services_create}{\code{Arvados$keep_services_create()}}\r
-\item \href{#method-keep_services_update}{\code{Arvados$keep_services_update()}}\r
-\item \href{#method-keep_services_delete}{\code{Arvados$keep_services_delete()}}\r
-\item \href{#method-keep_services_accessible}{\code{Arvados$keep_services_accessible()}}\r
-\item \href{#method-keep_services_list}{\code{Arvados$keep_services_list()}}\r
-\item \href{#method-project_permission_give}{\code{Arvados$project_permission_give()}}\r
-\item \href{#method-project_permission_refuse}{\code{Arvados$project_permission_refuse()}}\r
-\item \href{#method-project_permission_update}{\code{Arvados$project_permission_update()}}\r
-\item \href{#method-project_permission_check}{\code{Arvados$project_permission_check()}}\r
-\item \href{#method-links_get}{\code{Arvados$links_get()}}\r
-\item \href{#method-links_create}{\code{Arvados$links_create()}}\r
-\item \href{#method-links_update}{\code{Arvados$links_update()}}\r
-\item \href{#method-links_delete}{\code{Arvados$links_delete()}}\r
-\item \href{#method-links_list}{\code{Arvados$links_list()}}\r
-\item \href{#method-links_get_permissions}{\code{Arvados$links_get_permissions()}}\r
-\item \href{#method-logs_get}{\code{Arvados$logs_get()}}\r
-\item \href{#method-logs_create}{\code{Arvados$logs_create()}}\r
-\item \href{#method-logs_update}{\code{Arvados$logs_update()}}\r
-\item \href{#method-logs_delete}{\code{Arvados$logs_delete()}}\r
-\item \href{#method-logs_list}{\code{Arvados$logs_list()}}\r
-\item \href{#method-users_get}{\code{Arvados$users_get()}}\r
-\item \href{#method-users_create}{\code{Arvados$users_create()}}\r
-\item \href{#method-users_update}{\code{Arvados$users_update()}}\r
-\item \href{#method-users_delete}{\code{Arvados$users_delete()}}\r
-\item \href{#method-users_current}{\code{Arvados$users_current()}}\r
-\item \href{#method-users_system}{\code{Arvados$users_system()}}\r
-\item \href{#method-users_activate}{\code{Arvados$users_activate()}}\r
-\item \href{#method-users_setup}{\code{Arvados$users_setup()}}\r
-\item \href{#method-users_unsetup}{\code{Arvados$users_unsetup()}}\r
-\item \href{#method-users_merge}{\code{Arvados$users_merge()}}\r
-\item \href{#method-users_list}{\code{Arvados$users_list()}}\r
-\item \href{#method-repositories_get}{\code{Arvados$repositories_get()}}\r
-\item \href{#method-repositories_create}{\code{Arvados$repositories_create()}}\r
-\item \href{#method-repositories_update}{\code{Arvados$repositories_update()}}\r
-\item \href{#method-repositories_delete}{\code{Arvados$repositories_delete()}}\r
-\item \href{#method-repositories_get_all_permissions}{\code{Arvados$repositories_get_all_permissions()}}\r
-\item \href{#method-repositories_list}{\code{Arvados$repositories_list()}}\r
-\item \href{#method-virtual_machines_get}{\code{Arvados$virtual_machines_get()}}\r
-\item \href{#method-virtual_machines_create}{\code{Arvados$virtual_machines_create()}}\r
-\item \href{#method-virtual_machines_update}{\code{Arvados$virtual_machines_update()}}\r
-\item \href{#method-virtual_machines_delete}{\code{Arvados$virtual_machines_delete()}}\r
-\item \href{#method-virtual_machines_logins}{\code{Arvados$virtual_machines_logins()}}\r
-\item \href{#method-virtual_machines_get_all_logins}{\code{Arvados$virtual_machines_get_all_logins()}}\r
-\item \href{#method-virtual_machines_list}{\code{Arvados$virtual_machines_list()}}\r
-\item \href{#method-workflows_get}{\code{Arvados$workflows_get()}}\r
-\item \href{#method-workflows_create}{\code{Arvados$workflows_create()}}\r
-\item \href{#method-workflows_update}{\code{Arvados$workflows_update()}}\r
-\item \href{#method-workflows_delete}{\code{Arvados$workflows_delete()}}\r
-\item \href{#method-workflows_list}{\code{Arvados$workflows_list()}}\r
-\item \href{#method-user_agreements_get}{\code{Arvados$user_agreements_get()}}\r
-\item \href{#method-user_agreements_create}{\code{Arvados$user_agreements_create()}}\r
-\item \href{#method-user_agreements_update}{\code{Arvados$user_agreements_update()}}\r
-\item \href{#method-user_agreements_delete}{\code{Arvados$user_agreements_delete()}}\r
-\item \href{#method-user_agreements_signatures}{\code{Arvados$user_agreements_signatures()}}\r
-\item \href{#method-user_agreements_sign}{\code{Arvados$user_agreements_sign()}}\r
-\item \href{#method-user_agreements_list}{\code{Arvados$user_agreements_list()}}\r
-\item \href{#method-user_agreements_new}{\code{Arvados$user_agreements_new()}}\r
-\item \href{#method-configs_get}{\code{Arvados$configs_get()}}\r
-\item \href{#method-getHostName}{\code{Arvados$getHostName()}}\r
-\item \href{#method-getToken}{\code{Arvados$getToken()}}\r
-\item \href{#method-setRESTService}{\code{Arvados$setRESTService()}}\r
-\item \href{#method-getRESTService}{\code{Arvados$getRESTService()}}\r
-}\r
-}\r
-\if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-new"></a>}}\r
-\if{latex}{\out{\hypertarget{method-new}{}}}\r
+\item \href{#method-Arvados-new}{\code{Arvados$new()}}\r
+\item \href{#method-Arvados-project_exist}{\code{Arvados$project_exist()}}\r
+\item \href{#method-Arvados-project_get}{\code{Arvados$project_get()}}\r
+\item \href{#method-Arvados-project_create}{\code{Arvados$project_create()}}\r
+\item \href{#method-Arvados-project_properties_set}{\code{Arvados$project_properties_set()}}\r
+\item \href{#method-Arvados-project_properties_append}{\code{Arvados$project_properties_append()}}\r
+\item \href{#method-Arvados-project_properties_get}{\code{Arvados$project_properties_get()}}\r
+\item \href{#method-Arvados-project_properties_delete}{\code{Arvados$project_properties_delete()}}\r
+\item \href{#method-Arvados-project_update}{\code{Arvados$project_update()}}\r
+\item \href{#method-Arvados-project_list}{\code{Arvados$project_list()}}\r
+\item \href{#method-Arvados-project_delete}{\code{Arvados$project_delete()}}\r
+\item \href{#method-Arvados-api_clients_get}{\code{Arvados$api_clients_get()}}\r
+\item \href{#method-Arvados-api_clients_create}{\code{Arvados$api_clients_create()}}\r
+\item \href{#method-Arvados-api_clients_update}{\code{Arvados$api_clients_update()}}\r
+\item \href{#method-Arvados-api_clients_delete}{\code{Arvados$api_clients_delete()}}\r
+\item \href{#method-Arvados-api_clients_list}{\code{Arvados$api_clients_list()}}\r
+\item \href{#method-Arvados-api_client_authorizations_get}{\code{Arvados$api_client_authorizations_get()}}\r
+\item \href{#method-Arvados-api_client_authorizations_create}{\code{Arvados$api_client_authorizations_create()}}\r
+\item \href{#method-Arvados-api_client_authorizations_update}{\code{Arvados$api_client_authorizations_update()}}\r
+\item \href{#method-Arvados-api_client_authorizations_delete}{\code{Arvados$api_client_authorizations_delete()}}\r
+\item \href{#method-Arvados-api_client_authorizations_create_system_auth}{\code{Arvados$api_client_authorizations_create_system_auth()}}\r
+\item \href{#method-Arvados-api_client_authorizations_current}{\code{Arvados$api_client_authorizations_current()}}\r
+\item \href{#method-Arvados-api_client_authorizations_list}{\code{Arvados$api_client_authorizations_list()}}\r
+\item \href{#method-Arvados-authorized_keys_get}{\code{Arvados$authorized_keys_get()}}\r
+\item \href{#method-Arvados-authorized_keys_create}{\code{Arvados$authorized_keys_create()}}\r
+\item \href{#method-Arvados-authorized_keys_update}{\code{Arvados$authorized_keys_update()}}\r
+\item \href{#method-Arvados-authorized_keys_delete}{\code{Arvados$authorized_keys_delete()}}\r
+\item \href{#method-Arvados-authorized_keys_list}{\code{Arvados$authorized_keys_list()}}\r
+\item \href{#method-Arvados-collections_get}{\code{Arvados$collections_get()}}\r
+\item \href{#method-Arvados-collections_create}{\code{Arvados$collections_create()}}\r
+\item \href{#method-Arvados-collections_update}{\code{Arvados$collections_update()}}\r
+\item \href{#method-Arvados-collections_delete}{\code{Arvados$collections_delete()}}\r
+\item \href{#method-Arvados-collections_provenance}{\code{Arvados$collections_provenance()}}\r
+\item \href{#method-Arvados-collections_used_by}{\code{Arvados$collections_used_by()}}\r
+\item \href{#method-Arvados-collections_trash}{\code{Arvados$collections_trash()}}\r
+\item \href{#method-Arvados-collections_untrash}{\code{Arvados$collections_untrash()}}\r
+\item \href{#method-Arvados-collections_list}{\code{Arvados$collections_list()}}\r
+\item \href{#method-Arvados-containers_get}{\code{Arvados$containers_get()}}\r
+\item \href{#method-Arvados-containers_create}{\code{Arvados$containers_create()}}\r
+\item \href{#method-Arvados-containers_update}{\code{Arvados$containers_update()}}\r
+\item \href{#method-Arvados-containers_delete}{\code{Arvados$containers_delete()}}\r
+\item \href{#method-Arvados-containers_auth}{\code{Arvados$containers_auth()}}\r
+\item \href{#method-Arvados-containers_lock}{\code{Arvados$containers_lock()}}\r
+\item \href{#method-Arvados-containers_unlock}{\code{Arvados$containers_unlock()}}\r
+\item \href{#method-Arvados-containers_secret_mounts}{\code{Arvados$containers_secret_mounts()}}\r
+\item \href{#method-Arvados-containers_current}{\code{Arvados$containers_current()}}\r
+\item \href{#method-Arvados-containers_list}{\code{Arvados$containers_list()}}\r
+\item \href{#method-Arvados-container_requests_get}{\code{Arvados$container_requests_get()}}\r
+\item \href{#method-Arvados-container_requests_create}{\code{Arvados$container_requests_create()}}\r
+\item \href{#method-Arvados-container_requests_update}{\code{Arvados$container_requests_update()}}\r
+\item \href{#method-Arvados-container_requests_delete}{\code{Arvados$container_requests_delete()}}\r
+\item \href{#method-Arvados-container_requests_list}{\code{Arvados$container_requests_list()}}\r
+\item \href{#method-Arvados-groups_get}{\code{Arvados$groups_get()}}\r
+\item \href{#method-Arvados-groups_create}{\code{Arvados$groups_create()}}\r
+\item \href{#method-Arvados-groups_update}{\code{Arvados$groups_update()}}\r
+\item \href{#method-Arvados-groups_delete}{\code{Arvados$groups_delete()}}\r
+\item \href{#method-Arvados-groups_contents}{\code{Arvados$groups_contents()}}\r
+\item \href{#method-Arvados-groups_shared}{\code{Arvados$groups_shared()}}\r
+\item \href{#method-Arvados-groups_trash}{\code{Arvados$groups_trash()}}\r
+\item \href{#method-Arvados-groups_untrash}{\code{Arvados$groups_untrash()}}\r
+\item \href{#method-Arvados-groups_list}{\code{Arvados$groups_list()}}\r
+\item \href{#method-Arvados-keep_services_get}{\code{Arvados$keep_services_get()}}\r
+\item \href{#method-Arvados-keep_services_create}{\code{Arvados$keep_services_create()}}\r
+\item \href{#method-Arvados-keep_services_update}{\code{Arvados$keep_services_update()}}\r
+\item \href{#method-Arvados-keep_services_delete}{\code{Arvados$keep_services_delete()}}\r
+\item \href{#method-Arvados-keep_services_accessible}{\code{Arvados$keep_services_accessible()}}\r
+\item \href{#method-Arvados-keep_services_list}{\code{Arvados$keep_services_list()}}\r
+\item \href{#method-Arvados-project_permission_give}{\code{Arvados$project_permission_give()}}\r
+\item \href{#method-Arvados-project_permission_refuse}{\code{Arvados$project_permission_refuse()}}\r
+\item \href{#method-Arvados-project_permission_update}{\code{Arvados$project_permission_update()}}\r
+\item \href{#method-Arvados-project_permission_check}{\code{Arvados$project_permission_check()}}\r
+\item \href{#method-Arvados-links_get}{\code{Arvados$links_get()}}\r
+\item \href{#method-Arvados-links_create}{\code{Arvados$links_create()}}\r
+\item \href{#method-Arvados-links_update}{\code{Arvados$links_update()}}\r
+\item \href{#method-Arvados-links_delete}{\code{Arvados$links_delete()}}\r
+\item \href{#method-Arvados-links_list}{\code{Arvados$links_list()}}\r
+\item \href{#method-Arvados-links_get_permissions}{\code{Arvados$links_get_permissions()}}\r
+\item \href{#method-Arvados-logs_get}{\code{Arvados$logs_get()}}\r
+\item \href{#method-Arvados-logs_create}{\code{Arvados$logs_create()}}\r
+\item \href{#method-Arvados-logs_update}{\code{Arvados$logs_update()}}\r
+\item \href{#method-Arvados-logs_delete}{\code{Arvados$logs_delete()}}\r
+\item \href{#method-Arvados-logs_list}{\code{Arvados$logs_list()}}\r
+\item \href{#method-Arvados-users_get}{\code{Arvados$users_get()}}\r
+\item \href{#method-Arvados-users_create}{\code{Arvados$users_create()}}\r
+\item \href{#method-Arvados-users_update}{\code{Arvados$users_update()}}\r
+\item \href{#method-Arvados-users_delete}{\code{Arvados$users_delete()}}\r
+\item \href{#method-Arvados-users_current}{\code{Arvados$users_current()}}\r
+\item \href{#method-Arvados-users_system}{\code{Arvados$users_system()}}\r
+\item \href{#method-Arvados-users_activate}{\code{Arvados$users_activate()}}\r
+\item \href{#method-Arvados-users_setup}{\code{Arvados$users_setup()}}\r
+\item \href{#method-Arvados-users_unsetup}{\code{Arvados$users_unsetup()}}\r
+\item \href{#method-Arvados-users_merge}{\code{Arvados$users_merge()}}\r
+\item \href{#method-Arvados-users_list}{\code{Arvados$users_list()}}\r
+\item \href{#method-Arvados-repositories_get}{\code{Arvados$repositories_get()}}\r
+\item \href{#method-Arvados-repositories_create}{\code{Arvados$repositories_create()}}\r
+\item \href{#method-Arvados-repositories_update}{\code{Arvados$repositories_update()}}\r
+\item \href{#method-Arvados-repositories_delete}{\code{Arvados$repositories_delete()}}\r
+\item \href{#method-Arvados-repositories_get_all_permissions}{\code{Arvados$repositories_get_all_permissions()}}\r
+\item \href{#method-Arvados-repositories_list}{\code{Arvados$repositories_list()}}\r
+\item \href{#method-Arvados-virtual_machines_get}{\code{Arvados$virtual_machines_get()}}\r
+\item \href{#method-Arvados-virtual_machines_create}{\code{Arvados$virtual_machines_create()}}\r
+\item \href{#method-Arvados-virtual_machines_update}{\code{Arvados$virtual_machines_update()}}\r
+\item \href{#method-Arvados-virtual_machines_delete}{\code{Arvados$virtual_machines_delete()}}\r
+\item \href{#method-Arvados-virtual_machines_logins}{\code{Arvados$virtual_machines_logins()}}\r
+\item \href{#method-Arvados-virtual_machines_get_all_logins}{\code{Arvados$virtual_machines_get_all_logins()}}\r
+\item \href{#method-Arvados-virtual_machines_list}{\code{Arvados$virtual_machines_list()}}\r
+\item \href{#method-Arvados-workflows_get}{\code{Arvados$workflows_get()}}\r
+\item \href{#method-Arvados-workflows_create}{\code{Arvados$workflows_create()}}\r
+\item \href{#method-Arvados-workflows_update}{\code{Arvados$workflows_update()}}\r
+\item \href{#method-Arvados-workflows_delete}{\code{Arvados$workflows_delete()}}\r
+\item \href{#method-Arvados-workflows_list}{\code{Arvados$workflows_list()}}\r
+\item \href{#method-Arvados-user_agreements_get}{\code{Arvados$user_agreements_get()}}\r
+\item \href{#method-Arvados-user_agreements_create}{\code{Arvados$user_agreements_create()}}\r
+\item \href{#method-Arvados-user_agreements_update}{\code{Arvados$user_agreements_update()}}\r
+\item \href{#method-Arvados-user_agreements_delete}{\code{Arvados$user_agreements_delete()}}\r
+\item \href{#method-Arvados-user_agreements_signatures}{\code{Arvados$user_agreements_signatures()}}\r
+\item \href{#method-Arvados-user_agreements_sign}{\code{Arvados$user_agreements_sign()}}\r
+\item \href{#method-Arvados-user_agreements_list}{\code{Arvados$user_agreements_list()}}\r
+\item \href{#method-Arvados-user_agreements_new}{\code{Arvados$user_agreements_new()}}\r
+\item \href{#method-Arvados-configs_get}{\code{Arvados$configs_get()}}\r
+\item \href{#method-Arvados-getHostName}{\code{Arvados$getHostName()}}\r
+\item \href{#method-Arvados-getToken}{\code{Arvados$getToken()}}\r
+\item \href{#method-Arvados-setRESTService}{\code{Arvados$setRESTService()}}\r
+\item \href{#method-Arvados-getRESTService}{\code{Arvados$getRESTService()}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-Arvados-new"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-new}{}}}\r
 \subsection{Method \code{new()}}{\r
 Initialize new enviroment.\r
 \subsection{Usage}{\r
@@ -302,8 +358,8 @@ A new `Arvados` object.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-project_exist"></a>}}\r
-\if{latex}{\out{\hypertarget{method-project_exist}{}}}\r
+\if{html}{\out{<a id="method-Arvados-project_exist"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-project_exist}{}}}\r
 \subsection{Method \code{project_exist()}}{\r
 project_exist enables checking if the project with such a UUID exist.\r
 \subsection{Usage}{\r
@@ -319,7 +375,9 @@ project_exist enables checking if the project with such a UUID exist.
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{arv$project_exist(uuid = projectUUID)\r
+\preformatted{\dontrun{\r
+arv$project_exist(uuid = "projectUUID")\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
 \r
@@ -327,8 +385,8 @@ project_exist enables checking if the project with such a UUID exist.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-project_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-project_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-project_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-project_get}{}}}\r
 \subsection{Method \code{project_get()}}{\r
 project_get returns the demanded project.\r
 \subsection{Usage}{\r
@@ -344,7 +402,9 @@ project_get returns the demanded project.
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{project <- arv$project_get(uuid = projectUUID)\r
+\preformatted{\dontrun{\r
+project <- arv$project_get(uuid = 'projectUUID')\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
 \r
@@ -352,8 +412,8 @@ project_get returns the demanded project.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-project_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-project_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-project_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-project_create}{}}}\r
 \subsection{Method \code{project_create()}}{\r
 project_create creates a new project of a given name and description.\r
 \subsection{Usage}{\r
@@ -383,17 +443,19 @@ project_create creates a new project of a given name and description.
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{Properties <- list() # should contain a list of new properties to be added\r
+\preformatted{\dontrun{\r
+Properties <- list() # should contain a list of new properties to be added\r
 new_project <- arv$project_create(name = "project name", description = "project description", owner_uuid = "project UUID", properties = NULL, ensureUniqueName = "false")\r
 }\r
+}\r
 \if{html}{\out{</div>}}\r
 \r
 }\r
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-project_properties_set"></a>}}\r
-\if{latex}{\out{\hypertarget{method-project_properties_set}{}}}\r
+\if{html}{\out{<a id="method-Arvados-project_properties_set"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-project_properties_set}{}}}\r
 \subsection{Method \code{project_properties_set()}}{\r
 project_properties_set is a method defined in Arvados class that enables setting properties. Allows to set or overwrite the properties. In case there are set already it overwrites them.\r
 \subsection{Usage}{\r
@@ -411,17 +473,19 @@ project_properties_set is a method defined in Arvados class that enables setting
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{Properties <- list() # should contain a list of new properties to be added\r
+\preformatted{\dontrun{\r
+Properties <- list() # should contain a list of new properties to be added\r
 arv$project_properties_set(Properties, uuid)\r
 }\r
+}\r
 \if{html}{\out{</div>}}\r
 \r
 }\r
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-project_properties_append"></a>}}\r
-\if{latex}{\out{\hypertarget{method-project_properties_append}{}}}\r
+\if{html}{\out{<a id="method-Arvados-project_properties_append"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-project_properties_append}{}}}\r
 \subsection{Method \code{project_properties_append()}}{\r
 project_properties_append is a method defined in Arvados class that enables appending properties. Allows to add new properties.\r
 \subsection{Usage}{\r
@@ -431,25 +495,27 @@ project_properties_append is a method defined in Arvados class that enables appe
 \subsection{Arguments}{\r
 \if{html}{\out{<div class="arguments">}}\r
 \describe{\r
-\item{\code{uuid}}{The UUID of a project or a file.}\r
+\item{\code{properties}}{List of new properties.}\r
 \r
-\item{\code{listOfNewProperties}}{List of new properties.}\r
+\item{\code{uuid}}{The UUID of a project or a file.}\r
 }\r
 \if{html}{\out{</div>}}\r
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{newProperties <- list() # should contain a list of new properties to be added\r
+\preformatted{\dontrun{\r
+newProperties <- list() # should contain a list of new properties to be added\r
 arv$project_properties_append(properties = newProperties, uuid)\r
 }\r
+}\r
 \if{html}{\out{</div>}}\r
 \r
 }\r
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-project_properties_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-project_properties_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-project_properties_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-project_properties_get}{}}}\r
 \subsection{Method \code{project_properties_get()}}{\r
 project_properties_get is a method defined in Arvados class that returns properties.\r
 \subsection{Usage}{\r
@@ -465,7 +531,9 @@ project_properties_get is a method defined in Arvados class that returns propert
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{arv$project_properties_get(projectUUID)\r
+\preformatted{\dontrun{\r
+arv$project_properties_get(projectUUID)\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
 \r
@@ -473,8 +541,8 @@ project_properties_get is a method defined in Arvados class that returns propert
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-project_properties_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-project_properties_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-project_properties_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-project_properties_delete}{}}}\r
 \subsection{Method \code{project_properties_delete()}}{\r
 project_properties_delete is a method defined in Arvados class that deletes list of properties.\r
 \subsection{Usage}{\r
@@ -492,17 +560,19 @@ project_properties_delete is a method defined in Arvados class that deletes list
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{Properties <- list() # should contain a list of new properties to be added\r
+\preformatted{\dontrun{\r
+Properties <- list() # should contain a list of new properties to be added\r
 arv$project_properties_delete(Properties,  projectUUID)\r
 }\r
+}\r
 \if{html}{\out{</div>}}\r
 \r
 }\r
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-project_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-project_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-project_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-project_update}{}}}\r
 \subsection{Method \code{project_update()}}{\r
 project_update enables updating project. New name, description and properties may be given.\r
 \subsection{Usage}{\r
@@ -520,17 +590,19 @@ project_update enables updating project. New name, description and properties ma
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{newProperties <- list() # should contain a list of new properties to be added\r
+\preformatted{\dontrun{\r
+newProperties <- list() # should contain a list of new properties to be added\r
 arv$project_update(name = "new project name", properties = newProperties, uuid = projectUUID)\r
 }\r
+}\r
 \if{html}{\out{</div>}}\r
 \r
 }\r
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-project_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-project_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-project_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-project_list}{}}}\r
 \subsection{Method \code{project_list()}}{\r
 project_list enables listing project by its name, uuid, properties, permissions.\r
 \subsection{Usage}{\r
@@ -560,7 +632,9 @@ project_list enables listing project by its name, uuid, properties, permissions.
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{listOfprojects <- arv$project_list(list(list("owner_uuid", "=", projectUUID))) # Sample query which show projects within the project of a given UUID\r
+\preformatted{\dontrun{\r
+listOfprojects <- arv$project_list(list(list("owner_uuid", "=", projectUUID))) # Sample query which show projects within the project of a given UUID\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
 \r
@@ -568,8 +642,8 @@ project_list enables listing project by its name, uuid, properties, permissions.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-project_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-project_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-project_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-project_delete}{}}}\r
 \subsection{Method \code{project_delete()}}{\r
 project_delete trashes project of a given uuid. It can be restored from trash or deleted permanently.\r
 \subsection{Usage}{\r
@@ -583,10 +657,20 @@ project_delete trashes project of a given uuid. It can be restored from trash or
 }\r
 \if{html}{\out{</div>}}\r
 }\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{\dontrun{\r
+arv$project_delete(uuid = 'projectUUID')\r
+}\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-api_clients_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-api_clients_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-api_clients_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-api_clients_get}{}}}\r
 \subsection{Method \code{api_clients_get()}}{\r
 api_clients_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -602,8 +686,8 @@ api_clients_get is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-api_clients_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-api_clients_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-api_clients_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-api_clients_create}{}}}\r
 \subsection{Method \code{api_clients_create()}}{\r
 api_clients_create is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -627,8 +711,8 @@ api_clients_create is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-api_clients_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-api_clients_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-api_clients_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-api_clients_update}{}}}\r
 \subsection{Method \code{api_clients_update()}}{\r
 api_clients_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -646,8 +730,8 @@ api_clients_update is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-api_clients_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-api_clients_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-api_clients_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-api_clients_delete}{}}}\r
 \subsection{Method \code{api_clients_delete()}}{\r
 api_clients_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -663,8 +747,8 @@ api_clients_delete is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-api_clients_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-api_clients_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-api_clients_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-api_clients_list}{}}}\r
 \subsection{Method \code{api_clients_list()}}{\r
 api_clients_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -693,8 +777,8 @@ api_clients_list is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-api_client_authorizations_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-api_client_authorizations_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-api_client_authorizations_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-api_client_authorizations_get}{}}}\r
 \subsection{Method \code{api_client_authorizations_get()}}{\r
 api_client_authorizations_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -710,8 +794,8 @@ api_client_authorizations_get is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-api_client_authorizations_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-api_client_authorizations_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-api_client_authorizations_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-api_client_authorizations_create}{}}}\r
 \subsection{Method \code{api_client_authorizations_create()}}{\r
 api_client_authorizations_create is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -735,8 +819,8 @@ api_client_authorizations_create is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-api_client_authorizations_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-api_client_authorizations_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-api_client_authorizations_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-api_client_authorizations_update}{}}}\r
 \subsection{Method \code{api_client_authorizations_update()}}{\r
 api_client_authorizations_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -754,8 +838,8 @@ api_client_authorizations_update is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-api_client_authorizations_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-api_client_authorizations_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-api_client_authorizations_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-api_client_authorizations_delete}{}}}\r
 \subsection{Method \code{api_client_authorizations_delete()}}{\r
 api_client_authorizations_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -771,8 +855,8 @@ api_client_authorizations_delete is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-api_client_authorizations_create_system_auth"></a>}}\r
-\if{latex}{\out{\hypertarget{method-api_client_authorizations_create_system_auth}{}}}\r
+\if{html}{\out{<a id="method-Arvados-api_client_authorizations_create_system_auth"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-api_client_authorizations_create_system_auth}{}}}\r
 \subsection{Method \code{api_client_authorizations_create_system_auth()}}{\r
 api_client_authorizations_create_system_auth is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -784,8 +868,8 @@ api_client_authorizations_create_system_auth is a method defined in Arvados clas
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-api_client_authorizations_current"></a>}}\r
-\if{latex}{\out{\hypertarget{method-api_client_authorizations_current}{}}}\r
+\if{html}{\out{<a id="method-Arvados-api_client_authorizations_current"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-api_client_authorizations_current}{}}}\r
 \subsection{Method \code{api_client_authorizations_current()}}{\r
 api_client_authorizations_current is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -794,8 +878,8 @@ api_client_authorizations_current is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-api_client_authorizations_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-api_client_authorizations_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-api_client_authorizations_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-api_client_authorizations_list}{}}}\r
 \subsection{Method \code{api_client_authorizations_list()}}{\r
 api_client_authorizations_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -824,8 +908,8 @@ api_client_authorizations_list is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-authorized_keys_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-authorized_keys_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-authorized_keys_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-authorized_keys_get}{}}}\r
 \subsection{Method \code{authorized_keys_get()}}{\r
 authorized_keys_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -841,8 +925,8 @@ authorized_keys_get is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-authorized_keys_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-authorized_keys_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-authorized_keys_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-authorized_keys_create}{}}}\r
 \subsection{Method \code{authorized_keys_create()}}{\r
 authorized_keys_create is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -866,8 +950,8 @@ authorized_keys_create is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-authorized_keys_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-authorized_keys_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-authorized_keys_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-authorized_keys_update}{}}}\r
 \subsection{Method \code{authorized_keys_update()}}{\r
 authorized_keys_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -885,8 +969,8 @@ authorized_keys_update is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-authorized_keys_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-authorized_keys_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-authorized_keys_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-authorized_keys_delete}{}}}\r
 \subsection{Method \code{authorized_keys_delete()}}{\r
 authorized_keys_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -902,8 +986,8 @@ authorized_keys_delete is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-authorized_keys_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-authorized_keys_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-authorized_keys_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-authorized_keys_list}{}}}\r
 \subsection{Method \code{authorized_keys_list()}}{\r
 authorized_keys_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -932,8 +1016,8 @@ authorized_keys_list is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-collections_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-collections_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-collections_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-collections_get}{}}}\r
 \subsection{Method \code{collections_get()}}{\r
 collections_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -943,15 +1027,24 @@ collections_get is a method defined in Arvados class.
 \subsection{Arguments}{\r
 \if{html}{\out{<div class="arguments">}}\r
 \describe{\r
-\item{\code{uuid}}{The UUID of the Collection in question.\r
-collection <- arv$collections_get(uuid = collectionUUID)}\r
+\item{\code{uuid}}{The UUID of the Collection in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{\dontrun{\r
+collection <- arv$collections_get(uuid = collectionUUID)\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
+\r
 }\r
+\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-collections_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-collections_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-collections_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-collections_create}{}}}\r
 \subsection{Method \code{collections_create()}}{\r
 collections_create is a method defined in Arvados class that enables collections creation.\r
 \subsection{Usage}{\r
@@ -984,17 +1077,19 @@ collections_create is a method defined in Arvados class that enables collections
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{Properties <- list() # should contain a list of new properties to be added\r
+\preformatted{\dontrun{\r
+Properties <- list() # should contain a list of new properties to be added\r
 arv$collections_create(name = "collectionTitle", description = "collectionDescription", ownerUUID = "collectionOwner", properties = Properties)\r
 }\r
+}\r
 \if{html}{\out{</div>}}\r
 \r
 }\r
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-collections_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-collections_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-collections_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-collections_update}{}}}\r
 \subsection{Method \code{collections_update()}}{\r
 collections_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1024,7 +1119,9 @@ collections_update is a method defined in Arvados class.
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{collection <- arv$collections_create(name = "newCollectionTitle", description = "newCollectionDescription", ownerUUID = "collectionOwner", properties = NULL)\r
+\preformatted{\dontrun{\r
+collection <- arv$collections_update(name = "newCollectionTitle", description = "newCollectionDescription", ownerUUID = "collectionOwner", properties = NULL, uuid = "collectionUUID")\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
 \r
@@ -1032,8 +1129,8 @@ collections_update is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-collections_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-collections_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-collections_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-collections_delete}{}}}\r
 \subsection{Method \code{collections_delete()}}{\r
 collections_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1049,7 +1146,9 @@ collections_delete is a method defined in Arvados class.
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{arv$collection_delete(collectionUUID)\r
+\preformatted{\dontrun{\r
+arv$collection_delete(collectionUUID)\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
 \r
@@ -1057,8 +1156,8 @@ collections_delete is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-collections_provenance"></a>}}\r
-\if{latex}{\out{\hypertarget{method-collections_provenance}{}}}\r
+\if{html}{\out{<a id="method-Arvados-collections_provenance"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-collections_provenance}{}}}\r
 \subsection{Method \code{collections_provenance()}}{\r
 collections_provenance is a method defined in Arvados class, it returns the collection by uuid.\r
 \subsection{Usage}{\r
@@ -1074,7 +1173,9 @@ collections_provenance is a method defined in Arvados class, it returns the coll
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{collection <- arv$collections_provenance(collectionUUID)\r
+\preformatted{\dontrun{\r
+collection <- arv$collections_provenance(collectionUUID)\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
 \r
@@ -1082,8 +1183,8 @@ collections_provenance is a method defined in Arvados class, it returns the coll
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-collections_used_by"></a>}}\r
-\if{latex}{\out{\hypertarget{method-collections_used_by}{}}}\r
+\if{html}{\out{<a id="method-Arvados-collections_used_by"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-collections_used_by}{}}}\r
 \subsection{Method \code{collections_used_by()}}{\r
 collections_used_by is a method defined in Arvados class, it returns collection by portable_data_hash.\r
 \subsection{Usage}{\r
@@ -1099,8 +1200,8 @@ collections_used_by is a method defined in Arvados class, it returns collection
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-collections_trash"></a>}}\r
-\if{latex}{\out{\hypertarget{method-collections_trash}{}}}\r
+\if{html}{\out{<a id="method-Arvados-collections_trash"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-collections_trash}{}}}\r
 \subsection{Method \code{collections_trash()}}{\r
 collections_trash is a method defined in Arvados class, it moves collection to trash.\r
 \subsection{Usage}{\r
@@ -1116,7 +1217,9 @@ collections_trash is a method defined in Arvados class, it moves collection to t
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{arv$collections_trash(collectionUUID)\r
+\preformatted{\dontrun{\r
+arv$collections_trash(collectionUUID)\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
 \r
@@ -1124,8 +1227,8 @@ collections_trash is a method defined in Arvados class, it moves collection to t
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-collections_untrash"></a>}}\r
-\if{latex}{\out{\hypertarget{method-collections_untrash}{}}}\r
+\if{html}{\out{<a id="method-Arvados-collections_untrash"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-collections_untrash}{}}}\r
 \subsection{Method \code{collections_untrash()}}{\r
 collections_untrash is a method defined in Arvados class, it moves collection from trash to project.\r
 \subsection{Usage}{\r
@@ -1141,7 +1244,9 @@ collections_untrash is a method defined in Arvados class, it moves collection fr
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{arv$collections_untrash(collectionUUID)\r
+\preformatted{\dontrun{\r
+arv$collections_untrash(collectionUUID)\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
 \r
@@ -1149,8 +1254,8 @@ collections_untrash is a method defined in Arvados class, it moves collection fr
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-collections_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-collections_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-collections_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-collections_list}{}}}\r
 \subsection{Method \code{collections_list()}}{\r
 collections_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1185,7 +1290,9 @@ collections_list is a method defined in Arvados class.
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{collectionList <- arv$collections.list(list(list("name", "=", "Example")))\r
+\preformatted{\dontrun{\r
+collectionList <- arv$collections_list(list(list("name", "=", "Example")))\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
 \r
@@ -1193,8 +1300,8 @@ collections_list is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-containers_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-containers_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-containers_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-containers_get}{}}}\r
 \subsection{Method \code{containers_get()}}{\r
 containers_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1210,8 +1317,8 @@ containers_get is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-containers_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-containers_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-containers_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-containers_create}{}}}\r
 \subsection{Method \code{containers_create()}}{\r
 containers_create is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1235,8 +1342,8 @@ containers_create is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-containers_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-containers_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-containers_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-containers_update}{}}}\r
 \subsection{Method \code{containers_update()}}{\r
 containers_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1254,8 +1361,8 @@ containers_update is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-containers_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-containers_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-containers_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-containers_delete}{}}}\r
 \subsection{Method \code{containers_delete()}}{\r
 containers_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1271,8 +1378,8 @@ containers_delete is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-containers_auth"></a>}}\r
-\if{latex}{\out{\hypertarget{method-containers_auth}{}}}\r
+\if{html}{\out{<a id="method-Arvados-containers_auth"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-containers_auth}{}}}\r
 \subsection{Method \code{containers_auth()}}{\r
 containers_auth is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1288,8 +1395,8 @@ containers_auth is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-containers_lock"></a>}}\r
-\if{latex}{\out{\hypertarget{method-containers_lock}{}}}\r
+\if{html}{\out{<a id="method-Arvados-containers_lock"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-containers_lock}{}}}\r
 \subsection{Method \code{containers_lock()}}{\r
 containers_lock is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1305,8 +1412,8 @@ containers_lock is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-containers_unlock"></a>}}\r
-\if{latex}{\out{\hypertarget{method-containers_unlock}{}}}\r
+\if{html}{\out{<a id="method-Arvados-containers_unlock"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-containers_unlock}{}}}\r
 \subsection{Method \code{containers_unlock()}}{\r
 containers_unlock is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1322,8 +1429,8 @@ containers_unlock is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-containers_secret_mounts"></a>}}\r
-\if{latex}{\out{\hypertarget{method-containers_secret_mounts}{}}}\r
+\if{html}{\out{<a id="method-Arvados-containers_secret_mounts"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-containers_secret_mounts}{}}}\r
 \subsection{Method \code{containers_secret_mounts()}}{\r
 containers_secret_mounts is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1339,8 +1446,8 @@ containers_secret_mounts is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-containers_current"></a>}}\r
-\if{latex}{\out{\hypertarget{method-containers_current}{}}}\r
+\if{html}{\out{<a id="method-Arvados-containers_current"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-containers_current}{}}}\r
 \subsection{Method \code{containers_current()}}{\r
 containers_current is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1349,8 +1456,8 @@ containers_current is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-containers_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-containers_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-containers_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-containers_list}{}}}\r
 \subsection{Method \code{containers_list()}}{\r
 containers_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1379,8 +1486,8 @@ containers_list is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-container_requests_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-container_requests_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-container_requests_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-container_requests_get}{}}}\r
 \subsection{Method \code{container_requests_get()}}{\r
 container_requests_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1396,8 +1503,8 @@ container_requests_get is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-container_requests_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-container_requests_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-container_requests_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-container_requests_create}{}}}\r
 \subsection{Method \code{container_requests_create()}}{\r
 container_requests_create is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1421,8 +1528,8 @@ container_requests_create is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-container_requests_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-container_requests_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-container_requests_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-container_requests_update}{}}}\r
 \subsection{Method \code{container_requests_update()}}{\r
 container_requests_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1440,8 +1547,8 @@ container_requests_update is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-container_requests_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-container_requests_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-container_requests_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-container_requests_delete}{}}}\r
 \subsection{Method \code{container_requests_delete()}}{\r
 container_requests_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1457,8 +1564,8 @@ container_requests_delete is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-container_requests_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-container_requests_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-container_requests_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-container_requests_list}{}}}\r
 \subsection{Method \code{container_requests_list()}}{\r
 container_requests_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1490,8 +1597,8 @@ container_requests_list is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-groups_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-groups_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-groups_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-groups_get}{}}}\r
 \subsection{Method \code{groups_get()}}{\r
 groups_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1507,8 +1614,8 @@ groups_get is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-groups_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-groups_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-groups_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-groups_create}{}}}\r
 \subsection{Method \code{groups_create()}}{\r
 groups_create is a method defined in Arvados class that supports project creation.\r
 \subsection{Usage}{\r
@@ -1535,8 +1642,8 @@ groups_create is a method defined in Arvados class that supports project creatio
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-groups_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-groups_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-groups_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-groups_update}{}}}\r
 \subsection{Method \code{groups_update()}}{\r
 groups_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1556,8 +1663,8 @@ groups_update is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-groups_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-groups_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-groups_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-groups_delete}{}}}\r
 \subsection{Method \code{groups_delete()}}{\r
 groups_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1573,8 +1680,8 @@ groups_delete is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-groups_contents"></a>}}\r
-\if{latex}{\out{\hypertarget{method-groups_contents}{}}}\r
+\if{html}{\out{<a id="method-Arvados-groups_contents"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-groups_contents}{}}}\r
 \subsection{Method \code{groups_contents()}}{\r
 groups_contents is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1612,8 +1719,8 @@ groups_contents is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-groups_shared"></a>}}\r
-\if{latex}{\out{\hypertarget{method-groups_shared}{}}}\r
+\if{html}{\out{<a id="method-Arvados-groups_shared"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-groups_shared}{}}}\r
 \subsection{Method \code{groups_shared()}}{\r
 groups_shared is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1646,8 +1753,8 @@ groups_shared is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-groups_trash"></a>}}\r
-\if{latex}{\out{\hypertarget{method-groups_trash}{}}}\r
+\if{html}{\out{<a id="method-Arvados-groups_trash"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-groups_trash}{}}}\r
 \subsection{Method \code{groups_trash()}}{\r
 groups_trash is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1663,8 +1770,8 @@ groups_trash is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-groups_untrash"></a>}}\r
-\if{latex}{\out{\hypertarget{method-groups_untrash}{}}}\r
+\if{html}{\out{<a id="method-Arvados-groups_untrash"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-groups_untrash}{}}}\r
 \subsection{Method \code{groups_untrash()}}{\r
 groups_untrash is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1680,8 +1787,8 @@ groups_untrash is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-groups_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-groups_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-groups_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-groups_list}{}}}\r
 \subsection{Method \code{groups_list()}}{\r
 groups_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1713,8 +1820,8 @@ groups_list is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-keep_services_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-keep_services_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-keep_services_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-keep_services_get}{}}}\r
 \subsection{Method \code{keep_services_get()}}{\r
 keep_services_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1730,8 +1837,8 @@ keep_services_get is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-keep_services_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-keep_services_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-keep_services_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-keep_services_create}{}}}\r
 \subsection{Method \code{keep_services_create()}}{\r
 keep_services_create is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1755,8 +1862,8 @@ keep_services_create is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-keep_services_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-keep_services_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-keep_services_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-keep_services_update}{}}}\r
 \subsection{Method \code{keep_services_update()}}{\r
 keep_services_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1774,8 +1881,8 @@ keep_services_update is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-keep_services_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-keep_services_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-keep_services_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-keep_services_delete}{}}}\r
 \subsection{Method \code{keep_services_delete()}}{\r
 keep_services_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1791,8 +1898,8 @@ keep_services_delete is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-keep_services_accessible"></a>}}\r
-\if{latex}{\out{\hypertarget{method-keep_services_accessible}{}}}\r
+\if{html}{\out{<a id="method-Arvados-keep_services_accessible"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-keep_services_accessible}{}}}\r
 \subsection{Method \code{keep_services_accessible()}}{\r
 keep_services_accessible is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1801,8 +1908,8 @@ keep_services_accessible is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-keep_services_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-keep_services_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-keep_services_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-keep_services_list}{}}}\r
 \subsection{Method \code{keep_services_list()}}{\r
 keep_services_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1831,8 +1938,8 @@ keep_services_list is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-project_permission_give"></a>}}\r
-\if{latex}{\out{\hypertarget{method-project_permission_give}{}}}\r
+\if{html}{\out{<a id="method-Arvados-project_permission_give"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-project_permission_give}{}}}\r
 \subsection{Method \code{project_permission_give()}}{\r
 project_permission_give is a method defined in Arvados class that enables sharing files with another users.\r
 \subsection{Usage}{\r
@@ -1852,7 +1959,9 @@ project_permission_give is a method defined in Arvados class that enables sharin
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{arv$project_permission_give(type = "can_read", uuid = objectUUID, user = userUUID)\r
+\preformatted{\dontrun{\r
+arv$project_permission_give(type = "can_read", uuid = objectUUID, user = userUUID)\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
 \r
@@ -1860,8 +1969,8 @@ project_permission_give is a method defined in Arvados class that enables sharin
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-project_permission_refuse"></a>}}\r
-\if{latex}{\out{\hypertarget{method-project_permission_refuse}{}}}\r
+\if{html}{\out{<a id="method-Arvados-project_permission_refuse"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-project_permission_refuse}{}}}\r
 \subsection{Method \code{project_permission_refuse()}}{\r
 project_permission_refuse is a method defined in Arvados class that unables sharing files with another users.\r
 \subsection{Usage}{\r
@@ -1881,7 +1990,9 @@ project_permission_refuse is a method defined in Arvados class that unables shar
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{arv$project_permission_refuse(type = "can_read", uuid = objectUUID, user = userUUID)\r
+\preformatted{\dontrun{\r
+arv$project_permission_refuse(type = "can_read", uuid = objectUUID, user = userUUID)\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
 \r
@@ -1889,8 +2000,8 @@ project_permission_refuse is a method defined in Arvados class that unables shar
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-project_permission_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-project_permission_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-project_permission_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-project_permission_update}{}}}\r
 \subsection{Method \code{project_permission_update()}}{\r
 project_permission_update is a method defined in Arvados class that enables updating permissions.\r
 \subsection{Usage}{\r
@@ -1912,7 +2023,9 @@ project_permission_update is a method defined in Arvados class that enables upda
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{arv$project_permission_update(typeOld = "can_read", typeNew = "can_write", uuid = objectUUID, user = userUUID)\r
+\preformatted{\dontrun{\r
+arv$project_permission_update(typeOld = "can_read", typeNew = "can_write", uuid = objectUUID, user = userUUID)\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
 \r
@@ -1920,8 +2033,8 @@ project_permission_update is a method defined in Arvados class that enables upda
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-project_permission_check"></a>}}\r
-\if{latex}{\out{\hypertarget{method-project_permission_check}{}}}\r
+\if{html}{\out{<a id="method-Arvados-project_permission_check"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-project_permission_check}{}}}\r
 \subsection{Method \code{project_permission_check()}}{\r
 project_permission_check is a method defined in Arvados class that enables checking file permissions.\r
 \subsection{Usage}{\r
@@ -1941,7 +2054,9 @@ project_permission_check is a method defined in Arvados class that enables check
 }\r
 \subsection{Examples}{\r
 \if{html}{\out{<div class="r example copy">}}\r
-\preformatted{arv$project_permission_check(type = "can_read", uuid = objectUUID, user = userUUID)\r
+\preformatted{\dontrun{\r
+arv$project_permission_check(type = "can_read", uuid = objectUUID, user = userUUID)\r
+}\r
 }\r
 \if{html}{\out{</div>}}\r
 \r
@@ -1949,8 +2064,8 @@ project_permission_check is a method defined in Arvados class that enables check
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-links_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-links_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-links_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-links_get}{}}}\r
 \subsection{Method \code{links_get()}}{\r
 links_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1966,8 +2081,8 @@ links_get is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-links_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-links_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-links_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-links_create}{}}}\r
 \subsection{Method \code{links_create()}}{\r
 links_create is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -1987,8 +2102,8 @@ links_create is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-links_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-links_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-links_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-links_update}{}}}\r
 \subsection{Method \code{links_update()}}{\r
 links_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2006,8 +2121,8 @@ links_update is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-links_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-links_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-links_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-links_delete}{}}}\r
 \subsection{Method \code{links_delete()}}{\r
 links_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2023,8 +2138,8 @@ links_delete is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-links_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-links_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-links_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-links_list}{}}}\r
 \subsection{Method \code{links_list()}}{\r
 links_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2053,8 +2168,8 @@ links_list is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-links_get_permissions"></a>}}\r
-\if{latex}{\out{\hypertarget{method-links_get_permissions}{}}}\r
+\if{html}{\out{<a id="method-Arvados-links_get_permissions"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-links_get_permissions}{}}}\r
 \subsection{Method \code{links_get_permissions()}}{\r
 links_get_permissions is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2070,8 +2185,8 @@ links_get_permissions is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-logs_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-logs_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-logs_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-logs_get}{}}}\r
 \subsection{Method \code{logs_get()}}{\r
 logs_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2087,8 +2202,8 @@ logs_get is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-logs_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-logs_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-logs_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-logs_create}{}}}\r
 \subsection{Method \code{logs_create()}}{\r
 logs_create is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2108,8 +2223,8 @@ logs_create is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-logs_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-logs_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-logs_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-logs_update}{}}}\r
 \subsection{Method \code{logs_update()}}{\r
 logs_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2127,8 +2242,8 @@ logs_update is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-logs_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-logs_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-logs_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-logs_delete}{}}}\r
 \subsection{Method \code{logs_delete()}}{\r
 logs_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2144,8 +2259,8 @@ logs_delete is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-logs_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-logs_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-logs_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-logs_list}{}}}\r
 \subsection{Method \code{logs_list()}}{\r
 logs_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2174,8 +2289,8 @@ logs_list is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-users_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-users_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-users_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-users_get}{}}}\r
 \subsection{Method \code{users_get()}}{\r
 users_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2191,8 +2306,8 @@ users_get is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-users_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-users_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-users_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-users_create}{}}}\r
 \subsection{Method \code{users_create()}}{\r
 users_create is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2212,8 +2327,8 @@ users_create is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-users_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-users_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-users_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-users_update}{}}}\r
 \subsection{Method \code{users_update()}}{\r
 users_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2231,8 +2346,8 @@ users_update is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-users_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-users_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-users_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-users_delete}{}}}\r
 \subsection{Method \code{users_delete()}}{\r
 users_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2248,8 +2363,8 @@ users_delete is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-users_current"></a>}}\r
-\if{latex}{\out{\hypertarget{method-users_current}{}}}\r
+\if{html}{\out{<a id="method-Arvados-users_current"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-users_current}{}}}\r
 \subsection{Method \code{users_current()}}{\r
 users_current is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2258,8 +2373,8 @@ users_current is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-users_system"></a>}}\r
-\if{latex}{\out{\hypertarget{method-users_system}{}}}\r
+\if{html}{\out{<a id="method-Arvados-users_system"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-users_system}{}}}\r
 \subsection{Method \code{users_system()}}{\r
 users_system is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2268,8 +2383,8 @@ users_system is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-users_activate"></a>}}\r
-\if{latex}{\out{\hypertarget{method-users_activate}{}}}\r
+\if{html}{\out{<a id="method-Arvados-users_activate"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-users_activate}{}}}\r
 \subsection{Method \code{users_activate()}}{\r
 users_activate is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2285,8 +2400,8 @@ users_activate is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-users_setup"></a>}}\r
-\if{latex}{\out{\hypertarget{method-users_setup}{}}}\r
+\if{html}{\out{<a id="method-Arvados-users_setup"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-users_setup}{}}}\r
 \subsection{Method \code{users_setup()}}{\r
 users_setup is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2301,8 +2416,8 @@ users_setup is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-users_unsetup"></a>}}\r
-\if{latex}{\out{\hypertarget{method-users_unsetup}{}}}\r
+\if{html}{\out{<a id="method-Arvados-users_unsetup"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-users_unsetup}{}}}\r
 \subsection{Method \code{users_unsetup()}}{\r
 users_unsetup is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2318,8 +2433,8 @@ users_unsetup is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-users_merge"></a>}}\r
-\if{latex}{\out{\hypertarget{method-users_merge}{}}}\r
+\if{html}{\out{<a id="method-Arvados-users_merge"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-users_merge}{}}}\r
 \subsection{Method \code{users_merge()}}{\r
 users_merge is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2334,8 +2449,8 @@ users_merge is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-users_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-users_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-users_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-users_list}{}}}\r
 \subsection{Method \code{users_list()}}{\r
 users_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2364,8 +2479,8 @@ users_list is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-repositories_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-repositories_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-repositories_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-repositories_get}{}}}\r
 \subsection{Method \code{repositories_get()}}{\r
 repositories_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2381,8 +2496,8 @@ repositories_get is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-repositories_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-repositories_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-repositories_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-repositories_create}{}}}\r
 \subsection{Method \code{repositories_create()}}{\r
 repositories_create is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2406,8 +2521,8 @@ repositories_create is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-repositories_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-repositories_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-repositories_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-repositories_update}{}}}\r
 \subsection{Method \code{repositories_update()}}{\r
 repositories_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2425,8 +2540,8 @@ repositories_update is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-repositories_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-repositories_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-repositories_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-repositories_delete}{}}}\r
 \subsection{Method \code{repositories_delete()}}{\r
 repositories_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2442,8 +2557,8 @@ repositories_delete is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-repositories_get_all_permissions"></a>}}\r
-\if{latex}{\out{\hypertarget{method-repositories_get_all_permissions}{}}}\r
+\if{html}{\out{<a id="method-Arvados-repositories_get_all_permissions"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-repositories_get_all_permissions}{}}}\r
 \subsection{Method \code{repositories_get_all_permissions()}}{\r
 repositories_get_all_permissions is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2452,8 +2567,8 @@ repositories_get_all_permissions is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-repositories_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-repositories_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-repositories_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-repositories_list}{}}}\r
 \subsection{Method \code{repositories_list()}}{\r
 repositories_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2482,8 +2597,8 @@ repositories_list is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-virtual_machines_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-virtual_machines_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-virtual_machines_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-virtual_machines_get}{}}}\r
 \subsection{Method \code{virtual_machines_get()}}{\r
 virtual_machines_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2499,8 +2614,8 @@ virtual_machines_get is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-virtual_machines_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-virtual_machines_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-virtual_machines_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-virtual_machines_create}{}}}\r
 \subsection{Method \code{virtual_machines_create()}}{\r
 virtual_machines_create is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2524,8 +2639,8 @@ virtual_machines_create is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-virtual_machines_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-virtual_machines_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-virtual_machines_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-virtual_machines_update}{}}}\r
 \subsection{Method \code{virtual_machines_update()}}{\r
 virtual_machines_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2543,8 +2658,8 @@ virtual_machines_update is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-virtual_machines_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-virtual_machines_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-virtual_machines_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-virtual_machines_delete}{}}}\r
 \subsection{Method \code{virtual_machines_delete()}}{\r
 virtual_machines_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2560,8 +2675,8 @@ virtual_machines_delete is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-virtual_machines_logins"></a>}}\r
-\if{latex}{\out{\hypertarget{method-virtual_machines_logins}{}}}\r
+\if{html}{\out{<a id="method-Arvados-virtual_machines_logins"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-virtual_machines_logins}{}}}\r
 \subsection{Method \code{virtual_machines_logins()}}{\r
 virtual_machines_logins is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2577,8 +2692,8 @@ virtual_machines_logins is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-virtual_machines_get_all_logins"></a>}}\r
-\if{latex}{\out{\hypertarget{method-virtual_machines_get_all_logins}{}}}\r
+\if{html}{\out{<a id="method-Arvados-virtual_machines_get_all_logins"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-virtual_machines_get_all_logins}{}}}\r
 \subsection{Method \code{virtual_machines_get_all_logins()}}{\r
 virtual_machines_get_all_logins is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2587,8 +2702,8 @@ virtual_machines_get_all_logins is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-virtual_machines_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-virtual_machines_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-virtual_machines_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-virtual_machines_list}{}}}\r
 \subsection{Method \code{virtual_machines_list()}}{\r
 virtual_machines_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2617,8 +2732,8 @@ virtual_machines_list is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-workflows_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-workflows_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-workflows_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-workflows_get}{}}}\r
 \subsection{Method \code{workflows_get()}}{\r
 workflows_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2634,8 +2749,8 @@ workflows_get is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-workflows_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-workflows_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-workflows_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-workflows_create}{}}}\r
 \subsection{Method \code{workflows_create()}}{\r
 workflows_create is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2659,8 +2774,8 @@ workflows_create is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-workflows_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-workflows_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-workflows_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-workflows_update}{}}}\r
 \subsection{Method \code{workflows_update()}}{\r
 workflows_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2678,8 +2793,8 @@ workflows_update is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-workflows_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-workflows_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-workflows_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-workflows_delete}{}}}\r
 \subsection{Method \code{workflows_delete()}}{\r
 workflows_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2695,8 +2810,8 @@ workflows_delete is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-workflows_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-workflows_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-workflows_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-workflows_list}{}}}\r
 \subsection{Method \code{workflows_list()}}{\r
 workflows_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2725,8 +2840,8 @@ workflows_list is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-user_agreements_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-user_agreements_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-user_agreements_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-user_agreements_get}{}}}\r
 \subsection{Method \code{user_agreements_get()}}{\r
 user_agreements_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2742,8 +2857,8 @@ user_agreements_get is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-user_agreements_create"></a>}}\r
-\if{latex}{\out{\hypertarget{method-user_agreements_create}{}}}\r
+\if{html}{\out{<a id="method-Arvados-user_agreements_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-user_agreements_create}{}}}\r
 \subsection{Method \code{user_agreements_create()}}{\r
 user_agreements_create is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2767,8 +2882,8 @@ user_agreements_create is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-user_agreements_update"></a>}}\r
-\if{latex}{\out{\hypertarget{method-user_agreements_update}{}}}\r
+\if{html}{\out{<a id="method-Arvados-user_agreements_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-user_agreements_update}{}}}\r
 \subsection{Method \code{user_agreements_update()}}{\r
 user_agreements_update is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2786,8 +2901,8 @@ user_agreements_update is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-user_agreements_delete"></a>}}\r
-\if{latex}{\out{\hypertarget{method-user_agreements_delete}{}}}\r
+\if{html}{\out{<a id="method-Arvados-user_agreements_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-user_agreements_delete}{}}}\r
 \subsection{Method \code{user_agreements_delete()}}{\r
 user_agreements_delete is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2803,8 +2918,8 @@ user_agreements_delete is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-user_agreements_signatures"></a>}}\r
-\if{latex}{\out{\hypertarget{method-user_agreements_signatures}{}}}\r
+\if{html}{\out{<a id="method-Arvados-user_agreements_signatures"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-user_agreements_signatures}{}}}\r
 \subsection{Method \code{user_agreements_signatures()}}{\r
 user_agreements_signatures is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2813,8 +2928,8 @@ user_agreements_signatures is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-user_agreements_sign"></a>}}\r
-\if{latex}{\out{\hypertarget{method-user_agreements_sign}{}}}\r
+\if{html}{\out{<a id="method-Arvados-user_agreements_sign"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-user_agreements_sign}{}}}\r
 \subsection{Method \code{user_agreements_sign()}}{\r
 user_agreements_sign is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2823,8 +2938,8 @@ user_agreements_sign is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-user_agreements_list"></a>}}\r
-\if{latex}{\out{\hypertarget{method-user_agreements_list}{}}}\r
+\if{html}{\out{<a id="method-Arvados-user_agreements_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-user_agreements_list}{}}}\r
 \subsection{Method \code{user_agreements_list()}}{\r
 user_agreements_list is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2853,8 +2968,8 @@ user_agreements_list is a method defined in Arvados class.
 }\r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-user_agreements_new"></a>}}\r
-\if{latex}{\out{\hypertarget{method-user_agreements_new}{}}}\r
+\if{html}{\out{<a id="method-Arvados-user_agreements_new"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-user_agreements_new}{}}}\r
 \subsection{Method \code{user_agreements_new()}}{\r
 user_agreements_new is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2863,8 +2978,8 @@ user_agreements_new is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-configs_get"></a>}}\r
-\if{latex}{\out{\hypertarget{method-configs_get}{}}}\r
+\if{html}{\out{<a id="method-Arvados-configs_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-configs_get}{}}}\r
 \subsection{Method \code{configs_get()}}{\r
 configs_get is a method defined in Arvados class.\r
 \subsection{Usage}{\r
@@ -2873,8 +2988,8 @@ configs_get is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-getHostName"></a>}}\r
-\if{latex}{\out{\hypertarget{method-getHostName}{}}}\r
+\if{html}{\out{<a id="method-Arvados-getHostName"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-getHostName}{}}}\r
 \subsection{Method \code{getHostName()}}{\r
 \subsection{Usage}{\r
 \if{html}{\out{<div class="r">}}\preformatted{Arvados$getHostName()}\if{html}{\out{</div>}}\r
@@ -2882,8 +2997,8 @@ configs_get is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-getToken"></a>}}\r
-\if{latex}{\out{\hypertarget{method-getToken}{}}}\r
+\if{html}{\out{<a id="method-Arvados-getToken"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-getToken}{}}}\r
 \subsection{Method \code{getToken()}}{\r
 \subsection{Usage}{\r
 \if{html}{\out{<div class="r">}}\preformatted{Arvados$getToken()}\if{html}{\out{</div>}}\r
@@ -2891,8 +3006,8 @@ configs_get is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-setRESTService"></a>}}\r
-\if{latex}{\out{\hypertarget{method-setRESTService}{}}}\r
+\if{html}{\out{<a id="method-Arvados-setRESTService"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-setRESTService}{}}}\r
 \subsection{Method \code{setRESTService()}}{\r
 \subsection{Usage}{\r
 \if{html}{\out{<div class="r">}}\preformatted{Arvados$setRESTService(newREST)}\if{html}{\out{</div>}}\r
@@ -2900,8 +3015,8 @@ configs_get is a method defined in Arvados class.
 \r
 }\r
 \if{html}{\out{<hr>}}\r
-\if{html}{\out{<a id="method-getRESTService"></a>}}\r
-\if{latex}{\out{\hypertarget{method-getRESTService}{}}}\r
+\if{html}{\out{<a id="method-Arvados-getRESTService"></a>}}\r
+\if{latex}{\out{\hypertarget{method-Arvados-getRESTService}{}}}\r
 \subsection{Method \code{getRESTService()}}{\r
 \subsection{Usage}{\r
 \if{html}{\out{<div class="r">}}\preformatted{Arvados$getRESTService()}\if{html}{\out{</div>}}\r