# $ rake generate baseurl=/example arvados_api_host=example.com
baseurl:
+current_version:
+all_versions:
arvados_api_host: localhost
+arvados_cluster_uuid: local
arvados_workbench_host: http://localhost
exclude: ["Rakefile", "tmp", "vendor"]
- Working with data sets:
- user/tutorials/tutorial-keep.html.textile.liquid
- user/tutorials/tutorial-keep-get.html.textile.liquid
- - user/tutorials/tutorial-keep-collection-lifecycle.html.textile.liquid
- user/tutorials/tutorial-keep-mount-gnu-linux.html.textile.liquid
- user/tutorials/tutorial-keep-mount-os-x.html.textile.liquid
- user/tutorials/tutorial-keep-mount-windows.html.textile.liquid
- user/topics/keep.html.textile.liquid
+ - user/tutorials/tutorial-keep-collection-lifecycle.html.textile.liquid
- user/topics/arv-copy.html.textile.liquid
- user/topics/storage-classes.html.textile.liquid
- user/topics/collection-versioning.html.textile.liquid
- - Running workflows at the command line:
- - user/cwl/cwl-runner.html.textile.liquid
- - user/cwl/cwl-run-options.html.textile.liquid
- Working with git repositories:
- user/tutorials/add-new-repository.html.textile.liquid
- user/tutorials/git-arvados-guide.html.textile.liquid
+ - Running workflows at the command line:
+ - user/cwl/cwl-runner.html.textile.liquid
+ - user/cwl/cwl-run-options.html.textile.liquid
- Develop an Arvados workflow:
- user/tutorials/intro-crunch.html.textile.liquid
- user/tutorials/writing-cwl-workflow.html.textile.liquid
- user/cwl/cwl-style.html.textile.liquid
+ - user/cwl/federated-workflows.html.textile.liquid
- user/cwl/cwl-extensions.html.textile.liquid
+ - user/cwl/cwl-versions.html.textile.liquid
- user/topics/arv-docker.html.textile.liquid
- Reference:
- user/topics/link-accounts.html.textile.liquid
- user/copying/agpl-3.0.html
- user/copying/LICENSE-2.0.html
- user/copying/by-sa-3.0.html
- - Obsolete documentation:
- - user/topics/running-pipeline-command-line.html.textile.liquid
- - user/topics/arv-run.html.textile.liquid
- - user/tutorials/running-external-program.html.textile.liquid
- - user/topics/crunch-tools-overview.html.textile.liquid
- - user/tutorials/tutorial-firstscript.html.textile.liquid
- - user/tutorials/tutorial-submit-job.html.textile.liquid
- - user/topics/tutorial-parallel.html.textile.liquid
- - user/topics/run-command.html.textile.liquid
- - user/reference/job-pipeline-ref.html.textile.liquid
- - user/examples/crunch-examples.html.textile.liquid
- - user/topics/tutorial-trait-search.html.textile.liquid
sdk:
- Overview:
- sdk/index.html.textile.liquid
- sdk/python/arvados-fuse.html.textile.liquid
- sdk/python/events.html.textile.liquid
- sdk/python/cookbook.html.textile.liquid
- - sdk/python/crunch-utility-libraries.html.textile.liquid
- CLI:
- sdk/cli/install.html.textile.liquid
- sdk/cli/index.html.textile.liquid
- Ruby:
- sdk/ruby/index.html.textile.liquid
- sdk/ruby/example.html.textile.liquid
- - Java:
+ - Java v2:
+ - sdk/java-v2/index.html.textile.liquid
+ - sdk/java-v2/example.html.textile.liquid
+ - sdk/java-v2/javadoc.html.textile.liquid
+ - Java v1:
- sdk/java/index.html.textile.liquid
- sdk/java/example.html.textile.liquid
api:
- api/methods/container_requests.html.textile.liquid
- api/methods/containers.html.textile.liquid
- api/methods/workflows.html.textile.liquid
- - Jobs engine (deprecated):
+ - Jobs engine (legacy):
- api/crunch-scripts.html.textile.liquid
- api/methods/jobs.html.textile.liquid
- api/methods/job_tasks.html.textile.liquid
- api/methods/pipeline_instances.html.textile.liquid
- api/methods/pipeline_templates.html.textile.liquid
- - Metadata for bioinformatics:
+ - Metadata for bioinformatics (deprecated):
- api/methods/humans.html.textile.liquid
- api/methods/specimens.html.textile.liquid
- api/methods/traits.html.textile.liquid
admin:
- Topics:
- admin/index.html.textile.liquid
+ - Configuration:
+ - admin/config.html.textile.liquid
- Upgrading and migrations:
- admin/upgrading.html.textile.liquid
+ - admin/config-migration.html.textile.liquid
- install/migrate-docker19.html.textile.liquid
- admin/upgrade-crunch2.html.textile.liquid
- Users and Groups:
- Cloud:
- admin/storage-classes.html.textile.liquid
- admin/spot-instances.html.textile.liquid
- - Other:
+ - admin/cloudtest.html.textile.liquid
+ - Data Management:
- admin/collection-versioning.html.textile.liquid
+ - admin/collection-managed-properties.html.textile.liquid
+ - Other:
- admin/federation.html.textile.liquid
+ - admin/controlling-container-reuse.html.textile.liquid
+ - admin/logs-table-management.html.textile.liquid
+ - admin/troubleshooting.html.textile.liquid
installguide:
- Overview:
- install/index.html.textile.liquid
- install/crunch2-slurm/install-test.html.textile.liquid
- install/install-nodemanager.html.textile.liquid
- install/install-compute-ping.html.textile.liquid
- - Jobs API support (deprecated):
- - install/install-crunch-dispatch.html.textile.liquid
- - install/install-compute-node.html.textile.liquid
+ - Containers API support on cloud (beta):
+ - install/install-dispatch-cloud.html.textile.liquid