18290: LSF: make the bsub arguments completely configurable.

[arvados.git] / lib / config / config.default.yml

diff --git a/lib/config/config.default.yml b/lib/config/config.default.yml
index 4e2a0e26d4bb599314e6f3292aeaf6cc1b2fef85..8b51a85d9adf1a49eb7e93bbd7efdf316a87f743 100644 (file)
--- a/lib/config/config.default.yml
+++ b/lib/config/config.default.yml
@@ -1021,14 +1021,23 @@ Clusters:
           AssignNodeHostname: "compute%<slot_number>d"
 
       LSF:
-        # Additional arguments to bsub when submitting Arvados
-        # containers as LSF jobs.
+        # Arguments to bsub when submitting Arvados containers as LSF jobs.
+        #
+        # Template variables starting with % will be substituted as follows:
+        #
+        # %U uuid
+        # %C number of cpus
+        # %M memory in MB
+        # %T tmp in MB
+        #
+        # Use %% to express a literal %. The %%J in the default will be changed
+        # to %J, which is interpreted by bsub itself.
         #
         # Note that the default arguments cause LSF to write two files
         # in /tmp on the compute node each time an Arvados container
         # runs. Ensure you have something in place to delete old files
-        # from /tmp, or adjust these arguments accordingly.
-        BsubArgumentsList: ["-o", "/tmp/crunch-run.%J.out", "-e", "/tmp/crunch-run.%J.err"]
+        # from /tmp, or adjust the "-o" and "-e" arguments accordingly.
+        BsubArgumentsList: ["-o", "/tmp/crunch-run.%%J.out", "-e", "/tmp/crunch-run.%%J.err", "-J", "%U", "-n", "%C", "-D", "%MMB", "-R", "rusage[mem=%MMB:tmp=%TMB] span[hosts=1]"]
 
         # Use sudo to switch to this user account when submitting LSF
         # jobs.