+import functools
+import json
import logging
import mock
-import unittest
import os
-import functools
-import json
import StringIO
+import unittest
+import arvados
import arvados_cwl
+from .mock_discovery import get_rootDesc
class TestMakeOutput(unittest.TestCase):
+ def setUp(self):
+ self.api = mock.MagicMock()
+ self.api._rootDesc = get_rootDesc()
+
@mock.patch("arvados.collection.Collection")
@mock.patch("arvados.collection.CollectionReader")
def test_make_output_collection(self, reader, col):
- api = mock.MagicMock()
keep_client = mock.MagicMock()
- runner = arvados_cwl.ArvCwlRunner(api, keep_client=keep_client)
+ runner = arvados_cwl.ArvCwlRunner(self.api, keep_client=keep_client)
runner.project_uuid = 'zzzzz-j7d0g-zzzzzzzzzzzzzzz'
final = mock.MagicMock()
readermock = mock.MagicMock()
reader.return_value = readermock
+ final_uuid = final.manifest_locator()
+ num_retries = runner.num_retries
+
cwlout = StringIO.StringIO()
openmock = mock.MagicMock()
final.open.return_value = openmock
openmock.__enter__.return_value = cwlout
- runner.make_output_collection("Test output", {
+ _, runner.final_output_collection = runner.make_output_collection("Test output", "tag0,tag1,tag2", {
"foo": {
"class": "File",
"location": "keep:99999999999999999999999999999991+99/foo.txt",
"bar": {
"class": "File",
"location": "keep:99999999999999999999999999999992+99/bar.txt",
- "basename": "baz.txt"
+ "basename": "baz.txt",
+ "size": 4
}
})
self.assertEqual("""{
"bar": {
"class": "File",
- "location": "baz.txt"
+ "location": "baz.txt",
+ "size": 4
},
"foo": {
"class": "File",
- "location": "foo.txt"
+ "location": "foo.txt",
+ "size": 3
}
}""", cwlout.getvalue())
self.assertIs(final, runner.final_output_collection)
+ self.assertIs(final_uuid, runner.final_output_collection.manifest_locator())
+ self.api.links().create.assert_has_calls([mock.call(body={"head_uuid": final_uuid, "link_class": "tag", "name": "tag0"}), mock.call().execute(num_retries=num_retries)])
+ self.api.links().create.assert_has_calls([mock.call(body={"head_uuid": final_uuid, "link_class": "tag", "name": "tag1"}), mock.call().execute(num_retries=num_retries)])
+ self.api.links().create.assert_has_calls([mock.call(body={"head_uuid": final_uuid, "link_class": "tag", "name": "tag2"}), mock.call().execute(num_retries=num_retries)])