4250: update user guide to reflect current code.

[arvados.git] / doc / user / tutorials / tutorial-pipeline-workbench.html.textile.liquid

diff --git a/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid b/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
index 9373c9bb24b82b57f4907855a36af4b52961e192..8dad6ab25e11de078f014113ef808ff57fe4109c 100644 (file)
--- a/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
+++ b/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
@@ -17,12 +17,12 @@ notextile. <div class="spaced-out">
 # Start from the *Workbench Dashboard*.  You can access the Dashboard by clicking on *<i class="fa fa-lg fa-fw fa-dashboard"></i> Dashboard* in the upper left corner of any Workbench page.
 # Click on the <span class="btn btn-sm btn-primary"><i class="fa fa-fw fa-gear"></i> Run a pipeline...</span> button.  This will open a dialog box titled *Choose a pipeline to run*.
 # Click to open the *All projects <span class="caret"></span>* menu.  Under the *Projects shared with me* header, select *<i class="fa fa-fw fa-share-alt"></i> Arvados Tutorial*.
-# Select *<i class="fa fa-fw fa-gear"></i> Tutorial align using bwa mem* and click the <span class="btn btn-sm btn-primary" >Next: choose inputs <i class="fa fa-fw fa-arrow-circle-right"></i></span> button.  This will load a new page where you will supply the inputs for the pipeline.
+# Select *<i class="fa fa-fw fa-gear"></i> Tutorial align using bwa mem* and click the <span class="btn btn-sm btn-primary" >Next: choose inputs <i class="fa fa-fw fa-arrow-circle-right"></i></span> button.  This will create a new pipeline in your *Home* project and will open it. You can now supply the inputs for the pipeline.
 # The first input parameter to the pipeline is *Reference genoma (fasta)*.  Click the <span class="btn btn-sm btn-primary">Choose</span> button beneath that header.  This will open a dialog box titled *Choose a dataset for Reference genome (fasta)*.
 # Once again, open the *All projects <span class="caret"></span>* menu and select *<i class="fa fa-fw fa-share-alt"></i> Arvados Tutorial*.  Select *<i class="fa fa-fw fa-archive"></i> Tutorial chromosome 19 reference* and click the <span class="btn btn-sm btn-primary" >OK</span> button.
 # Repeat the previous two steps to set the *Input genome (fastq)* parameter to *<i class="fa fa-fw fa-archive"></i> Tutorial sample exome*.
 # Click on the <span class="btn btn-sm btn-primary" >Run <i class="fa fa-fw fa-play"></i></span> button.  The page updates to show you that the pipeline has been submitted to run on the Arvados cluster.
-# After the pipeline starts running, you can track the progress by watching log messages from jobs.  This page refreshes automatically.  You will see a <span class="label label-success">success</span> label under the *job* the column when the pipeline completes successfully.
+# After the pipeline starts running, you can track the progress by watching log messages from jobs.  This page refreshes automatically.  You will see a <span class="label label-success">complete</span> label under the *job* column when the pipeline completes successfully.
 # Click on the *Output* link to see the results of the job.  This will load a new page listing the output files from this pipeline.  You'll see the output SAM file from the alignment tool under the *Files* tab.
 # Click on the <span class="btn btn-sm btn-info"><i class="fa fa-download"></i></span> download button to the right of the SAM file to download your results.