import arvados.commands.put as arv_put
import ciso8601
+from arvados._version import __version__
+
EARLIEST_DATETIME = datetime.datetime(datetime.MINYEAR, 1, 1, 0, 0, 0)
STAT_CACHE_ERRORS = (IOError, OSError, ValueError)
'DockerImage', ['repo', 'tag', 'hash', 'created', 'vsize'])
keepdocker_parser = argparse.ArgumentParser(add_help=False)
+keepdocker_parser.add_argument(
+ '--version', action='version', version="%s %s" % (sys.argv[0], __version__),
+ help='Print version and exit.')
keepdocker_parser.add_argument(
'-f', '--force', action='store_true', default=False,
help="Re-upload the image even if it already exists on the server")
return [(image['collection'], image) for image in images
if image['collection'] in existing_coll_uuids]
+def items_owned_by(owner_uuid, arv_items):
+ return (item for item in arv_items if item['owner_uuid'] == owner_uuid)
+
def main(arguments=None, stdout=sys.stdout):
args = arg_parser.parse_args(arguments)
api = arvados.api('v1')
num_retries=args.retries)['uuid']
# Find image hash tags
- existing_links = api.links().list(
+ existing_links = _get_docker_links(
+ api, args.retries,
filters=[['link_class', '=', 'docker_image_hash'],
- ['name', '=', image_hash]]
- ).execute(num_retries=args.retries)['items']
+ ['name', '=', image_hash]])
if existing_links:
# get readable collections
collections = api.collections().list(
if collections:
# check for repo+tag links on these collections
- existing_repo_tag = (api.links().list(
- filters=[['link_class', '=', 'docker_image_repo+tag'],
- ['name', '=', image_repo_tag],
- ['head_uuid', 'in', collections]]
- ).execute(num_retries=args.retries)['items']) if image_repo_tag else []
-
- # Filter on elements owned by the parent project
- owned_col = [c for c in collections if c['owner_uuid'] == parent_project_uuid]
- owned_img = [c for c in existing_links if c['owner_uuid'] == parent_project_uuid]
- owned_rep = [c for c in existing_repo_tag if c['owner_uuid'] == parent_project_uuid]
-
- if owned_col:
- # already have a collection owned by this project
- coll_uuid = owned_col[0]['uuid']
+ if image_repo_tag:
+ existing_repo_tag = _get_docker_links(
+ api, args.retries,
+ filters=[['link_class', '=', 'docker_image_repo+tag'],
+ ['name', '=', image_repo_tag],
+ ['head_uuid', 'in', collections]])
else:
+ existing_repo_tag = []
+
+ try:
+ coll_uuid = next(items_owned_by(parent_project_uuid, collections))['uuid']
+ except StopIteration:
# create new collection owned by the project
coll_uuid = api.collections().create(
body={"manifest_text": collections[0]['manifest_text'],
).execute(num_retries=args.retries)['uuid']
link_base = {'owner_uuid': parent_project_uuid,
- 'head_uuid': coll_uuid }
+ 'head_uuid': coll_uuid,
+ 'properties': existing_links[0]['properties']}
- if not owned_img:
+ if not any(items_owned_by(parent_project_uuid, existing_links)):
# create image link owned by the project
make_link(api, args.retries,
'docker_image_hash', image_hash, **link_base)
- if not owned_rep and image_repo_tag:
+ if image_repo_tag and not any(items_owned_by(parent_project_uuid, existing_repo_tag)):
# create repo+tag link owned by the project
make_link(api, args.retries, 'docker_image_repo+tag',
image_repo_tag, **link_base)
# Read the image metadata and make Arvados links from it.
image_file.seek(0)
image_tar = tarfile.open(fileobj=image_file)
- json_file = image_tar.extractfile(image_tar.getmember(image_hash + '/json'))
+ image_hash_type, _, raw_image_hash = image_hash.rpartition(':')
+ if image_hash_type:
+ json_filename = raw_image_hash + '.json'
+ else:
+ json_filename = raw_image_hash + '/json'
+ json_file = image_tar.extractfile(image_tar.getmember(json_filename))
image_metadata = json.load(json_file)
json_file.close()
image_tar.close()