--- /dev/null
+#!/usr/bin/env python
+#
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: AGPL-3.0
+#
+
+from __future__ import print_function, absolute_import
+import argparse
+import arvados
+import arvados.util
+import csv
+import sys
+
+"""
+ Given a list of collections missing blocks (as produced by
+keep-balance), produce a report listing affected collections and
+container requests.
+"""
+
+def rerun_request(arv, container_requests_to_rerun, ct):
+ requests = arvados.util.list_all(arv.container_requests().list, filters=[["container_uuid", "=", ct["uuid"]]])
+ for cr in requests:
+ if cr["requesting_container_uuid"]:
+ rerun_request(arv, container_requests_to_rerun, arv.containers().get(uuid=cr["requesting_container_uuid"]).execute())
+ else:
+ container_requests_to_rerun[cr["uuid"]] = cr
+
+def get_owner(arv, owners, uuid):
+ if uuid not in owners:
+ if uuid[6:11] == "tpzed":
+ owners[uuid] = arv.users().get(uuid=uuid).execute()["full_name"]
+ else:
+ owners[uuid] = arv.groups().get(uuid=uuid).execute()["name"]
+ return owners[uuid]
+
+def main():
+ parser = argparse.ArgumentParser(description='Re-run containers associated with missing blocks')
+ parser.add_argument('inp')
+ args = parser.parse_args()
+
+ arv = arvados.api('v1')
+
+ busted_collections = set()
+
+ # Get the list of bad collection PDHs
+ blocksfile = open(args.inp, "rt")
+ for line in blocksfile:
+ # Ignore the first item, that's the block id
+ collections = line.rstrip().split(" ")[1:]
+ for c in collections:
+ busted_collections.add(c)
+
+ out = csv.writer(sys.stdout)
+
+ out.writerow(("collection uuid", "container request uuid", "record name", "modified at", "owner uuid", "owner name", "notes"))
+
+ owners = {}
+ collections_to_delete = {}
+ container_requests_to_rerun = {}
+ # Get containers that produced these collections
+ i = 0
+ for b in busted_collections:
+ i += 1
+ collections_to_delete = arvados.util.list_all(arv.collections().list, filters=[["portable_data_hash", "=", b]])
+ for d in collections_to_delete:
+ t = ""
+ if d["properties"].get("type") not in ("output", "log"):
+ t = "\"type\" was '%s', expected one of 'output' or 'log'" % d["properties"].get("type")
+ out.writerow((d["uuid"], "", d["name"], d["modified_at"], d["owner_uuid"], get_owner(arv, owners, d["owner_uuid"]), t))
+
+ maybe_containers_to_rerun = arvados.util.list_all(arv.containers().list, filters=[["output", "=", b]])
+ for ct in maybe_containers_to_rerun:
+ rerun_request(arv, container_requests_to_rerun, ct)
+
+ i = 0
+ for _, cr in container_requests_to_rerun.items():
+ i += 1
+ out.writerow(("", cr["uuid"], cr["name"], cr["modified_at"], cr["owner_uuid"], get_owner(arv, owners, cr["owner_uuid"]), ""))
+
+
+if __name__ == "__main__":
+ main()