Merge branch '10291-discovery-blacklist' refs #10291

[arvados.git] / sdk / cwl / tests / test_submit.py

diff --git a/sdk/cwl/tests/test_submit.py b/sdk/cwl/tests/test_submit.py
index 6674efb8c4f75c2391160a702588ea2354e377a3..0ff9da927afafb9908bc32ab747e2fb169c5a9dc 100644 (file)
--- a/sdk/cwl/tests/test_submit.py
+++ b/sdk/cwl/tests/test_submit.py
@@ -1,16 +1,17 @@
-import arvados
-import arvados.keep
-import arvados.collection
-import arvados_cwl
 import copy
 import cStringIO
 import functools
 import hashlib
+import json
+import logging
 import mock
 import sys
 import unittest
-import json
-import logging
+
+import arvados
+import arvados.collection
+import arvados_cwl
+import arvados.keep
 
 from .matcher import JsonDiffMatcher
 
@@ -38,6 +39,7 @@ def stubs(func):
 
 
         stubs.api = mock.MagicMock()
+        stubs.api._rootDesc = arvados.api('v1')._rootDesc
         stubs.api.users().current().execute.return_value = {
             "uuid": stubs.fake_user_uuid,
         }
@@ -60,7 +62,13 @@ def stubs(func):
             "uuid": "zzzzz-4zz18-zzzzzzzzzzzzzz5",
             "portable_data_hash": "99999999999999999999999999999995+99",
             "manifest_text": ""
-        }        )
+        },
+        {
+            "uuid": "zzzzz-4zz18-zzzzzzzzzzzzzz6",
+            "portable_data_hash": "99999999999999999999999999999996+99",
+            "manifest_text": ""
+        }
+        )
         stubs.api.collections().get().execute.return_value = {
             "portable_data_hash": "99999999999999999999999999999993+99", "manifest_text": "./tool 00000000000000000000000000000000+0 0:0:submit_tool.cwl 0:0:blub.txt"}
 
@@ -112,6 +120,38 @@ def stubs(func):
             'script_version': 'master',
             'script': 'cwl-runner'
         }
+        stubs.pipeline_component = stubs.expect_job_spec.copy()
+        stubs.expect_pipeline_instance = {
+            'name': 'submit_wf.cwl',
+            'state': 'RunningOnServer',
+            "components": {
+                "cwl-runner": {
+                    'runtime_constraints': {'docker_image': 'arvados/jobs'},
+                    'script_parameters': {
+                        'y': {"value": {'basename': '99999999999999999999999999999998+99', 'location': 'keep:99999999999999999999999999999998+99', 'class': 'Directory'}},
+                        'x': {"value": {'basename': 'blorp.txt', 'class': 'File', 'location': 'keep:99999999999999999999999999999994+99/blorp.txt'}},
+                        'z': {"value": {'basename': 'anonymous', 'class': 'Directory',
+                              'listing': [
+                                  {'basename': 'renamed.txt', 'class': 'File', 'location': 'keep:99999999999999999999999999999998+99/file1.txt'}
+                              ]}},
+                        'cwl:tool': '99999999999999999999999999999991+99/wf/submit_wf.cwl'
+                    },
+                    'repository': 'arvados',
+                    'script_version': 'master',
+                    'script': 'cwl-runner'
+                }
+            }
+        }
+        stubs.pipeline_create = copy.deepcopy(stubs.expect_pipeline_instance)
+        stubs.expect_pipeline_uuid = "zzzzz-d1hrv-zzzzzzzzzzzzzzz"
+        stubs.pipeline_create["uuid"] = stubs.expect_pipeline_uuid
+        stubs.pipeline_with_job = copy.deepcopy(stubs.pipeline_create)
+        stubs.pipeline_with_job["components"]["cwl-runner"]["job"] = {
+            "uuid": "zzzzz-8i9sb-zzzzzzzzzzzzzzz",
+            "state": "Queued"
+        }
+        stubs.api.pipeline_instances().create().execute.return_value = stubs.pipeline_create
+        stubs.api.pipeline_instances().get().execute.return_value = stubs.pipeline_with_job
 
         stubs.expect_container_spec = {
             'priority': 1,
@@ -157,11 +197,12 @@ def stubs(func):
 
 
 class TestSubmit(unittest.TestCase):
+    @mock.patch("time.sleep")
     @stubs
-    def test_submit(self, stubs):
+    def test_submit(self, stubs, tm):
         capture_stdout = cStringIO.StringIO()
         exited = arvados_cwl.main(
-            ["--submit", "--no-wait",
+            ["--submit", "--no-wait", "--debug",
              "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"],
             capture_stdout, sys.stderr, api_client=stubs.api)
         self.assertEqual(exited, 0)
@@ -192,16 +233,16 @@ class TestSubmit(unittest.TestCase):
             }, ensure_unique_name=True),
             mock.call().execute()])
 
-        expect_job = copy.deepcopy(stubs.expect_job_spec)
-        expect_job["owner_uuid"] = stubs.fake_user_uuid
-        stubs.api.jobs().create.assert_called_with(
-            body=expect_job,
-            find_or_create=True)
+        expect_pipeline = copy.deepcopy(stubs.expect_pipeline_instance)
+        expect_pipeline["owner_uuid"] = stubs.fake_user_uuid
+        stubs.api.pipeline_instances().create.assert_called_with(
+            body=expect_pipeline)
         self.assertEqual(capture_stdout.getvalue(),
-                         stubs.expect_job_uuid + '\n')
+                         stubs.expect_pipeline_uuid + '\n')
 
+    @mock.patch("time.sleep")
     @stubs
-    def test_submit_with_project_uuid(self, stubs):
+    def test_submit_with_project_uuid(self, stubs, tm):
         project_uuid = 'zzzzz-j7d0g-zzzzzzzzzzzzzzz'
 
         exited = arvados_cwl.main(
@@ -211,11 +252,10 @@ class TestSubmit(unittest.TestCase):
             sys.stdout, sys.stderr, api_client=stubs.api)
         self.assertEqual(exited, 0)
 
-        expect_body = copy.deepcopy(stubs.expect_job_spec)
-        expect_body["owner_uuid"] = project_uuid
-        stubs.api.jobs().create.assert_called_with(
-            body=expect_body,
-            find_or_create=True)
+        expect_pipeline = copy.deepcopy(stubs.expect_pipeline_instance)
+        expect_pipeline["owner_uuid"] = project_uuid
+        stubs.api.pipeline_instances().create.assert_called_with(
+            body=expect_pipeline)
 
     @stubs
     def test_submit_container(self, stubs):