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[arvados.git] / doc / user / tutorials / tutorial-pipeline-workbench.html.textile.liquid

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@@ -4,6 +4,10 @@ navsection: userguide
 title: "Running a pipeline using Workbench"
 ...
 
+{% include 'crunch1only_begin' %}
+On those sites, the details will be slightly different and the example pipeline might not be available.
+{% include 'crunch1only_end' %}
+
 A "pipeline" (sometimes called a "workflow" in other systems) is a sequence of steps that apply various programs or tools to transform input data to output data.  Pipelines are the principal means of performing computation with Arvados.  This tutorial demonstrates how to run a single-stage pipeline to take a small data set of paired-end reads from a sample "exome":https://en.wikipedia.org/wiki/Exome in "FASTQ":https://en.wikipedia.org/wiki/FASTQ_format format and align them to "Chromosome 19":https://en.wikipedia.org/wiki/Chromosome_19_%28human%29 using the "bwa mem":http://bio-bwa.sourceforge.net/ tool, producing a "Sequence Alignment/Map (SAM)":https://samtools.github.io/ file.  This tutorial will introduce the following Arvados features:
 
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