import re
import sys
import threading
+import _strptime
from arvados.api import OrderedJsonModel
from crunchstat_summary import logger
logger.debug("%s: logdata %s", self.label, logdata)
+ def run_child(self, uuid):
+ if self._skip_child_jobs:
+ logger.warning('%s: omitting stats from child job %s'
+ ' because --skip-child-jobs flag is on',
+ self.label, uuid)
+ return
+ logger.debug('%s: follow %s', self.label, uuid)
+ child_summarizer = JobSummarizer(uuid)
+ child_summarizer.stats_max = self.stats_max
+ child_summarizer.task_stats = self.task_stats
+ child_summarizer.tasks = self.tasks
+ child_summarizer.starttime = self.starttime
+ child_summarizer.run()
+ logger.debug('%s: done %s', self.label, uuid)
+
def run(self):
logger.debug("%s: parsing logdata %s", self.label, self._logdata)
for line in self._logdata:
self.stats_max['time']['elapsed'] = elapsed
continue
+ # Old style job logs only - newer style uses job['components']
+ uuid = None
m = re.search(r'^\S+ \S+ \d+ (?P<seq>\d+) stderr Queued job (?P<uuid>\S+)$', line)
if m:
- uuid = m.group('uuid')
- if self._skip_child_jobs:
- logger.warning('%s: omitting stats from child job %s'
- ' because --skip-child-jobs flag is on',
- self.label, uuid)
- continue
- logger.debug('%s: follow %s', self.label, uuid)
- child_summarizer = JobSummarizer(uuid)
- child_summarizer.stats_max = self.stats_max
- child_summarizer.task_stats = self.task_stats
- child_summarizer.tasks = self.tasks
- child_summarizer.starttime = self.starttime
- child_summarizer.run()
- logger.debug('%s: done %s', self.label, uuid)
+ self.run_child(m.group('uuid'))
continue
m = re.search(r'^(?P<timestamp>[^\s.]+)(\.\d+)? (?P<job_uuid>\S+) \d+ (?P<seq>\d+) stderr crunchstat: (?P<category>\S+) (?P<current>.*?)( -- interval (?P<interval>.*))?\n', line)
if not m:
continue
- if self.label is None:
- self.label = m.group('job_uuid')
- logger.debug('%s: using job uuid as label', self.label)
- if m.group('category').endswith(':'):
- # "stderr crunchstat: notice: ..."
- continue
- elif m.group('category') in ('error', 'caught'):
- continue
- elif m.group('category') == 'read':
- # "stderr crunchstat: read /proc/1234/net/dev: ..."
- # (crunchstat formatting fixed, but old logs still say this)
- continue
- task_id = self.seq_to_uuid[int(m.group('seq'))]
- task = self.tasks[task_id]
-
- # Use the first and last crunchstat timestamps as
- # approximations of starttime and finishtime.
- timestamp = datetime.datetime.strptime(
- m.group('timestamp'), '%Y-%m-%d_%H:%M:%S')
- if not task.starttime:
- task.starttime = timestamp
- logger.debug('%s: task %s starttime %s',
- self.label, task_id, timestamp)
- task.finishtime = timestamp
-
- if not self.starttime:
- self.starttime = timestamp
- self.finishtime = timestamp
-
- this_interval_s = None
- for group in ['current', 'interval']:
- if not m.group(group):
+ try:
+ if self.label is None:
+ self.label = m.group('job_uuid')
+ logger.debug('%s: using job uuid as label', self.label)
+ if m.group('category').endswith(':'):
+ # "stderr crunchstat: notice: ..."
continue
- category = m.group('category')
- words = m.group(group).split(' ')
- stats = {}
- for val, stat in zip(words[::2], words[1::2]):
- try:
- if '.' in val:
- stats[stat] = float(val)
- else:
- stats[stat] = int(val)
- except ValueError as e:
- raise ValueError(
- 'Error parsing {} stat in "{}": {!r}'.format(
- stat, line, e))
- if 'user' in stats or 'sys' in stats:
- stats['user+sys'] = stats.get('user', 0) + stats.get('sys', 0)
- if 'tx' in stats or 'rx' in stats:
- stats['tx+rx'] = stats.get('tx', 0) + stats.get('rx', 0)
- for stat, val in stats.iteritems():
- if group == 'interval':
- if stat == 'seconds':
- this_interval_s = val
- continue
- elif not (this_interval_s > 0):
- logger.error(
- "BUG? interval stat given with duration {!r}".
- format(this_interval_s))
- continue
+ elif m.group('category') in ('error', 'caught'):
+ continue
+ elif m.group('category') == 'read':
+ # "stderr crunchstat: read /proc/1234/net/dev: ..."
+ # (crunchstat formatting fixed, but old logs still say this)
+ continue
+ task_id = self.seq_to_uuid[int(m.group('seq'))]
+ task = self.tasks[task_id]
+
+ # Use the first and last crunchstat timestamps as
+ # approximations of starttime and finishtime.
+ timestamp = datetime.datetime.strptime(
+ m.group('timestamp'), '%Y-%m-%d_%H:%M:%S')
+ if not task.starttime:
+ task.starttime = timestamp
+ logger.debug('%s: task %s starttime %s',
+ self.label, task_id, timestamp)
+ task.finishtime = timestamp
+
+ if not self.starttime:
+ self.starttime = timestamp
+ self.finishtime = timestamp
+
+ this_interval_s = None
+ for group in ['current', 'interval']:
+ if not m.group(group):
+ continue
+ category = m.group('category')
+ words = m.group(group).split(' ')
+ stats = {}
+ for val, stat in zip(words[::2], words[1::2]):
+ try:
+ if '.' in val:
+ stats[stat] = float(val)
+ else:
+ stats[stat] = int(val)
+ except ValueError as e:
+ raise ValueError(
+ 'Error parsing {} stat: {!r}'.format(
+ stat, e))
+ if 'user' in stats or 'sys' in stats:
+ stats['user+sys'] = stats.get('user', 0) + stats.get('sys', 0)
+ if 'tx' in stats or 'rx' in stats:
+ stats['tx+rx'] = stats.get('tx', 0) + stats.get('rx', 0)
+ for stat, val in stats.iteritems():
+ if group == 'interval':
+ if stat == 'seconds':
+ this_interval_s = val
+ continue
+ elif not (this_interval_s > 0):
+ logger.error(
+ "BUG? interval stat given with duration {!r}".
+ format(this_interval_s))
+ continue
+ else:
+ stat = stat + '__rate'
+ val = val / this_interval_s
+ if stat in ['user+sys__rate', 'tx+rx__rate']:
+ task.series[category, stat].append(
+ (timestamp - self.starttime, val))
else:
- stat = stat + '__rate'
- val = val / this_interval_s
- if stat in ['user+sys__rate', 'tx+rx__rate']:
+ if stat in ['rss']:
task.series[category, stat].append(
(timestamp - self.starttime, val))
- else:
- if stat in ['rss']:
- task.series[category, stat].append(
- (timestamp - self.starttime, val))
- self.task_stats[task_id][category][stat] = val
- if val > self.stats_max[category][stat]:
- self.stats_max[category][stat] = val
- logger.debug('%s: done parsing', self.label)
+ self.task_stats[task_id][category][stat] = val
+ if val > self.stats_max[category][stat]:
+ self.stats_max[category][stat] = val
+ except Exception as e:
+ logger.info('Skipping malformed line: {}Error was: {}\n'.format(line, e))
+ logger.debug('%s: done parsing log', self.label)
+
+ # Enabling this will roll up stats for all subjobs into the parent job
+ if False and 'components' in self.job:
+ for cname, component in self.job['components'].iteritems():
+ self.run_child(component)
self.job_tot = collections.defaultdict(
functools.partial(collections.defaultdict, int))
class PipelineSummarizer(object):
def __init__(self, pipeline_instance_uuid, **kwargs):
- arv = arvados.api('v1', model=OrderedJsonModel())
- instance = arv.pipeline_instances().get(
+ self.arv = arvados.api('v1', model=OrderedJsonModel())
+ instance = self.arv.pipeline_instances().get(
uuid=pipeline_instance_uuid).execute()
self.summarizers = collections.OrderedDict()
for cname, component in instance['components'].iteritems():
logger.warning(
"%s: skipping component with no job assigned", cname)
else:
- logger.info(
- "%s: job %s", cname, component['job']['uuid'])
- summarizer = JobSummarizer(component['job'], **kwargs)
- summarizer.label = '{} {}'.format(
- cname, component['job']['uuid'])
- self.summarizers[cname] = summarizer
+ self.summarize_job(cname, component['job'], **kwargs)
self.label = pipeline_instance_uuid
+ def summarize_job(self, cname, job, **kwargs):
+ uuid = job['uuid']
+ logger.info("%s: job %s", cname, uuid)
+ summarizer = JobSummarizer(job, **kwargs)
+ summarizer.label = '{} {}'.format(cname, uuid)
+ self.summarizers[cname] = summarizer
+ if 'components' in job:
+ for cname, uuid in job['components'].iteritems():
+ subjob = self.arv.jobs().get(uuid=uuid).execute()
+ self.summarize_job(cname, subjob, **kwargs)
+
def run(self):
threads = []
for summarizer in self.summarizers.itervalues():
projects / arvados.git / blobdiff